ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62b10 |
|---|---|
| Clone Library Name | barley_pub |
>DRD2L_FUGRU (P53453) D(2)-like dopamine receptor| Length = 463 Score = 33.9 bits (76), Expect = 0.20 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = +1 Query: 259 SSRLQASRRSTPDSPPEEDQDKQPKPNPSKAAKSMQAAITA 381 S++ AS STP +PPEE Q + +P+K A+ A + A Sbjct: 324 STKANASPTSTPPTPPEEGQRTEKNGDPTKEAQGNPAPVVA 364
>FMNL_MOUSE (Q9JL26) Formin-like 1 protein (Formin-related protein)| Length = 1094 Score = 33.5 bits (75), Expect = 0.26 Identities = 20/62 (32%), Positives = 26/62 (41%) Frame = +1 Query: 256 QSSRLQASRRSTPDSPPEEDQDKQPKPNPSKAAKSMQAAITATVSANPHLKPLVSLLRPS 435 Q+ R+ ST +S PE P P P ++Q+ A SA P PL P Sbjct: 516 QAPRVSTDSPSTAESIPEAASPPPPPPPPPPPLPNLQSQQEAPPSAPPLAPPLPGCAEPP 575 Query: 436 PA 441 PA Sbjct: 576 PA 577
>PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precursor (PELP)| Length = 426 Score = 27.3 bits (59), Expect(2) = 0.40 Identities = 19/63 (30%), Positives = 22/63 (34%) Frame = +1 Query: 253 CQSSRLQASRRSTPDSPPEEDQDKQPKPNPSKAAKSMQAAITATVSANPHLKPLVSLLRP 432 C+ S S + P PP + P P P KA A P P V P Sbjct: 156 CKPSPPDQSAKQPPQPPPAKQPSPPPPPPPVKAPSPSPA------KQPPPPPPPVKAPSP 209 Query: 433 SPA 441 SPA Sbjct: 210 SPA 212 Score = 24.3 bits (51), Expect(2) = 0.40 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = +2 Query: 167 PRPELLSPAARHPPPPGS 220 P+P SP + PPPP S Sbjct: 137 PKPSSPSPLVKPPPPPPS 154
>CF23_DROME (Q01522) Chorion transcription factor Cf2, isoform III| Length = 514 Score = 32.7 bits (73), Expect = 0.44 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +2 Query: 167 PRPELLSPAARHPPPPGSSASSVLPA*PT 253 PRPE SPA PPP ++ S+ PA PT Sbjct: 14 PRPEDQSPAPPPPPPSSATTSTAAPATPT 42
>CF2_DROME (P20385) Chorion transcription factor Cf2, isoforms I/II| Length = 510 Score = 32.7 bits (73), Expect = 0.44 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +2 Query: 167 PRPELLSPAARHPPPPGSSASSVLPA*PT 253 PRPE SPA PPP ++ S+ PA PT Sbjct: 14 PRPEDQSPAPPPPPPSSATTSTAAPATPT 42
>TPO_CANFA (P42705) Thrombopoietin precursor (Megakaryocyte colony-stimulating| factor) (C-MPL ligand) (ML) (Megakaryocyte growth and development factor) (MGDF) Length = 352 Score = 26.6 bits (57), Expect(2) = 0.87 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +1 Query: 292 PDSPPEEDQDKQPKPNPSKAAKSMQAAITATVSANPHLKPL 414 P SP ++ + P P+PS A S + ++A+PH + L Sbjct: 311 PTSPTPQNPLQPPPPDPSATANSTSPLL---IAAHPHFQNL 348 Score = 23.9 bits (50), Expect(2) = 0.87 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +2 Query: 185 SPAARHPPPPGSSASSVLPA*PT 253 SP+ HPPP + S LP PT Sbjct: 293 SPSPIHPPPGQYTLFSPLPTSPT 315
>H1C1_XENLA (P15866) Histone H1C (Clone XLHW2)| Length = 216 Score = 31.6 bits (70), Expect = 0.97 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = +1 Query: 274 ASRRSTPDSPPEEDQDKQPKPNPSKAAKSMQAAITATVSANPHLKPLVS 420 AS +TP +PP E + K+ K P KAA +A + SA+ + VS Sbjct: 4 ASTETTPAAPPAEPKQKKKKQQPKKAAGGAKAKKPSGPSASELIVKSVS 52
