ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62c07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479797.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2387 Score = 190 bits (96), Expect = 2e-45 Identities = 237/284 (83%) Strand = Plus / Plus Query: 11 agctcaagacgctcactgttcttgccgtccagtccaaccaactcaccggggcgataccgg 70 ||||||||| ||||||||| |||||| ||||||||||||| |||||||| ||||| |||| Sbjct: 576 agctcaagaagctcactgtgcttgccctccagtccaaccagctcaccggcgcgatcccgg 635 Query: 71 cgtctctaggggacttgccggagctgacacggctggacttgagctccaatcacctgtttg 130 | ||||| ||||||||||||||||| |||||||||| |||||||| |||| ||| || | Sbjct: 636 catctctcggggacttgccggagctcgcacggctggatttgagctcaaatcgcctcttcg 695 Query: 131 gctccatcccttccaagcttgccggcatcccacagcttgcaacactggacctccgaaaca 190 | || |||||||||||||| |||| ||||| ||||||| ||| |||||||| | || | Sbjct: 696 gatcgatcccttccaagctcgccgcaatccccaagcttgccacattggacctcaggaata 755 Query: 191 atacactttcaggaagtgttccttctgatctgaagaaattgggtcacggatttaagttcg 250 | || |||||||||||||||||||||| ||||||||| || | || ||| | |||| Sbjct: 756 acaccctttcaggaagtgttccttctggcctgaagaaactgaacgaggggtttcacttcg 815 Query: 251 acaacaatttagagctctgcgggtctcgttttgattctctgaaa 294 | ||||||| ||||||||| || ||| ||||||||||||||| Sbjct: 816 ataacaattcagagctctgtggagctcactttgattctctgaaa 859
>dbj|AK067392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104G24, full insert sequence Length = 2387 Score = 190 bits (96), Expect = 2e-45 Identities = 237/284 (83%) Strand = Plus / Plus Query: 11 agctcaagacgctcactgttcttgccgtccagtccaaccaactcaccggggcgataccgg 70 ||||||||| ||||||||| |||||| ||||||||||||| |||||||| ||||| |||| Sbjct: 576 agctcaagaagctcactgtgcttgccctccagtccaaccagctcaccggcgcgatcccgg 635 Query: 71 cgtctctaggggacttgccggagctgacacggctggacttgagctccaatcacctgtttg 130 | ||||| ||||||||||||||||| |||||||||| |||||||| |||| ||| || | Sbjct: 636 catctctcggggacttgccggagctcgcacggctggatttgagctcaaatcgcctcttcg 695 Query: 131 gctccatcccttccaagcttgccggcatcccacagcttgcaacactggacctccgaaaca 190 | || |||||||||||||| |||| ||||| ||||||| ||| |||||||| | || | Sbjct: 696 gatcgatcccttccaagctcgccgcaatccccaagcttgccacattggacctcaggaata 755 Query: 191 atacactttcaggaagtgttccttctgatctgaagaaattgggtcacggatttaagttcg 250 | || |||||||||||||||||||||| ||||||||| || | || ||| | |||| Sbjct: 756 acaccctttcaggaagtgttccttctggcctgaagaaactgaacgaggggtttcacttcg 815 Query: 251 acaacaatttagagctctgcgggtctcgttttgattctctgaaa 294 | ||||||| ||||||||| || ||| ||||||||||||||| Sbjct: 816 ataacaattcagagctctgtggagctcactttgattctctgaaa 859
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 180 bits (91), Expect = 2e-42 Identities = 178/207 (85%) Strand = Plus / Plus Query: 11 agctcaagacgctcactgttcttgccgtccagtccaaccaactcaccggggcgataccgg 70 ||||||||| ||||||||| |||||| ||||||||||||| |||||||| ||||| |||| Sbjct: 970136 agctcaagaagctcactgtgcttgccctccagtccaaccagctcaccggcgcgatcccgg 970195 Query: 71 cgtctctaggggacttgccggagctgacacggctggacttgagctccaatcacctgtttg 130 | ||||| ||||||||||||||||| |||||||||| |||||||| |||| ||| || | Sbjct: 970196 catctctcggggacttgccggagctcgcacggctggatttgagctcaaatcgcctcttcg 970255 Query: 131 gctccatcccttccaagcttgccggcatcccacagcttgcaacactggacctccgaaaca 190 | || |||||||||||||| |||| ||||| ||||||| ||| |||||||| | || | Sbjct: 970256 gatcgatcccttccaagctcgccgcaatccccaagcttgccacattggacctcaggaata 970315 Query: 191 atacactttcaggaagtgttccttctg 217 | || |||||||||||||||||||||| Sbjct: 970316 acaccctttcaggaagtgttccttctg 970342 Score = 40.1 bits (20), Expect = 5.3 Identities = 41/48 (85%) Strand = Plus / Plus Query: 247 ttcgacaacaatttagagctctgcgggtctcgttttgattctctgaaa 294 ||||| ||||||| ||||||||| || ||| ||||||||||||||| Sbjct: 970500 ttcgataacaattcagagctctgtggagctcactttgattctctgaaa 970547
