ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast62c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPA1_ASPNG (P20584) Phosphate-repressible acid phosphatase precu... 30 1.7
2MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment) 28 8.2

>PPA1_ASPNG (P20584) Phosphate-repressible acid phosphatase precursor (EC|
           3.1.3.2) (Acid phosphatase PII)
          Length = 436

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 141 RWADDPAQLAKLVAGYVSHFADYCAARA 224
           RW  DP  L +  AG +SHF D+ + R+
Sbjct: 101 RWGKDPRNLKQHGAGLLSHFQDWSSGRS 128



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>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)|
          Length = 1513

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 148  PTTRRSSPSWWPATCPTSPTTA 213
            PTT  +SP+  P T  TSPTT+
Sbjct: 1440 PTTSTTSPTTSPTTSTTSPTTS 1461


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.127    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,415,952
Number of Sequences: 219361
Number of extensions: 197632
Number of successful extensions: 848
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
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