Clone Information

BLAST Search Result

Clone Name	bast62c05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AIRE_MOUSE (Q9Z0E3) Autoimmune regulator (Autoimmune polyendocri...	34	0.16
2	PGTL_PELAC (P80563) Pyrogallol hydroxytransferase large subunit ...	33	0.21
3	K1H8_HUMAN (O76015) Keratin, type I cuticular Ha8 (Hair keratin,...	32	0.46
4	SCRL1_ORYSA (Q84TX2) SCAR-like protein 1	32	0.46
5	EFNB3_MOUSE (O35393) Ephrin-B3 precursor	32	0.79
6	EFNB3_HUMAN (Q15768) Ephrin-B3 precursor (EPH-related receptor t...	32	0.79
7	RSN_HUMAN (Q9HD89) Resistin precursor (Cysteine-rich secreted pr...	31	1.0
8	RGL2_MOUSE (Q61193) Ral guanine nucleotide dissociation stimulat...	30	1.8
9	MP2K7_HUMAN (O14733) Dual specificity mitogen-activated protein ...	30	1.8
10	PHOSP_SENDO (O57285) Phosphoprotein (Protein P)	30	2.3
11	PHOSP_SENDA (Q9DUE2) Phosphoprotein (Protein P)	30	2.3
12	DKKL1_HUMAN (Q9UK85) Dickkopf-like protein 1 precursor (Soggy-1 ...	30	2.3
13	V_SENDO (P69287) Protein V	30	2.3
14	V_SENDA (Q9DUE1) Protein V	30	2.3
15	W_SENDO (P69288) Protein W	30	2.3
16	W_SENDA (P69286) Protein W	30	2.3
17	RGL2_HUMAN (O15211) Ral guanine nucleotide dissociation stimulat...	30	2.3
18	PPCK_BACHK (Q6HCB3) Phosphoenolpyruvate carboxykinase [ATP] (EC ...	30	2.3
19	GP156_HUMAN (Q8NFN8) Probable G-protein coupled receptor 156 (GA...	30	3.0
20	PLCB3_HUMAN (Q01970) 1-phosphatidylinositol-4,5-bisphosphate pho...	29	3.9
21	MRIP_HUMAN (Q6WCQ1) Myosin phosphatase Rho-interacting protein (...	29	3.9
22	PLEC1_RAT (P30427) Plectin-1 (PLTN) (PCN)	29	3.9
23	PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal prot...	29	3.9
24	M3K10_HUMAN (Q02779) Mitogen-activated protein kinase kinase kin...	29	3.9
25	DED1_USTMA (Q4P733) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)	29	3.9
26	PLEC1_CRIGR (Q9JI55) Plectin-1 (PLTN) (PCN) (300-kDa intermediat...	29	3.9
27	ATS2_HUMAN (O95450) ADAMTS-2 precursor (EC 3.4.24.14) (A disinte...	29	3.9
28	DYNA_RAT (P28023) Dynactin-1 (150 kDa dynein-associated polypept...	29	5.1
29	IF4G1_RABIT (P41110) Eukaryotic translation initiation factor 4 ...	29	5.1
30	DYHC_DICDI (P34036) Dynein heavy chain, cytosolic (DYHC)	29	5.1
31	HEM1_CHLVI (P28462) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)	29	5.1
32	ELN_MOUSE (P54320) Elastin precursor (Tropoelastin)	29	5.1
33	IF2_SYNY3 (P72689) Translation initiation factor IF-2	28	6.7
34	NPBL_COPCI (Q00333) Protein rad9 (SCC2 homolog)	28	6.7
35	CACB1_RAT (P54283) Voltage-dependent L-type calcium channel beta...	28	6.7
36	PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precu...	28	6.7
37	ITF2_HUMAN (P15884) Transcription factor 4 (Immunoglobulin trans...	28	8.8
38	SMG7_MOUSE (Q5RJH6) Protein SMG7 (SMG-7 homolog) (EST1-like prot...	28	8.8
39	ITF2_CANFA (P15881) Transcription factor 4 (Immunoglobulin trans...	28	8.8
40	ITF2_MOUSE (Q60722) Transcription factor 4 (Immunoglobulin trans...	28	8.8
41	TOP3A_HUMAN (Q13472) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DN...	28	8.8
42	SMCA2_HUMAN (P51531) Probable global transcription activator SNF...	28	8.8
43	CWC27_ASPFU (Q4WE62) Peptidyl-prolyl isomerase cwc27 (EC 5.2.1.8)	28	8.8
44	ITF2_RAT (Q62655) Transcription factor 4 (Immunoglobulin transcr...	28	8.8
45	SMG7_HUMAN (Q92540) Protein SMG7 (SMG-7 homolog) (EST1-like prot...	28	8.8

