ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62c01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06, complete sequence Length = 139139 Score = 107 bits (54), Expect = 2e-20 Identities = 96/110 (87%) Strand = Plus / Minus Query: 57 gcgatggagctggaggcggcgaggcggcgcttccagctctggctccgcgggctgcggtcg 116 ||||||||| |||||||||||| |||||| ||||| ||||||||||||||||||||| | Sbjct: 28647 gcgatggaggtggaggcggcgacgcggcggttccacctctggctccgcgggctgcggggg 28588 Query: 117 ctgcgccgcgacctccgcacggcgcgctgggccgacgacccggcgcagct 166 ||||| ||||| ||||| |||| || ||||| ||||||||||| ||||| Sbjct: 28587 ctgcggcgcgagctccgggcggcccggtgggcggacgacccggcccagct 28538 Score = 42.1 bits (21), Expect = 0.80 Identities = 27/29 (93%) Strand = Plus / Minus Query: 213 gcggcgcgcgcggagctggacccggtgtg 241 |||||||| |||||| ||||||||||||| Sbjct: 28491 gcggcgcgggcggagatggacccggtgtg 28463
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 107 bits (54), Expect = 2e-20 Identities = 96/110 (87%) Strand = Plus / Minus Query: 57 gcgatggagctggaggcggcgaggcggcgcttccagctctggctccgcgggctgcggtcg 116 ||||||||| |||||||||||| |||||| ||||| ||||||||||||||||||||| | Sbjct: 27664089 gcgatggaggtggaggcggcgacgcggcggttccacctctggctccgcgggctgcggggg 27664030 Query: 117 ctgcgccgcgacctccgcacggcgcgctgggccgacgacccggcgcagct 166 ||||| ||||| ||||| |||| || ||||| ||||||||||| ||||| Sbjct: 27664029 ctgcggcgcgagctccgggcggcccggtgggcggacgacccggcccagct 27663980 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 ggcgatggagctggaggcggcg 77 |||||||||||||||||||||| Sbjct: 29239979 ggcgatggagctggaggcggcg 29240000 Score = 42.1 bits (21), Expect = 0.80 Identities = 27/29 (93%) Strand = Plus / Minus Query: 213 gcggcgcgcgcggagctggacccggtgtg 241 |||||||| |||||| ||||||||||||| Sbjct: 27663933 gcggcgcgggcggagatggacccggtgtg 27663905 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 agctcgccaagctggtggccg 183 ||||||||||||||||||||| Sbjct: 19955582 agctcgccaagctggtggccg 19955602
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 46.1 bits (23), Expect = 0.051 Identities = 23/23 (100%) Strand = Plus / Minus Query: 138 gcgcgctgggccgacgacccggc 160 ||||||||||||||||||||||| Sbjct: 125784 gcgcgctgggccgacgacccggc 125762
>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14 Length = 347894 Score = 46.1 bits (23), Expect = 0.051 Identities = 23/23 (100%) Strand = Plus / Plus Query: 138 gcgcgctgggccgacgacccggc 160 ||||||||||||||||||||||| Sbjct: 154887 gcgcgctgggccgacgacccggc 154909
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 46.1 bits (23), Expect = 0.051 Identities = 23/23 (100%) Strand = Plus / Minus Query: 138 gcgcgctgggccgacgacccggc 160 ||||||||||||||||||||||| Sbjct: 17778 gcgcgctgggccgacgacccggc 17756
>gb|AC136216.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0022J22, complete sequence Length = 142854 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 ggcgatggagctggaggcggcg 77 |||||||||||||||||||||| Sbjct: 123438 ggcgatggagctggaggcggcg 123459
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08, complete sequence Length = 142196 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 ggcgatggagctggaggcggcg 77 |||||||||||||||||||||| Sbjct: 18636 ggcgatggagctggaggcggcg 18657
>dbj|AK073891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075A18, full insert sequence Length = 3039 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 ggcgatggagctggaggcggcg 77 |||||||||||||||||||||| Sbjct: 274 ggcgatggagctggaggcggcg 295
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 145 gggccgacgacccggcgcagctcgcc 170 |||||| ||||||||||||||||||| Sbjct: 2577457 gggccgccgacccggcgcagctcgcc 2577432 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Minus Query: 136 cggcgcgctgggccgacgacccggc 160 ||||||||||||||| ||||||||| Sbjct: 634355 cggcgcgctgggccggcgacccggc 634331 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cgccgactactgcgcggcgc 219 |||||||||||||||||||| Sbjct: 1844592 cgccgactactgcgcggcgc 1844611
>ref|NM_196719.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0015F09b.13), mRNA Length = 243 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 gcgatggagctggaggcggcg 77 ||||||||||||||||||||| Sbjct: 70 gcgatggagctggaggcggcg 90
>gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668F02, complete sequence Length = 178061 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 agctcgccaagctggtggccg 183 ||||||||||||||||||||| Sbjct: 96746 agctcgccaagctggtggccg 96766
>ref|XM_362592.1| Magnaporthe grisea 70-15 hypothetical protein (MG08175.4) partial mRNA Length = 915 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 70 aggcggcgaggcggcgcttcc 90 ||||||||||||||||||||| Sbjct: 288 aggcggcgaggcggcgcttcc 308
>gb|AY452667.1| Chlamydomonas reinhardtii flagellar radial spoke nucleoside diphosphate kinase mRNA, complete cds Length = 2219 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 146 ggccgacgacccggcgcagct 166 ||||||||||||||||||||| Sbjct: 1186 ggccgacgacccggcgcagct 1206
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 gacccggcgcagctcgccaag 173 ||||||||||||||||||||| Sbjct: 1931081 gacccggcgcagctcgccaag 1931101
>gb|AC073391.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0015F09b, complete sequence Length = 108964 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 gcgatggagctggaggcggcg 77 ||||||||||||||||||||| Sbjct: 67269 gcgatggagctggaggcggcg 67289
>gb|AE012121.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 29 of 460 of the complete genome Length = 10770 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 158 ggcgcagctcgccaagctggtggcc 182 ||||||||| ||||||||||||||| Sbjct: 9841 ggcgcagctggccaagctggtggcc 9865
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 158 ggcgcagctcgccaagctggtggcc 182 ||||||||| ||||||||||||||| Sbjct: 319998 ggcgcagctggccaagctggtggcc 320022 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 121 gccgcgacctccgcacggcgcgctgggc 148 ||||||||| | |||||||||||||||| Sbjct: 3236759 gccgcgaccacagcacggcgcgctgggc 3236786
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 gcgatggagctggaggcggcg 77 ||||||||||||||||||||| Sbjct: 15483923 gcgatggagctggaggcggcg 15483943
>dbj|AK071645.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105M22, full insert sequence Length = 1276 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 gcgatggagctggaggcggcg 77 ||||||||||||||||||||| Sbjct: 258 gcgatggagctggaggcggcg 278
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 gcgatggagctggaggcggcg 77 ||||||||||||||||||||| Sbjct: 15492164 gcgatggagctggaggcggcg 15492184
>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete sequence Length = 1194300 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ctggaggcggcgaggcggcg 85 |||||||||||||||||||| Sbjct: 1134171 ctggaggcggcgaggcggcg 1134190
>gb|AY426175.1| Cryptococcus neoformans var. neoformans Sec53p (SEC53) gene, complete cds Length = 3185 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ctggaggcggcgaggcggcg 85 |||||||||||||||||||| Sbjct: 845 ctggaggcggcgaggcggcg 864
>gb|AY421721.1| Cryptococcus neoformans var. neoformans putative O-acetyl-coA transporter (CAS8) gene, complete cds Length = 2460 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ctggaggcggcgaggcggcg 85 |||||||||||||||||||| Sbjct: 68 ctggaggcggcgaggcggcg 49
>ref|XM_580467.2| PREDICTED: Bos taurus similar to Protein disulfide-isomerase A2 precursor (PDIp) (LOC504356), mRNA Length = 1635 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ccagctctggctccgcgggc 108 |||||||||||||||||||| Sbjct: 352 ccagctctggctccgcgggc 333
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ggaggcggcgaggcggcgct 87 |||||||||||||||||||| Sbjct: 4087946 ggaggcggcgaggcggcgct 4087965
>emb|AL606642.3|OSJN00073 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H06, complete sequence Length = 143730 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tggaggcggcgaggcggcgc 86 |||||||||||||||||||| Sbjct: 20000 tggaggcggcgaggcggcgc 19981
>gb|AE012255.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 163 of 460 of the complete genome Length = 12201 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 121 gccgcgacctccgcacggcgcgctgggc 148 ||||||||| | |||||||||||||||| Sbjct: 6630 gccgcgaccacagcacggcgcgctgggc 6603
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 cgggcgatggagctggaggcggcg 77 |||||||||||| ||||||||||| Sbjct: 1329919 cgggcgatggagatggaggcggcg 1329942
>gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0061L19, from chromosome 3, complete sequence Length = 153322 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ggaggcggcgaggcggcgct 87 |||||||||||||||||||| Sbjct: 11422 ggaggcggcgaggcggcgct 11403
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 cgacccggcgcagctcgccaagct 175 ||||| |||||||||||||||||| Sbjct: 2043521 cgacctggcgcagctcgccaagct 2043498
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tggaggcggcgaggcggcgc 86 |||||||||||||||||||| Sbjct: 489032 tggaggcggcgaggcggcgc 489013
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ggctgcggtcgctgcgccgc 125 |||||||||||||||||||| Sbjct: 4690548 ggctgcggtcgctgcgccgc 4690567
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ggaggcggcgaggcggcgct 87 |||||||||||||||||||| Sbjct: 4088057 ggaggcggcgaggcggcgct 4088076
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 56 ggcgatggagctggaggcggcgaggcggcgct 87 |||||||| ||||| | ||||||||||||||| Sbjct: 33953587 ggcgatggtgctggtgacggcgaggcggcgct 33953556
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 3.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 148 ccgacgacccggcgcagctcgccaagctggtg 179 ||||||||||||||| ||||||| ||||||| Sbjct: 1410955 ccgacgacccggcgcggctcgccgcgctggtg 1410986
>ref|XM_215826.3| PREDICTED: Rattus norvegicus pantothenate kinase 2 (Hallervorden-Spatz syndrome) (predicted) (Pank2_predicted), mRNA Length = 1878 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ggaggcggcgaggcggcgct 87 |||||||||||||||||||| Sbjct: 148 ggaggcggcgaggcggcgct 167
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ggagctggaggcggcgaggc 81 |||||||||||||||||||| Sbjct: 1818311 ggagctggaggcggcgaggc 1818292
>dbj|AP003221.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0003D09 Length = 161970 Score = 40.1 bits (20), Expect = 3.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 56 ggcgatggagctggaggcggcgaggcggcgct 87 |||||||| ||||| | ||||||||||||||| Sbjct: 85030 ggcgatggtgctggtgacggcgaggcggcgct 84999
>dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0698A06 Length = 156514 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ggctgcggtcgctgcgccgc 125 |||||||||||||||||||| Sbjct: 53147 ggctgcggtcgctgcgccgc 53166
>dbj|AB033747.1| Deinococcus radiodurans uvsCDE gene for UV-endonuclease, complete cds Length = 918 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cgccgactactgcgcggcgc 219 |||||||||||||||||||| Sbjct: 174 cgccgactactgcgcggcgc 193
>dbj|AK070038.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035D03, full insert sequence Length = 1277 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ggctgcggtcgctgcgccgc 125 |||||||||||||||||||| Sbjct: 895 ggctgcggtcgctgcgccgc 914
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 ctcgccaagctggtggccggctac 188 |||||||||| ||||||||||||| Sbjct: 5175223 ctcgccaagccggtggccggctac 5175246
>gb|AF161183.1|AF161183 Burkholderia cepacia tryptophan halogenase (prnA), PrnB (prnB), PrnC (prnC), and PrnD (prnD) genes, complete cds Length = 8931 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 cgctgcgccgcgacctccgc 134 |||||||||||||||||||| Sbjct: 6372 cgctgcgccgcgacctccgc 6391
>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13, complete sequence Length = 130249 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tggaggcggcgaggcggcgc 86 |||||||||||||||||||| Sbjct: 127784 tggaggcggcgaggcggcgc 127765
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ggagctggaggcggcgaggc 81 |||||||||||||||||||| Sbjct: 1494556 ggagctggaggcggcgaggc 1494537
>emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chromosome X, complete sequence Length = 227918 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gccagaaaagggagacaacc 47 |||||||||||||||||||| Sbjct: 82724 gccagaaaagggagacaacc 82705 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,616,051 Number of Sequences: 3902068 Number of extensions: 1616051 Number of successful extensions: 49142 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47684 Number of HSP's gapped (non-prelim): 1458 length of query: 245 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 223 effective length of database: 17,147,199,772 effective search space: 3823825549156 effective search space used: 3823825549156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
