ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast62c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK122064.1| Oryza sativa (japonica cultivar-group) cDNA clon... 412 e-112
2dbj|AK102900.1| Oryza sativa (japonica cultivar-group) cDNA clon... 412 e-112
3dbj|AK073252.1| Oryza sativa (japonica cultivar-group) cDNA clon... 412 e-112
4dbj|AK105427.1| Oryza sativa (japonica cultivar-group) cDNA clon... 357 2e-95
5gb|AC137922.3| Oryza sativa (japonica cultivar-group) chromosome... 254 2e-64
6gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome... 254 2e-64
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 254 2e-64
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 254 2e-64
9dbj|AK093294.1| Homo sapiens cDNA FLJ35975 fis, clone TESTI2013401 50 0.006
10gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, comple... 48 0.025
11ref|NM_018114.4| Homo sapiens DALR anticodon binding domain cont... 46 0.098
12dbj|AK093204.1| Homo sapiens cDNA FLJ35885 fis, clone TESTI2009018 46 0.098
13gb|AC137630.9| Homo sapiens 3 BAC RP13-131K19 (Roswell Park Canc... 46 0.098
14gb|L39210.1|HUMIMPD Homo sapiens inosine monophosphate dehydroge... 46 0.098
15gb|AE004581.1| Pseudomonas aeruginosa PAO1, section 142 of 529 o... 44 0.39
16emb|X12644.1|PAFFS Pseudomonas aeruginosa ffs gene for 4.5S RNA 44 0.39
17emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genom... 42 1.5
18gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.1
19gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome 40 6.1
20gb|BC002864.2| Homo sapiens Down syndrome critical region gene 1... 40 6.1
21gb|AY325903.1| Homo sapiens calcipressin 1 large isoform (DSCR1)... 40 6.1
22gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 6.1
23dbj|AK092184.1| Homo sapiens cDNA FLJ34865 fis, clone NT2NE20141... 40 6.1
24dbj|AP000055.1| Homo sapiens genomic DNA, chromosome 21q22.1, se... 40 6.1
25dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.1
26ref|NM_004414.5| Homo sapiens Down syndrome critical region gene... 40 6.1
27gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosyn... 40 6.1
28emb|AJ332157.1|HSA332157 Homo sapiens genomic sequence surroundi... 40 6.1
29emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 6.1
30dbj|AP000327.3| Homo sapiens genomic DNA, chromosome 21 clone:RP... 40 6.1
31dbj|AP001720.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 6.1
32gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 6.1
33dbj|AP000170.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 6.1

>dbj|AK122064.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115L08, full
           insert sequence
          Length = 1487

 Score =  412 bits (208), Expect = e-112
 Identities = 310/344 (90%)
 Strand = Plus / Plus

                                                                       
Query: 84  atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 143
           ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| |||
Sbjct: 30  atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 89

                                                                       
Query: 144 gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 203
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 90  gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 149

                                                                       
Query: 204 cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 263
           |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| |||
Sbjct: 150 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 209

                                                                       
Query: 264 tccgcgcacgggtccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaag 323
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tccgcccacggctccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaag 269

                                                                       
Query: 324 ctcgaggtgatgtcgccccccgccgagaccccggaccaaggatcagtcgctgtggagttc 383
           |||||||||||||||||| |||  ||| |||| ||| |||||||  | ||||||||||||
Sbjct: 270 ctcgaggtgatgtcgccctccggtgaggcccccgacgaaggatctattgctgtggagttc 329

                                                       
Query: 384 cacatgccgcctatctgctccccgcttgtaagaccaggacggcc 427
           ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 330 cacatgccgcctatctgttccccgcttgtcagaccaggacggcc 373



to top

>dbj|AK102900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113A20, full
           insert sequence
          Length = 1130

 Score =  412 bits (208), Expect = e-112
 Identities = 310/344 (90%)
 Strand = Plus / Plus

                                                                       
Query: 84  atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 143
           ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| |||
Sbjct: 67  atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 126

                                                                       
Query: 144 gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 203
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 127 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 186

                                                                       
Query: 204 cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 263
           |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| |||
Sbjct: 187 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 246

                                                                       
Query: 264 tccgcgcacgggtccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaag 323
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tccgcccacggctccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaag 306