>dbj|AP004562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470F10 Length = 185294 Score = 180 bits (91), Expect = 2e-42 Identities = 178/207 (85%) Strand = Plus / Plus Query: 11 agctcaagacgctcactgttcttgccgtccagtccaaccaactcaccggggcgataccgg 70 ||||||||| ||||||||| |||||| ||||||||||||| |||||||| ||||| |||| Sbjct: 132874 agctcaagaagctcactgtgcttgccctccagtccaaccagctcaccggcgcgatcccgg 132933 Query: 71 cgtctctaggggacttgccggagctgacacggctggacttgagctccaatcacctgtttg 130 | ||||| ||||||||||||||||| |||||||||| |||||||| |||| ||| || | Sbjct: 132934 catctctcggggacttgccggagctcgcacggctggatttgagctcaaatcgcctcttcg 132993 Query: 131 gctccatcccttccaagcttgccggcatcccacagcttgcaacactggacctccgaaaca 190 | || |||||||||||||| |||| ||||| ||||||| ||| |||||||| | || | Sbjct: 132994 gatcgatcccttccaagctcgccgcaatccccaagcttgccacattggacctcaggaata 133053 Query: 191 atacactttcaggaagtgttccttctg 217 | || |||||||||||||||||||||| Sbjct: 133054 acaccctttcaggaagtgttccttctg 133080 Score = 40.1 bits (20), Expect = 5.3 Identities = 41/48 (85%) Strand = Plus / Plus Query: 247 ttcgacaacaatttagagctctgcgggtctcgttttgattctctgaaa 294 ||||| ||||||| ||||||||| || ||| ||||||||||||||| Sbjct: 133238 ttcgataacaattcagagctctgtggagctcactttgattctctgaaa 133285
>emb|AL049745.9|HSJ654H19 Human DNA sequence from clone RP4-654H19 on chromosome 1p31.1-33 Contains the 5' end of the gene for likely ortholog of mouse Gli-similar 1 Kruppel-like zinc finger (Glia1) (FLJ36155), a novel gene (FLJ10407), a ribosomal protein L37 (RPL37) pseudogene and a CpG island, complete sequence Length = 117493 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 cactttcaggaagtgttcct 213 |||||||||||||||||||| Sbjct: 90271 cactttcaggaagtgttcct 90252
>gb|AC124864.3| Homo sapiens BAC clone RP11-570J4 from 4, complete sequence Length = 166797 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 caaaatacaagccaaaacac 395 |||||||||||||||||||| Sbjct: 108736 caaaatacaagccaaaacac 108717
>gb|AF250324.1|AF250324 Homo sapiens chromosome 4q35 BAC clones RPCI-11-463J17 and RPCI-6-92G13RCB2, complete sequence Length = 245708 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 caaaatacaagccaaaacac 395 |||||||||||||||||||| Sbjct: 54222 caaaatacaagccaaaacac 54241
>gb|AC116622.6| Homo sapiens BAC clone RP11-312L16 from 4, complete sequence Length = 148850 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 caaaatacaagccaaaacac 395 |||||||||||||||||||| Sbjct: 137723 caaaatacaagccaaaacac 137704
>gb|L07060.1|TRRPKI Trichoderma reesei pyruvate kinase (pki1) gene, complete cds Length = 2708 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 tgagctcaagacgctcactg 28 |||||||||||||||||||| Sbjct: 2543 tgagctcaagacgctcactg 2562 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,817,777 Number of Sequences: 3902068 Number of extensions: 2817777 Number of successful extensions: 49731 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49704 Number of HSP's gapped (non-prelim): 27 length of query: 395 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 373 effective length of database: 17,147,199,772 effective search space: 6395905514956 effective search space used: 6395905514956 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