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 30.8 bits (68), Expect = 1.7 Identities = 16/47 (34%), Positives = 20/47 (42%) Frame = +1 Query: 292 PDSPPEEDQDKQPKPNPSKAAKSMQAAITATVSANPHLKPLVSLLRP 432 P PP Q +QP P P + QAA S P + V +L P Sbjct: 764 PPPPPPPQQQQQPPPPPPPPSMPQQAAPAMKSSPPPFIATQVPVLEP 810
>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic| chromosome-associated protein) (MCAP) Length = 1400 Score = 30.4 bits (67), Expect = 2.2 Identities = 15/47 (31%), Positives = 20/47 (42%) Frame = +1 Query: 292 PDSPPEEDQDKQPKPNPSKAAKSMQAAITATVSANPHLKPLVSLLRP 432 P PP + Q +QP P P + Q A S P + V +L P Sbjct: 766 PPPPPPQQQQQQPPPPPPPPSMPQQTAPAMKSSPPPFITAQVPVLEP 812
>PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)| Length = 939 Score = 30.0 bits (66), Expect = 2.8 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = +1 Query: 235 AACVTYCQSSRLQASRRSTPDSPPEEDQDKQPKPNPSKAAKSMQAA 372 A+ S RL SRR P + QD QP+P+ ++A ++AA Sbjct: 59 ASAAPSAPSDRLLFSRRGQGADPGGKAQDAQPRPDVARADPRLEAA 104
>MYRIP_MOUSE (Q8K3I4) Rab effector MyRIP (Myosin-VIIa- and Rab-interacting| protein) (Exophilin-8) (Slp homolog lacking C2 domains c) Length = 856 Score = 29.6 bits (65), Expect = 3.7 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = +1 Query: 301 PPEEDQDKQPKPNPSKAAKSMQAAITATVSANP 399 PP + + KQP+P P++A S Q + AT +NP Sbjct: 414 PPSQSRLKQPQPQPTQAQSSGQGPL-ATSPSNP 445
>VIV_ORYSA (P37398) Protein viviparous homolog| Length = 728 Score = 29.6 bits (65), Expect = 3.7 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +1 Query: 268 LQASRRSTPDSPPEEDQDKQPKPNPSKAAKSMQAAITA 381 +Q + P+ PP KQPKP+P K QAA TA Sbjct: 476 IQNPLSNKPNPPPATS--KQPKPSPEKPKPKPQAAATA 511
>DNB2_ADE40 (P11806) Early E2A DNA-binding protein| Length = 473 Score = 29.6 bits (65), Expect = 3.7 Identities = 23/69 (33%), Positives = 36/69 (52%) Frame = +1 Query: 214 GIQCVVRAACVTYCQSSRLQASRRSTPDSPPEEDQDKQPKPNPSKAAKSMQAAITATVSA 393 G+Q V +A+ Y + RL+ + P PP E+ +++ +P+ SKA S V Sbjct: 71 GVQVVQKASGKRYVR--RLEP--KGVP--PPSEENNEEEEPSTSKAVTS--------VVL 116 Query: 394 NPHLKPLVS 420 NP +PLVS Sbjct: 117 NPQAEPLVS 125
>JPH2_HUMAN (Q9BR39) Junctophilin-2 (Junctophilin type 2) (JP-2)| Length = 696 Score = 25.4 bits (54), Expect(2) = 4.7 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = +1 Query: 244 VTYCQSSRLQASRRSTPDSPPEEDQDKQPKPNPSKAAKSMQAAITATVSA 393 V Q A R + P+ PP ED QP+P S + + + TA + A Sbjct: 560 VALYQGYHSYAVRTTPPEPPPFED---QPEPEVSGSESAPSSPATAPLQA 606 Score = 22.3 bits (46), Expect(2) = 4.7 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 5/31 (16%) Frame = +2 Query: 167 PRPE-----LLSPAARHPPPPGSSASSVLPA 244 PRP LLSP A + P G + SV P+ Sbjct: 497 PRPGVSKDGLLSPGAWNGEPSGEGSRSVTPS 527
>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3259 Score = 29.3 bits (64), Expect = 4.8 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Frame = +1 Query: 274 ASRRSTPDSP---PEEDQDKQPKPNPSKAAKSMQAAITATV---SANPHLKPLVSLLRPS 435 A+ R +P P P ++ +PKP P +AAK Q + + S P+ + + SL S Sbjct: 2202 ATSRDSPQPPAPQPVPEKIPEPKPEPVRAAKPAQPPLALQMPAQSLTPYAQIMQSLQLSS 2261 Query: 436 P 438 P Sbjct: 2262 P 2262