>AIRE_MOUSE (Q9Z0E3) Autoimmune regulator (Autoimmune polyendocrinopathy|
           candidiasis ectodermal dystrophy protein homolog)
           (APECED protein homolog)
          Length = 552

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = +1

Query: 133 PQNPTPLLLPVRAASSPHSNSAERPPRRPPG-LQSTLWPLGHPDTLLVPEIER-----WA 294
           P+   P  L  ++ SSP S+   +PP++P G L+S   PLG+    +   ++R       
Sbjct: 139 PRATPPATLASKSVSSPGSHLKTKPPKKPDGNLESQHLPLGNGIQTMAASVQRAVTVASG 198

Query: 295 DKPGNR 312
           D PG R
Sbjct: 199 DVPGTR 204

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>PGTL_PELAC (P80563) Pyrogallol hydroxytransferase large subunit (EC 1.97.1.2)|
           (Transhydroxylase alpha subunit)
          Length = 874

 Score = 33.5 bits (75), Expect = 0.21
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = -1

Query: 256 GVPAATEW----TAGPGVAAAASRRCWSEERTRRAQGGAGEWDSGDGLGLGGACRA 101
           G P   EW    +  P     A  R W+++ T  A GG G W        GGACRA
Sbjct: 312 GTPKTCEWAEEESGVPACEIRALARQWAKKNTYLAAGGLGGW--------GGACRA 359

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>K1H8_HUMAN (O76015) Keratin, type I cuticular Ha8 (Hair keratin, type I Ha8)|
          Length = 456

 Score = 32.3 bits (72), Expect = 0.46
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 146 LPCSSLCAPRPLLT-PTAPRGRRGDPRACSPLCGRWDTRTRF 268
           LPC+    P   +T P APR   G    C P CG   T +RF
Sbjct: 415 LPCNPCSTPPSCVTAPCAPRPSCGPCTTCGPTCGASTTGSRF 456

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>SCRL1_ORYSA (Q84TX2) SCAR-like protein 1|
          Length = 2097

 Score = 32.3 bits (72), Expect = 0.46
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 160  PVRAASSPHSNSAERPPRRPPGLQSTLWPLGHP 258
            PV   + P SN +   P++PP L   LW LG P
Sbjct: 1598 PVPPPNEPFSNVSYEDPQKPPPLPPLLWRLGKP 1630

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>EFNB3_MOUSE (O35393) Ephrin-B3 precursor|
          Length = 340

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -1

Query: 220 GVAAAASRRCWSEERTRRAQG---GAGEWDSGDGLGLGG 113
           GVA A    CW   R + ++    G G +  G  LGLGG
Sbjct: 241 GVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGG 279

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>EFNB3_HUMAN (Q15768) Ephrin-B3 precursor (EPH-related receptor tyrosine kinase|
           ligand 8) (LERK-8) (EPH-related receptor transmembrane
           ligand ELK-L3)
          Length = 340

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -1

Query: 220 GVAAAASRRCWSEERTRRAQG---GAGEWDSGDGLGLGG 113
           GVA A    CW   R + ++    G G +  G  LGLGG
Sbjct: 241 GVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGG 279