                                                                       
Query: 324 ctcgaggtgatgtcgccccccgccgagaccccggaccaaggatcagtcgctgtggagttc 383
           |||||||||||||||||| |||  ||| |||| ||| |||||||  | ||||||||||||
Sbjct: 307 ctcgaggtgatgtcgccctccggtgaggcccccgacgaaggatctattgctgtggagttc 366

                                                       
Query: 384 cacatgccgcctatctgctccccgcttgtaagaccaggacggcc 427
           ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 367 cacatgccgcctatctgttccccgcttgtcagaccaggacggcc 410



to top

>dbj|AK073252.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023A06, full
           insert sequence
          Length = 1254

 Score =  412 bits (208), Expect = e-112
 Identities = 310/344 (90%)
 Strand = Plus / Plus

                                                                       
Query: 84  atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 143
           ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| |||
Sbjct: 34  atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 93

                                                                       
Query: 144 gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 203
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 94  gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 153

                                                                       
Query: 204 cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 263
           |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| |||
Sbjct: 154 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 213

                                                                       
Query: 264 tccgcgcacgggtccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaag 323
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tccgcccacggctccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaag 273

                                                                       
Query: 324 ctcgaggtgatgtcgccccccgccgagaccccggaccaaggatcagtcgctgtggagttc 383
           |||||||||||||||||| |||  ||| |||| ||| |||||||  | ||||||||||||
Sbjct: 274 ctcgaggtgatgtcgccctccggtgaggcccccgacgaaggatctattgctgtggagttc 333

                                                       
Query: 384 cacatgccgcctatctgctccccgcttgtaagaccaggacggcc 427
           ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 334 cacatgccgcctatctgttccccgcttgtcagaccaggacggcc 377



to top

>dbj|AK105427.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D01, full
           insert sequence
          Length = 1271

 Score =  357 bits (180), Expect = 2e-95
 Identities = 252/276 (91%)
 Strand = Plus / Plus

                                                                       
Query: 152 ccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccggcccgacgc 211
           |||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 89  ccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgccccgacgc 148

                                                                       
Query: 212 ccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcctccgcgca 271
            || |||| |||||| |||||||| ||||||||||| |||| |||||| |||||||| ||
Sbjct: 149 gcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcctccgccca 208

                                                                       
Query: 272 cgggtccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaagctcgaggt 331
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 cggctccgccctcgtccgcctcggcgacaccgccatgctcgcgtcgatcaagctcgaggt 268

                                                                       
Query: 332 gatgtcgccccccgccgagaccccggaccaaggatcagtcgctgtggagttccacatgcc 391
           |||||||||| |||  ||| |||| ||| |||||||  | ||||||||||||||||||||
Sbjct: 269 gatgtcgccctccggtgaggcccccgacgaaggatctattgctgtggagttccacatgcc 328

                                               
Query: 392 gcctatctgctccccgcttgtaagaccaggacggcc 427
           ||||||||| ||||||||||| ||||||||||||||
Sbjct: 329 gcctatctgttccccgcttgtcagaccaggacggcc 364



to top

>gb|AC137922.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0046A04, complete sequence
          Length = 141001

 Score =  254 bits (128), Expect = 2e-64
 Identities = 197/220 (89%)
 Strand = Plus / Plus

                                                                         
Query: 84    atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 143
             ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| |||
Sbjct: 82060 atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 82119

                                                                         
Query: 144   gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 203
             |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 82120 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 82179

                                                                         
Query: 204   cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 263
             |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| |||
Sbjct: 82180 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 82239

                                                     
Query: 264   tccgcgcacgggtccgccctcgtccgcctcggcgacaccg 303
             ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 82240 tccgcccacggctccgccctcgtccgcctcggcgacaccg 82279



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 54/56 (96%)
 Strand = Plus / Plus

                                                                     
Query: 372   gctgtggagttccacatgccgcctatctgctccccgcttgtaagaccaggacggcc 427
             ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 82565 gctgtggagttccacatgccgcctatctgttccccgcttgtcagaccaggacggcc 82620