>ABL2_HUMAN (P42684) Tyrosine-protein kinase ABL2 (EC 2.7.10.2) (Abelson murine| leukemia viral oncogene homolog 2) (Tyrosine kinase ARG) Length = 1182 Score = 29.3 bits (64), Expect = 4.8 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +1 Query: 253 CQSSRLQASRRSTPDSPPEEDQDKQPKPNPSKAAKS 360 CQ S+LQ R + S PEE+ D+ P K+ +S Sbjct: 805 CQRSKLQLERTVSTSSQPEENVDRANDMLPKKSEES 840
>MPA5A_LOLPR (Q40240) Major pollen allergen Lol p 5a precursor (Lol p Va) (Lol p| Ib) Length = 308 Score = 29.3 bits (64), Expect = 4.8 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 5/42 (11%) Frame = +1 Query: 283 RSTPDSPPEEDQDKQPKPNPSKAAKSM-----QAAITATVSA 393 R T SPP + +P P PS AA + +AA+T ++A Sbjct: 218 RPTSSSPPSRPRSSRPTPPPSPAAPEVKYAVFEAALTKAITA 259
>ROR1_HUMAN (Q01973) Tyrosine-protein kinase transmembrane receptor ROR1| precursor (EC 2.7.10.1) (Neurotrophic tyrosine kinase, receptor-related 1) Length = 937 Score = 29.3 bits (64), Expect = 4.8 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = -2 Query: 343 SDSVLVVYLGPPPVASPAWSGE 278 S VL V GPPP ASP +S E Sbjct: 142 STGVLFVKFGPPPTASPGYSDE 163
>HXB1_CYPCA (Q90346) Homeobox protein Hox-B1| Length = 315 Score = 29.3 bits (64), Expect = 4.8 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = +1 Query: 247 TYCQSSRLQASRRSTPDSPPEEDQD-KQPKPNPSKAAK 357 TY SR Q R T SPP + D + K NP K AK Sbjct: 175 TYADLSRSQGRERDTDQSPPGKTFDWMKVKRNPPKTAK 212
>RYBP_MOUSE (Q8CCI5) RING1 and YY1-binding protein (Death effector| domain-associated factor) (DED-associated factor) Length = 228 Score = 29.3 bits (64), Expect = 4.8 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Frame = +1 Query: 274 ASRRSTPDSPPEEDQDKQPKPNPSKAAKSMQAAITAT-VSANPHLKPLVSLLRPSPA 441 A + +TP P +E ++K KP+ K K + + T + N KP +L+ P+ Sbjct: 67 AQQYATPPPPKKEKKEKVEKPDKEKPEKDKDISPSVTKKNTNKKTKPKSDILKDPPS 123
>RFX1_HUMAN (P22670) MHC class II regulatory factor RFX1 (RFX) (Enhancer factor| C) (EF-C) Length = 979 Score = 29.3 bits (64), Expect = 4.8 Identities = 14/49 (28%), Positives = 20/49 (40%) Frame = +1 Query: 292 PDSPPEEDQDKQPKPNPSKAAKSMQAAITATVSANPHLKPLVSLLRPSP 438 P PP+ QP+P P + Q T +A P + + L P P Sbjct: 15 PSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQSPQP 63
>HXD3_CHICK (O93353) Homeobox protein Hox-D3| Length = 413 Score = 29.3 bits (64), Expect = 4.8 Identities = 16/64 (25%), Positives = 27/64 (42%) Frame = +1 Query: 229 VRAACVTYCQSSRLQASRRSTPDSPPEEDQDKQPKPNPSKAAKSMQAAITATVSANPHLK 408 + +C+ S LQ + P +PP+ Q +P P +A Q A + AN Sbjct: 66 ISESCMRTLPSQPLQPPGLTDPQAPPQPPPAPQAQPPPPSSASPSQNASSNPAPANSTKS 125 Query: 409 PLVS 420 P ++ Sbjct: 126 PALN 129
>HXA3_CHICK (Q7T3J5) Homeobox protein Hox-A3| Length = 413 Score = 29.3 bits (64), Expect = 4.8 Identities = 16/64 (25%), Positives = 27/64 (42%) Frame = +1 Query: 229 VRAACVTYCQSSRLQASRRSTPDSPPEEDQDKQPKPNPSKAAKSMQAAITATVSANPHLK 408 + +C+ S LQ + P +PP+ Q +P P +A Q A + AN Sbjct: 66 ISESCMRTLPSQPLQPPGLTDPQAPPQPPPAPQAQPPPPSSASPSQNASSNPAPANSTKS 125 Query: 409 PLVS 420 P ++ Sbjct: 126 PALN 129