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>RSN_HUMAN (Q9HD89) Resistin precursor (Cysteine-rich secreted protein FIZZ3)|
           (Adipose tissue-specific secretory factor) (ADSF)
           (C/EBP-epsilon-regulated myeloid-specific secreted
           cysteine-rich protein) (Cysteine-rich secreted protein
           A12-alpha-like 2)
          Length = 108

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 18/54 (33%), Positives = 21/54 (38%)
 Frame = +2

Query: 131 VPRIPLPCSSLCAPRPLLTPTAPRGRRGDPRACSPLCGRWDTRTRFWCRRSSAG 292
           +  I L C S+ +   L T   PRG       C   CG WD R    C    AG
Sbjct: 44  ISSIGLECQSVTSRGDLAT--CPRGFAVTGCTCGSACGSWDVRAETTCHCQCAG 95

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>RGL2_MOUSE (Q61193) Ral guanine nucleotide dissociation stimulator-like 2|
           (RalGDS-like factor) (RAS-associated protein RAB2L)
          Length = 778

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 186 LQQRREAAAATPGPAVHSVAAGTPGHASGAG 278
           L+QRR  +AATPG      A+GTP    G G
Sbjct: 731 LRQRRRPSAATPGSHSGPSASGTPPSEGGGG 761

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>MP2K7_HUMAN (O14733) Dual specificity mitogen-activated protein kinase kinase 7|
           (EC 2.7.12.2) (MAP kinase kinase 7) (MAPKK 7) (MAPK/ERK
           kinase 7) (JNK-activating kinase 2) (c-Jun N-terminal
           kinase kinase 2) (JNK kinase 2) (JNKK 2)
          Length = 419

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +1

Query: 127 VRPQNPTPLL-LPVRAASSPHSNSAERPPRRPPGLQSTLWPLGHPDTLLVPEIERWADKP 303
           + PQ P P L LP+       S S+E  P+ P         LG P TL  P         
Sbjct: 34  ISPQRPRPTLQLPLANDGGSRSPSSESSPQHPTPPARPRHMLGLPSTLFTP--------- 84

Query: 304 GNRLRPVELERIVKELRKR 360
              +  +E+++ ++E+ K+
Sbjct: 85  -RSMESIEIDQKLQEIMKQ 102

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>PHOSP_SENDO (O57285) Phosphoprotein (Protein P)|
          Length = 568

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 145 TPLLLPVRAASSP-HSNSAERPPRRPPGLQ 231
           TP+++P   +  P H NS   PPR+PP  Q
Sbjct: 240 TPVVVPSTRSPPPDHDNSTRSPPRKPPTTQ 269

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>PHOSP_SENDA (Q9DUE2) Phosphoprotein (Protein P)|
          Length = 568

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 145 TPLLLPVRAASSP-HSNSAERPPRRPPGLQ 231
           TP+++P   +  P H NS   PPR+PP  Q
Sbjct: 240 TPVVVPSTRSPPPDHDNSTRSPPRKPPTTQ 269

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>DKKL1_HUMAN (Q9UK85) Dickkopf-like protein 1 precursor (Soggy-1 protein)|
           (SGY-1)
          Length = 242

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = +1

Query: 268 LVPEIERWADKPGNRLRPVELERIVKELRKRRRHRQALEVSEWMSAKGH 414
           LVP I++  D     L P     I+K L +RR H+ ALE   W+S K H
Sbjct: 149 LVP-IQKATDSFHTELHPRVAFWIIK-LPRRRSHQDALEGGHWLSEKRH 195

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>V_SENDO (P69287) Protein V|
          Length = 369

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 145 TPLLLPVRAASSP-HSNSAERPPRRPPGLQ 231
           TP+++P   +  P H NS   PPR+PP  Q
Sbjct: 240 TPVVVPSTRSPPPDHDNSTRSPPRKPPTTQ 269

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>V_SENDA (Q9DUE1) Protein V|
          Length = 369