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                         
Query: 303   gccatgctcgcgtcgatcaagctcgaggtgatgtcgccccccgccgagaccccggaccaa 362
             ||||||||||||||||||||||||||||||||||||||| |||  ||| |||| ||| ||
Sbjct: 82394 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccctccggtgaggcccccgacgaa 82453

                  
Query: 363   ggatc 367
             |||||
Sbjct: 82454 ggatc 82458



to top

>gb|AC135558.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0007C02, complete sequence
          Length = 148265

 Score =  254 bits (128), Expect = 2e-64
 Identities = 197/220 (89%)
 Strand = Plus / Minus

                                                                         
Query: 84    atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 143
             ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| |||
Sbjct: 14129 atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 14070

                                                                         
Query: 144   gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 203
             |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 14069 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 14010

                                                                         
Query: 204   cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 263
             |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| |||
Sbjct: 14009 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 13950

                                                     
Query: 264   tccgcgcacgggtccgccctcgtccgcctcggcgacaccg 303
             ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 13949 tccgcccacggctccgccctcgtccgcctcggcgacaccg 13910



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 54/56 (96%)
 Strand = Plus / Minus

                                                                     
Query: 372   gctgtggagttccacatgccgcctatctgctccccgcttgtaagaccaggacggcc 427
             ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 13624 gctgtggagttccacatgccgcctatctgttccccgcttgtcagaccaggacggcc 13569



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                         
Query: 303   gccatgctcgcgtcgatcaagctcgaggtgatgtcgccccccgccgagaccccggaccaa 362
             ||||||||||||||||||||||||||||||||||||||| |||  ||| |||| ||| ||
Sbjct: 13795 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccctccggtgaggcccccgacgaa 13736

                  
Query: 363   ggatc 367
             |||||
Sbjct: 13735 ggatc 13731



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  254 bits (128), Expect = 2e-64
 Identities = 197/220 (89%)
 Strand = Plus / Plus

                                                                            
Query: 84       atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 143
                ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| |||
Sbjct: 11880333 atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 11880392

                                                                            
Query: 144      gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 203
                |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 11880393 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 11880452

                                                                            
Query: 204      cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 263
                |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| |||
Sbjct: 11880453 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 11880512

                                                        
Query: 264      tccgcgcacgggtccgccctcgtccgcctcggcgacaccg 303
                ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 11880513 tccgcccacggctccgccctcgtccgcctcggcgacaccg 11880552



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 54/56 (96%)
 Strand = Plus / Plus

                                                                        
Query: 372      gctgtggagttccacatgccgcctatctgctccccgcttgtaagaccaggacggcc 427
                ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 11880838 gctgtggagttccacatgccgcctatctgttccccgcttgtcagaccaggacggcc 11880893



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                            
Query: 303      gccatgctcgcgtcgatcaagctcgaggtgatgtcgccccccgccgagaccccggaccaa 362
                ||||||||||||||||||||||||||||||||||||||| |||  ||| |||| ||| ||
Sbjct: 11880667 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccctccggtgaggcccccgacgaa 11880726

                     
Query: 363      ggatc 367
                |||||
Sbjct: 11880727 ggatc 11880731



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  254 bits (128), Expect = 2e-64
 Identities = 197/220 (89%)
 Strand = Plus / Plus

                                                                            
Query: 84       atggccgcggagaccgacgcgacggcgcccggcgggctcgcgggggagatggaggtcgag 143
                ||||| |||||| || | || |||||| ||||||| ||||| || ||||||||||| |||
Sbjct: 11958740 atggcggcggaggcccaagccacggcggccggcggcctcgccggcgagatggaggtggag 11958799

                                                                            
Query: 144      gcgtaccgccgcctcttccccctcgcgttcctcgagcgccacctccgcgagtccgtccgg 203
                |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| 
Sbjct: 11958800 gcgtaccgccgcctcttccccctcgccttcctcgagcgccacctccgcgaatccgtccgc 11958859

                                                                            
Query: 204      cccgacgcccgacgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc 263
                |||||||| || |||| |||||| |||||||| ||||||||||| |||| |||||| |||
Sbjct: 11958860 cccgacgcgcgccgccccgccgaggcccgcccaaccaccgtcgccctcgccgccgtgtcc 11958919