>FIP1_RAT (Q5U317) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)| Length = 536 Score = 28.9 bits (63), Expect = 6.3 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +2 Query: 161 ISPRPELLSPAARHPPPPGSSASSVLPA*PTANLQGY 271 +S P L+ P PPPPG+ S++P + + GY Sbjct: 321 VSTAPPLIPPPG-FPPPPGAPPPSLIPTIESGHSSGY 356
>NENF_MOUSE (Q9CQ45) Neudesin precursor (Neuron-derived neurotrophic factor)| (Secreted protein of unknown function) (SPUF protein) Length = 171 Score = 28.9 bits (63), Expect = 6.3 Identities = 16/34 (47%), Positives = 21/34 (61%) Frame = -2 Query: 373 SRPALTWRLYSDSVLVVYLGPPPVASPAWSGERP 272 +RPA WRL + LV+ L PV S AW+G+ P Sbjct: 2 ARPAPWWRLRLLAALVLALALVPVPS-AWAGQTP 34
>TISD_MOUSE (P23949) Butyrate response factor 2 (TIS11D protein)| Length = 367 Score = 28.9 bits (63), Expect = 6.3 Identities = 12/16 (75%), Positives = 13/16 (81%) Frame = +2 Query: 185 SPAARHPPPPGSSASS 232 SP +R PPPP SSASS Sbjct: 257 SPTSRTPPPPSSSASS 272
>HD2C_ARATH (Q9LZR5) Histone deacetylase 2c (HD-tuins protein 3)| Length = 294 Score = 28.9 bits (63), Expect = 6.3 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = +1 Query: 274 ASRRSTPDSPPEEDQDKQPKPNPSKAAKSMQAAITATVSANPHLKPLVSLLRPSPA 441 +S TP P EE + + +PN SK S + A T KP V + P P+ Sbjct: 185 SSEEETPKKP-EEPKKRSAEPNSSKNPASNKKAKFVTPQKTDSKKPHVHVATPHPS 239
>FIP1_HUMAN (Q6UN15) Pre-mRNA 3'-end-processing factor FIP1 (FIP1-like 1)| (Factor interacting with PAP) (hFip1) (Rearranged in hypereosinophilia) Length = 594 Score = 28.9 bits (63), Expect = 6.3 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +2 Query: 161 ISPRPELLSPAARHPPPPGSSASSVLPA*PTANLQGY 271 +S P L+ P PPPPG+ S++P + + GY Sbjct: 381 VSTAPPLIPPPG-FPPPPGAPPPSLIPTIESGHSSGY 416
>SF3A1_ARATH (Q8RXF1) Probable splicing factor 3 subunit 1| Length = 785 Score = 24.6 bits (52), Expect(2) = 7.7 Identities = 9/17 (52%), Positives = 10/17 (58%) Frame = +2 Query: 170 RPELLSPAARHPPPPGS 220 RP + P PPPPGS Sbjct: 613 RPPQMQPGMHVPPPPGS 629 Score = 22.3 bits (46), Expect(2) = 7.7 Identities = 10/23 (43%), Positives = 11/23 (47%) Frame = +2 Query: 203 PPPPGSSASSVLPA*PTANLQGY 271 PPPP A LP P A Q + Sbjct: 662 PPPPPEEAPPPLPEEPEAKRQKF 684
>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4| (Trithorax homolog 2) Length = 2715 Score = 28.5 bits (62), Expect = 8.2 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 3/55 (5%) Frame = +1 Query: 283 RSTPDSPPEEDQDKQPKPNPSKAAKSMQAAITATVSANP---HLKPLVSLLRPSP 438 R P PP P P P+ A S + + P HLK S+L P P Sbjct: 616 RELPPPPPAPPPPPAPSPPPAPATSSRRPLLLRAPQFTPSEAHLKIYESVLTPPP 670
>H1A_XENLA (P06892) Histone H1A| Length = 209 Score = 28.5 bits (62), Expect = 8.2 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +1 Query: 286 STPDSPPEEDQDKQPKPNPSKAAKSMQAAITATVSANP 399 S P PP E K+ K P KAA + AA + S+ P Sbjct: 6 SAPAPPPAEPAAKKKKQQPKKAAAARGAAKSKKPSSGP 43 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.127 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,762,008 Number of Sequences: 219361 Number of extensions: 651349 Number of successful extensions: 3920 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3230 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3860 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