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 145 TPLLLPVRAASSP-HSNSAERPPRRPPGLQ 231
           TP+++P   +  P H NS   PPR+PP  Q
Sbjct: 240 TPVVVPSTRSPPPDHDNSTRSPPRKPPTTQ 269

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>W_SENDO (P69288) Protein W|
          Length = 318

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 145 TPLLLPVRAASSP-HSNSAERPPRRPPGLQ 231
           TP+++P   +  P H NS   PPR+PP  Q
Sbjct: 240 TPVVVPSTRSPPPDHDNSTRSPPRKPPTTQ 269

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>W_SENDA (P69286) Protein W|
          Length = 318

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 145 TPLLLPVRAASSP-HSNSAERPPRRPPGLQ 231
           TP+++P   +  P H NS   PPR+PP  Q
Sbjct: 240 TPVVVPSTRSPPPDHDNSTRSPPRKPPTTQ 269

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>RGL2_HUMAN (O15211) Ral guanine nucleotide dissociation stimulator-like 2|
           (RalGDS-like factor) (RAS-associated protein RAB2L)
          Length = 777

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 186 LQQRREAAAATPGPAVHSVAAGTPGHASGAG 278
           L+QRR ++ ATPG      A+GTP    G G
Sbjct: 730 LRQRRRSSTATPGVTSGPSASGTPPSEGGGG 760

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>PPCK_BACHK (Q6HCB3) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP|
           carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK)
          Length = 528

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +1

Query: 163 VRAASSPHSNSAERPPRRPPGLQSTLWPLGHPDTLLVPEIERWADKPGNRLRPVEL 330
           ++AA S      E       GL+  L   G PD +L+PE + WADK   + + +EL
Sbjct: 448 IQAALSGELAKTETAKHDIFGLEVPLHVPGVPDEVLMPE-QTWADKAAYKAKAIEL 502

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>GP156_HUMAN (Q8NFN8) Probable G-protein coupled receptor 156 (GABAB-related|
           G-protein coupled receptor) (G-protein coupled receptor
           PGR28)
          Length = 814

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +1

Query: 133 PQNPTPLLLPVRAASSP----HSNSAERPPRRPPGLQSTL 240
           P NP+  LLP R  S P    H  ++E PP R   + S +
Sbjct: 506 PMNPSQSLLPDRGGSDPQRQRHLENSEEPPERRSRVSSVI 545

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>PLCB3_HUMAN (Q01970) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
            beta 3 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
            (Phospholipase C-beta-3) (PLC-beta-3)
          Length = 1234

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 17/83 (20%)
 Frame = +1

Query: 175  SSPHSNSAERP----PRRPPG-----LQSTLWPLGHPDTLLVPEIERWADKPGNRLRP-- 321
            S P SN    P    PRRPPG       ++L   G  D L+   +   A  P + LR   
Sbjct: 902  SQPSSNPTPSPLDASPRRPPGPTTSPASTSLSSPGQRDDLIASILSEVAPTPLDELRGHK 961

Query: 322  --VEL----ERIVKELRKRRRHR 372
              V+L    ER ++ELRK+ + +
Sbjct: 962  ALVKLRSRQERDLRELRKKHQRK 984

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>MRIP_HUMAN (Q6WCQ1) Myosin phosphatase Rho-interacting protein|
           (Rho-interacting protein 3) (M-RIP) (RIP3) (p116Rip)
          Length = 1024

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 133 PQNPTPLLLPVRAASSPHSNSAERPPRRPPGLQSTLW 243
           PQ P P  + V ++SS  S+S+     + P  +STLW
Sbjct: 167 PQEPGPAKVAVTSSSSSSSSSSIPSAEKVPTTKSTLW 203

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>PLEC1_RAT (P30427) Plectin-1 (PLTN) (PCN)|
          Length = 4687

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 302  GLSAQRSISGTRSVSGCPSGHRVDCRPGGRRGGLSA 195
            G  +  S+SG+ S +G  +G R   R G RRG   A
Sbjct: 4613 GYYSPYSVSGSGSTAGSRTGSRTGSRAGSRRGSFDA 4648