                                                        
Query: 264      tccgcgcacgggtccgccctcgtccgcctcggcgacaccg 303
                ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 11958920 tccgcccacggctccgccctcgtccgcctcggcgacaccg 11958959



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 54/56 (96%)
 Strand = Plus / Plus

                                                                        
Query: 372      gctgtggagttccacatgccgcctatctgctccccgcttgtaagaccaggacggcc 427
                ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 11959245 gctgtggagttccacatgccgcctatctgttccccgcttgtcagaccaggacggcc 11959300



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                            
Query: 303      gccatgctcgcgtcgatcaagctcgaggtgatgtcgccccccgccgagaccccggaccaa 362
                ||||||||||||||||||||||||||||||||||||||| |||  ||| |||| ||| ||
Sbjct: 11959074 gccatgctcgcgtcgatcaagctcgaggtgatgtcgccctccggtgaggcccccgacgaa 11959133

                     
Query: 363      ggatc 367
                |||||
Sbjct: 11959134 ggatc 11959138



to top

>dbj|AK093294.1| Homo sapiens cDNA FLJ35975 fis, clone TESTI2013401
          Length = 1561

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 223 ccgaagcccgccccaccaccgtcgc 247
           |||||||||||||||||||||||||
Sbjct: 5   ccgaagcccgccccaccaccgtcgc 29



to top

>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome
          Length = 156487

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 206   cgacgcccgacgcctcgccgaagcccgc 233
             ||||||||||||||||||||| ||||||
Sbjct: 72167 cgacgcccgacgcctcgccgacgcccgc 72194



to top

>ref|NM_018114.4| Homo sapiens DALR anticodon binding domain containing 3 (DALRD3),
           transcript variant 2, mRNA
          Length = 2242

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 223 ccgaagcccgccccaccaccgtc 245
           |||||||||||||||||||||||
Sbjct: 43  ccgaagcccgccccaccaccgtc 65



to top

>dbj|AK093204.1| Homo sapiens cDNA FLJ35885 fis, clone TESTI2009018
          Length = 1752

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 223 ccgaagcccgccccaccaccgtc 245
           |||||||||||||||||||||||
Sbjct: 44  ccgaagcccgccccaccaccgtc 66



to top

>gb|AC137630.9| Homo sapiens 3 BAC RP13-131K19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 120173

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 223   ccgaagcccgccccaccaccgtc 245
             |||||||||||||||||||||||
Sbjct: 69461 ccgaagcccgccccaccaccgtc 69439



to top

>gb|L39210.1|HUMIMPD Homo sapiens inosine monophosphate dehydrogenase type II gene, complete
             cds
          Length = 10557

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 223   ccgaagcccgccccaccaccgtc 245
             |||||||||||||||||||||||
Sbjct: 10291 ccgaagcccgccccaccaccgtc 10313



to top

>gb|AE004581.1| Pseudomonas aeruginosa PAO1, section 142 of 529 of the complete genome
          Length = 13203

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 86    ggccgcggagaccgacgcgacg 107
             ||||||||||||||||||||||
Sbjct: 10498 ggccgcggagaccgacgcgacg 10477



to top

>emb|X12644.1|PAFFS Pseudomonas aeruginosa ffs gene for 4.5S RNA
          Length = 957

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 86  ggccgcggagaccgacgcgacg 107
           ||||||||||||||||||||||
Sbjct: 928 ggccgcggagaccgacgcgacg 907



to top

>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16
          Length = 349737

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 231    cgccccaccaccgtcgcgctcggcg 255
              ||||||||||||||||| |||||||
Sbjct: 169352 cgccccaccaccgtcgccctcggcg 169328



to top

>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 101     cgcgacggcgcccggcgggc 120
               ||||||||||||||||||||
Sbjct: 1456935 cgcgacggcgcccggcgggc 1456954



to top

>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome
          Length = 241087

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   ccgtcgcgctcggcgccgtc 260
             ||||||||||||||||||||
Sbjct: 74916 ccgtcgcgctcggcgccgtc 74897



to top

>gb|BC002864.2| Homo sapiens Down syndrome critical region gene 1, mRNA (cDNA clone
           MGC:10263 IMAGE:3944959), complete cds
          Length = 2280

