ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62b10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC102739.7| Mus musculus chromosome 5, clone RP24-309H3, complete sequence Length = 191542 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 401 atctgaagcctctggtctcct 421 ||||||||||||||||||||| Sbjct: 168089 atctgaagcctctggtctcct 168069
>gb|AC111029.8| Mus musculus chromosome 3, clone RP23-235E15, complete sequence Length = 196520 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 188 cccgccgctcgtcatccgccgccgccggg 216 ||||||||||||| |||||||||||||| Sbjct: 80239 cccgccgctcgtctcccgccgccgccggg 80267
>gb|AC124576.4| Mus musculus BAC clone RP23-162H6 from chromosome 16, complete sequence Length = 233527 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 tctgaagcctctggtctcctt 422 ||||||||||||||||||||| Sbjct: 222026 tctgaagcctctggtctcctt 222006
>gb|AC127246.3| Mus musculus BAC clone RP24-424L20 from chromosome 16, complete sequence Length = 181475 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 tctgaagcctctggtctcctt 422 ||||||||||||||||||||| Sbjct: 80605 tctgaagcctctggtctcctt 80625
>gb|AC163723.3| Mus musculus BAC clone RP23-450O11 from chromosome 16, complete sequence Length = 181338 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 tctgaagcctctggtctcctt 422 ||||||||||||||||||||| Sbjct: 128803 tctgaagcctctggtctcctt 128823
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 cccatcttgtaggcgccgccg 87 ||||||||||||||||||||| Sbjct: 184063 cccatcttgtaggcgccgccg 184043
>dbj|AK162210.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420457K17 product:polypyrimidine tract binding protein 2, full insert sequence Length = 1167 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 188 cccgccgctcgtcatccgccgccgccggg 216 ||||||||||||| |||||||||||||| Sbjct: 408 cccgccgctcgtctcccgccgccgccggg 436
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 80 cgccgccgacgccgaccgccg 100 ||||||||||||||||||||| Sbjct: 5101526 cgccgccgacgccgaccgccg 5101506
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 ccgccgcggcgacgcccgccg 158 ||||||||||||||||||||| Sbjct: 3478180 ccgccgcggcgacgcccgccg 3478200
>gb|AC142256.4| Mus musculus BAC clone RP24-528N23 from 3, complete sequence Length = 183488 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 188 cccgccgctcgtcatccgccgccgccggg 216 ||||||||||||| |||||||||||||| Sbjct: 105327 cccgccgctcgtctcccgccgccgccggg 105355
>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0048I21, complete sequence Length = 137650 Score = 40.1 bits (20), Expect = 6.1 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 74 tgtaggcgccgccgacgccgaccgccgtctcgcgcc 109 |||||||||||||| ||||| |||||||| |||||| Sbjct: 61497 tgtaggcgccgccgccgccg-ccgccgtcgcgcgcc 61531
>ref|XM_483086.1| Oryza sativa (japonica cultivar-group), mRNA Length = 831 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ctcgtcatccgccgccgccg 214 |||||||||||||||||||| Sbjct: 366 ctcgtcatccgccgccgccg 385
>ref|NM_197632.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0082M15.6), mRNA Length = 1024 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 cgccgcggcgacgcccgccg 158 |||||||||||||||||||| Sbjct: 426 cgccgcggcgacgcccgccg 407
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 accgccgtctcgcgccgcccaccg 117 ||||||| |||||||||||||||| Sbjct: 2130467 accgccgcctcgcgccgcccaccg 2130490
>gb|AC166982.4| Mus musculus chromosome 18, clone RP24-377P23, complete sequence Length = 154269 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 atctgaagcctctggtctcc 420 |||||||||||||||||||| Sbjct: 60384 atctgaagcctctggtctcc 60365
>gb|AC116571.5| Mus musculus BAC clone RP23-97B18 from 6, complete sequence Length = 113258 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 188 cccgccgctcgtcatccgccgccgccgg 215 ||||||||||| | |||||||||||||| Sbjct: 36547 cccgccgctcgccctccgccgccgccgg 36574
>gb|AC121524.6| Mus musculus chromosome 18, clone RP24-342F19, complete sequence Length = 148255 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 atctgaagcctctggtctcc 420 |||||||||||||||||||| Sbjct: 105806 atctgaagcctctggtctcc 105825
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 aggcgccgccgacgccgacc 96 |||||||||||||||||||| Sbjct: 679812 aggcgccgccgacgccgacc 679793
>gb|AE011687.1| Xanthomonas axonopodis pv. citri str. 306, section 65 of 469 of the complete genome Length = 10029 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gccgcaaccgccgcggcgac 150 |||||||||||||||||||| Sbjct: 1321 gccgcaaccgccgcggcgac 1340
>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183327 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 cgccgctcgtcatccgccgccgcc 213 ||||||||| |||||||||||||| Sbjct: 179134 cgccgctcgccatccgccgccgcc 179111
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete sequence Length = 158550 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 cgccgcggcgacgcccgccg 158 |||||||||||||||||||| Sbjct: 138638 cgccgcggcgacgcccgccg 138619
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 362 tgcaggccgcgatcaccgccaccgtctc 389 ||||||||| ||||||||||| |||||| Sbjct: 1607508 tgcaggccgagatcaccgccatcgtctc 1607481
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 cgccgccgacgccgaccgcc 99 |||||||||||||||||||| Sbjct: 4017671 cgccgccgacgccgaccgcc 4017652