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>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)|
          Length = 4684

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 302  GLSAQRSISGTRSVSGCPSGHRVDCRPGGRRGGLSA 195
            G  +  S+SG+ S +G  +G R   R G RRG   A
Sbjct: 4610 GYYSPYSVSGSGSTAGSRTGSRTGSRAGSRRGSFDA 4645

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>M3K10_HUMAN (Q02779) Mitogen-activated protein kinase kinase kinase 10 (EC|
           2.7.11.25) (Mixed lineage kinase 2) (Protein kinase MST)
          Length = 954

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +1

Query: 163 VRAASSPHSNSAERPPRRPPGLQSTLWPLGHPDTLLVPEIERWADKPGNRLRPVELERIV 342
           +R+ S   + +A  PP  PP    T  P  +P  L+  E+E +   PG  L P  +  + 
Sbjct: 762 LRSDSDEAAPAAPSPPPSPPAPTPTPSPSTNP--LVDLELESFKKDPGQSLTPTHVTAVC 819

Query: 343 KELRKRRR 366
              R  RR
Sbjct: 820 AVSRGHRR 827

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>DED1_USTMA (Q4P733) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)|
          Length = 672

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 226 GPGVAAAASRRCWSEERTRRAQGGAGEWDSGDGLGLGGA 110
           G G AA A+   +        +GGAG WD+    G GGA
Sbjct: 79  GNGPAAPAAPAAFQSFNRGAPRGGAGGWDAPSSGGYGGA 117

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>PLEC1_CRIGR (Q9JI55) Plectin-1 (PLTN) (PCN) (300-kDa intermediate|
            filament-associated protein) (IFAP300) (Fragment)
          Length = 4473

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 302  GLSAQRSISGTRSVSGCPSGHRVDCRPGGRRGGLSA 195
            G  +  S+SG+ S +G  +G R   R G RRG   A
Sbjct: 4399 GYYSPYSVSGSGSTTGSRTGSRTGSRAGSRRGSFDA 4434

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>ATS2_HUMAN (O95450) ADAMTS-2 precursor (EC 3.4.24.14) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 2) (ADAM-TS
            2) (ADAM-TS2) (Procollagen I/II amino
            propeptide-processing enzyme) (Procollagen I
            N-proteinase) (PC I-NP) (Procollagen N-en
          Length = 1211

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
 Frame = +1

Query: 127  VRPQNPTPLLLPVRAASS------PHSNSAERPPRRPPGLQSTLWPLGHPDTLLVPEIER 288
            VRP   TPL +P+ A+S+      P +N+ +  P +  GL+  + P         P +  
Sbjct: 1132 VRPSPSTPLEVPLNASSTNATEDHPETNAVDE-PYKIHGLEDEVQP---------PNLIP 1181

Query: 289  WADKPGNRLRPVELERIVKELRKR 360
                P  + R   ++ ++ E+RK+
Sbjct: 1182 RRPSPYEKTRNQRIQELIDEMRKK 1205

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>DYNA_RAT (P28023) Dynactin-1 (150 kDa dynein-associated polypeptide) (DP-150)|
            (DAP-150) (p150-glued)
          Length = 1280

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +1

Query: 196  AERPPRRPPGLQSTLWPLGHPDTLLVPEIERWADKPGNRLRPVELERIVKELRK 357
            AERPP +PP ++   WP       L  EI    D  G  L+  + E ++KEL+K
Sbjct: 913  AERPPSKPPPVEP--WP-----AALRAEI---TDAEGLGLKLEDRETVIKELKK 956

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>IF4G1_RABIT (P41110) Eukaryotic translation initiation factor 4 gamma 1|
           (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220)
          Length = 1402

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -1

Query: 253 VPAATEWTAGPGVAAAASRRCWSEERTRRAQGGAGEWDSG 134
           VP+AT  TA P  + A       EE     + GA E D G
Sbjct: 245 VPSATPATAPPATSPAQEEEGEEEEEEEEGEAGAAESDKG 284