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 277 ccgccctcgtccgcctcggc 296
           ||||||||||||||||||||
Sbjct: 28  ccgccctcgtccgcctcggc 9



to top

>gb|AY325903.1| Homo sapiens calcipressin 1 large isoform (DSCR1) mRNA, complete
           cds
          Length = 2492

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 277 ccgccctcgtccgcctcggc 296
           ||||||||||||||||||||
Sbjct: 260 ccgccctcgtccgcctcggc 241



to top

>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 293     cggcgacaccgccatgctcg 312
               ||||||||||||||||||||
Sbjct: 3956940 cggcgacaccgccatgctcg 3956959



to top

>dbj|AK092184.1| Homo sapiens cDNA FLJ34865 fis, clone NT2NE2014104, highly similar
           to DOWN SYNDROME CRITICAL REGION PROTEIN 1
          Length = 2407

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 277 ccgccctcgtccgcctcggc 296
           ||||||||||||||||||||
Sbjct: 189 ccgccctcgtccgcctcggc 170



to top

>dbj|AP000055.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 26/28, complete
             sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   ccgccctcgtccgcctcggc 296
             ||||||||||||||||||||
Sbjct: 24614 ccgccctcgtccgcctcggc 24633



to top

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 101     cgcgacggcgcccggcgggc 120
               ||||||||||||||||||||
Sbjct: 8315312 cgcgacggcgcccggcgggc 8315293



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 160     tccccctcgcgttcctcgagcgcc 183
               ||||||||||||||| ||||||||
Sbjct: 7491005 tccccctcgcgttccgcgagcgcc 7491028



to top

>ref|NM_004414.5| Homo sapiens Down syndrome critical region gene 1 (DSCR1),
           transcript variant 1, mRNA
          Length = 2457

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 277 ccgccctcgtccgcctcggc 296
           ||||||||||||||||||||
Sbjct: 209 ccgccctcgtccgcctcggc 190



to top

>gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosynthetic gene cluster, complete
             cds
          Length = 77457

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    ccgacgcgacggcgcccggc 116
             ||||||||||||||||||||
Sbjct: 25620 ccgacgcgacggcgcccggc 25639



to top

>emb|AJ332157.1|HSA332157 Homo sapiens genomic sequence surrounding NotI site, clone
           NL1-VL15RS
          Length = 818

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 336 tcgccccccgccgagacccc 355
           ||||||||||||||||||||
Sbjct: 80  tcgccccccgccgagacccc 99



to top

>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 277     ccgccctcgtccgcctcggcgaca 300
               |||||||||||| |||||||||||
Sbjct: 1837776 ccgccctcgtcctcctcggcgaca 1837753



to top

>dbj|AP000327.3| Homo sapiens genomic DNA, chromosome 21 clone:RP1-31L12, complete
             sequence
          Length = 35714

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   ccgccctcgtccgcctcggc 296
             ||||||||||||||||||||
Sbjct: 23793 ccgccctcgtccgcctcggc 23812



to top

>dbj|AP001720.1| Homo sapiens genomic DNA, chromosome 21q, section 64/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    ccgccctcgtccgcctcggc 296
              ||||||||||||||||||||
Sbjct: 206823 ccgccctcgtccgcctcggc 206842



to top

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 232     gccccaccaccgtcgcgctc 251
               ||||||||||||||||||||
Sbjct: 2297530 gccccaccaccgtcgcgctc 2297549



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 232     gccccaccaccgtcgcgctc 251
               ||||||||||||||||||||
Sbjct: 2295073 gccccaccaccgtcgcgctc 2295092



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 101     cgcgacggcgcccggcgggc 120
               ||||||||||||||||||||
Sbjct: 1917016 cgcgacggcgcccggcgggc 1917035



to top

>dbj|AP000170.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             B2344F14-f50E8, segment 6/9, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   ccgccctcgtccgcctcggc 296
             ||||||||||||||||||||
Sbjct: 16582 ccgccctcgtccgcctcggc 16601


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,933,401
Number of Sequences: 3902068
Number of extensions: 1933401
Number of successful extensions: 42929
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42214
Number of HSP's gapped (non-prelim): 715
length of query: 450
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 428
effective length of database: 17,147,199,772
effective search space: 7339001502416
effective search space used: 7339001502416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top