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>DYHC_DICDI (P34036) Dynein heavy chain, cytosolic (DYHC)|
          Length = 4725

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 8/33 (24%), Positives = 24/33 (72%)
 Frame = +1

Query: 301  PGNRLRPVELERIVKELRKRRRHRQALEVSEWM 399
            PG++L+P++++++ K++++  + R  +   EW+
Sbjct: 2219 PGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWV 2251

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>HEM1_CHLVI (P28462) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)|
          Length = 424

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 158 SLCAPRPLLTPTAPRGRRGDPRACSPL 238
           S C PR   T ++P GR   PRAC  L
Sbjct: 198 STCTPRTPGTSSSPTGRNPRPRACEEL 224

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>ELN_MOUSE (P54320) Elastin precursor (Tropoelastin)|
          Length = 860

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -1

Query: 256 GVPAATEWTAGPGVAAAASRRCWSEERTRRAQGGAGEWDSGDGLGLGG 113
           GVP      A P  AAAA++   + +  +   GGAG   +G GLG GG
Sbjct: 700 GVPGRVAGAAPPAAAAAAAKA--AAKAAQYGLGGAGGLGAG-GLGAGG 744

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>IF2_SYNY3 (P72689) Translation initiation factor IF-2|
          Length = 1001

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = +1

Query: 133 PQNPTPLLLPVRAASSPHSNSAERPPRR-PPGLQSTLWPLGHPDTLLVPEIERWADKPGN 309
           P+ PTP   PV  AS+P     E P +  P  +     PL  P    VP ++    KP  
Sbjct: 112 PKAPTPPQPPVAKASAPKIQKQEEPAQEAPKSVAPPTQPLAPPP---VPSLQSPPSKPAP 168

Query: 310 RLRPVE 327
              P +
Sbjct: 169 PTPPAK 174

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>NPBL_COPCI (Q00333) Protein rad9 (SCC2 homolog)|
          Length = 2157

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 142 PTPLLLPVRAASSPHSNSAERPPRRPPGLQSTLWPLGHPDTLLVPE 279
           PTP    +  +SS  + +   PP+ PP  Q+   PL HP    +P+
Sbjct: 189 PTPPPPGISTSSSSLAFALGGPPQPPPRQQTVTQPLFHPTQAPLPQ 234

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>CACB1_RAT (P54283) Voltage-dependent L-type calcium channel beta-1 subunit|
           (CAB1) (Calcium channel, voltage-dependent, beta 1
           subunit)
          Length = 597

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +1

Query: 205 PPRRPPGLQSTLWPLGHPDTLLVPEIERWADKPGNR 312
           P   PPG   TLW L   DT         AD PG+R
Sbjct: 480 PSNHPPGRAGTLWALSRQDTF-------DADTPGSR 508

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>PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precursor (PELP)|
          Length = 426

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +1

Query: 130 RPQNPTPLLLPVR-----AASSPHSNSAERPPRRPPGLQ 231
           +P +P+PL+ P          SP   SA++PP+ PP  Q
Sbjct: 138 KPSSPSPLVKPPPPPPSPCKPSPPDQSAKQPPQPPPAKQ 176

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>ITF2_HUMAN (P15884) Transcription factor 4 (Immunoglobulin transcription|
           factor 2) (ITF-2) (SL3-3 enhancer factor 2) (SEF-2)
          Length = 667

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 136 QNPTPLLLPVRAASSPHSNSAERPPR-RPPGLQ 231
           Q P P L PV++A+SP  N  + P R  PPGLQ
Sbjct: 471 QVPVPQL-PVQSATSPDLNPPQDPYRGMPPGLQ 502

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>SMG7_MOUSE (Q5RJH6) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)|
          Length = 1138

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
 Frame = +1

Query: 169  AASSPHSNSAERPPRRPPGLQ------STLWPLGHPDTLLVPEIERW-ADKP 303
            A+ SPHS++    P  PP         S   P+G PD       +RW  DKP
Sbjct: 1001 ASQSPHSSNPSSLPSSPPTHNHNSAPFSNFGPIGTPDNRDRRPADRWKTDKP 1052

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>ITF2_CANFA (P15881) Transcription factor 4 (Immunoglobulin transcription|
           factor 2) (ITF-2) (Thyroglobulin promoter transcription
           factor TFE)
          Length = 642

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 136 QNPTPLLLPVRAASSPHSNSAERPPR-RPPGLQ 231
           Q P P L PV++A+SP  N  + P R  PPGLQ
Sbjct: 446 QVPVPQL-PVQSATSPDLNPPQDPYRGMPPGLQ 477

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>ITF2_MOUSE (Q60722) Transcription factor 4 (Immunoglobulin transcription|
           factor 2) (ITF-2) (MITF-2) (SL3-3 enhancer factor 2)
           (SEF-2) (Class A helix-loop-helix transcription factor
           ME2)
          Length = 670

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 136 QNPTPLLLPVRAASSPHSNSAERPPR-RPPGLQ 231
           Q P P L PV++A+SP  N  + P R  PPGLQ
Sbjct: 470 QVPVPQL-PVQSATSPDLNPPQDPYRGMPPGLQ 501

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>TOP3A_HUMAN (Q13472) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DNA topoisomerase|
           III alpha)
          Length = 1001

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 219 PGPAVHSVAAGTPGHASGAGDRAL 290
           PGP +H    G PG  SG+G   L
Sbjct: 875 PGPGIHLGGFGNPGDGSGSGTSCL 898

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>SMCA2_HUMAN (P51531) Probable global transcription activator SNF2L2 (EC|
           3.6.1.-) (ATP-dependent helicase SMARCA2) (SNF2-alpha)
           (SWI/SNF-related matrix associated actin dependent
           regulator of chromatin subfamily A member 2) (hBRM)
          Length = 1586

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +1

Query: 139 NPTPLLLPVRAASSPHSNSAERPPRRPPGLQSTLWPLGHPDTLLVP 276
           +P+PL  P    SSP S     PP+ PP     L P G P  +  P
Sbjct: 124 HPSPLGAPEHV-SSPMSGGGPTPPQMPPSQPGALIP-GDPQAMSQP 167

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>CWC27_ASPFU (Q4WE62) Peptidyl-prolyl isomerase cwc27 (EC 5.2.1.8)|
          Length = 559

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 130 RPQNPTPLL-LPVRAASSPHSNSAERPPRRPPGLQSTL 240
           RP+ P PL  LP+    SP    A  PP+ PP  QS L
Sbjct: 293 RPKTPDPLTQLPLPDPESP----ARSPPQSPPARQSIL 326

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>ITF2_RAT (Q62655) Transcription factor 4 (Immunoglobulin transcription|
           factor 2) (ITF-2) (RITF-2) (SL3-3 enhancer factor 2)
           (SEF-2) (R8f DNA-binding protein)
          Length = 589

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 136 QNPTPLLLPVRAASSPHSNSAERPPR-RPPGLQ 231
           Q P P L PV++A+SP  N  + P R  PPGLQ
Sbjct: 389 QVPVPQL-PVQSATSPDLNPPQDPYRGMPPGLQ 420

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>SMG7_HUMAN (Q92540) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)|
          Length = 1137

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
 Frame = +1

Query: 169  AASSPHSNSAERPPRRPPGLQ------STLWPLGHPDTLLVPEIERW-ADKP 303
            A+ SPHS++    P  PP         S   P+G PD       +RW  DKP
Sbjct: 1000 ASQSPHSSNPSSLPSSPPTHNHNSVPFSNFGPIGTPDNRDRRTADRWKTDKP 1051


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,253,849
Number of Sequences: 219361
Number of extensions: 823503
Number of successful extensions: 5475
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 4713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5452
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result