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 cgccgcggcgacgcccgccg 158 |||||||||||||||||||| Sbjct: 20925753 cgccgcggcgacgcccgccg 20925772
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ctcgtcatccgccgccgccg 214 |||||||||||||||||||| Sbjct: 24225957 ctcgtcatccgccgccgccg 24225976
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 cgccgccgccgggatccagt 223 |||||||||||||||||||| Sbjct: 28731710 cgccgccgccgggatccagt 28731729
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 182 ctctctcccgccgctcgtcatccgccgccgcc 213 ||||||||| |||||| || |||||||||||| Sbjct: 29799440 ctctctccctccgctcctcctccgccgccgcc 29799471
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.1 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 74 tgtaggcgccgccgacgccgaccgccgtctcgcgcc 109 |||||||||||||| ||||| |||||||| |||||| Sbjct: 20934719 tgtaggcgccgccgccgccg-ccgccgtcgcgcgcc 20934753
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 cgccgctcgtcatccgccgccgcc 213 ||||||||| |||||||||||||| Sbjct: 24800445 cgccgctcgccatccgccgccgcc 24800422
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 gctcgtcatccgccgccgcc 213 |||||||||||||||||||| Sbjct: 4345926 gctcgtcatccgccgccgcc 4345907
>gb|AC138117.4| Mus musculus BAC clone RP24-146K16 from chromosome 6, complete sequence Length = 230020 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 188 cccgccgctcgtcatccgccgccgccgg 215 ||||||||||| | |||||||||||||| Sbjct: 124781 cccgccgctcgccctccgccgccgccgg 124808
>gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin biosynthetic gene cluster, complete sequence Length = 123580 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 ggccgcgatcaccgccaccg 385 |||||||||||||||||||| Sbjct: 31093 ggccgcgatcaccgccaccg 31112
>dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1205_F02 Length = 112862 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 cgccgccgccgggatccagt 223 |||||||||||||||||||| Sbjct: 39271 cgccgccgccgggatccagt 39290
>dbj|AP004678.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1136_F03 Length = 110783 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 182 ctctctcccgccgctcgtcatccgccgccgcc 213 ||||||||| |||||| || |||||||||||| Sbjct: 97570 ctctctccctccgctcctcctccgccgccgcc 97601
>dbj|AP004620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0605H02 Length = 175547 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ctcgtcatccgccgccgccg 214 |||||||||||||||||||| Sbjct: 92296 ctcgtcatccgccgccgccg 92315
>gb|AE004991.1| Halobacterium sp. NRC-1 section 22 of 170 of the complete genome Length = 10586 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 cgccgccgacgccgaccgcc 99 |||||||||||||||||||| Sbjct: 8189 cgccgccgacgccgaccgcc 8208
>emb|X55157.1|PTFCP3 P.tricornutum fcp3 mRNA for fucoxanthin, chlorophyll protein 3 Length = 676 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tcccctcggcctcgtcgccg 31 |||||||||||||||||||| Sbjct: 157 tcccctcggcctcgtcgccg 176
>emb|Z23153.1|PTFCPEFA P.tricornutum fcpE and fcpF genes, complete CDS's Length = 2390 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tcccctcggcctcgtcgccg 31 |||||||||||||||||||| Sbjct: 533 tcccctcggcctcgtcgccg 552
>dbj|AK107224.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-D06, full insert sequence Length = 1141 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 cgccgcggcgacgcccgccg 158 |||||||||||||||||||| Sbjct: 559 cgccgcggcgacgcccgccg 540
>dbj|AK107043.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-C06, full insert sequence Length = 903 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 182 ctctctcccgccgctcgtcatccgccgccgcc 213 ||||||||| |||||| || |||||||||||| Sbjct: 332 ctctctccctccgctcctcctccgccgccgcc 301
>emb|AJ328867.1|HSA328867 Homo sapiens genomic sequence surrounding NotI site, clone NR1-NF18R Length = 816 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 gccgtcgcctgcgcaccggg 448 |||||||||||||||||||| Sbjct: 126 gccgtcgcctgcgcaccggg 145
>dbj|AK066891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089B12, full insert sequence Length = 1102 Score = 40.1 bits (20), Expect = 6.1 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 74 tgtaggcgccgccgacgccgaccgccgtctcgcgcc 109 |||||||||||||| ||||| |||||||| |||||| Sbjct: 578 tgtaggcgccgccgccgccg-ccgccgtcgcgcgcc 544
>dbj|AK058688.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-A12, full insert sequence Length = 881 Score = 40.1 bits (20), Expect = 6.1 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 74 tgtaggcgccgccgacgccgaccgccgtctcgcgcc 109 |||||||||||||| ||||| |||||||| |||||| Sbjct: 351 tgtaggcgccgccgccgccg-ccgccgtcgcgcgcc 317
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 68 ccatcttgtaggcgccgccgacgc 91 |||||||||| ||||||||||||| Sbjct: 1522455 ccatcttgtaagcgccgccgacgc 1522432
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 cgccgcggcgacgcccgccg 158 |||||||||||||||||||| Sbjct: 20937017 cgccgcggcgacgcccgccg 20937036 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,422,333 Number of Sequences: 3902068 Number of extensions: 3422333 Number of successful extensions: 78907 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 76849 Number of HSP's gapped (non-prelim): 2076 length of query: 452 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 430 effective length of database: 17,147,199,772 effective search space: 7373295901960 effective search space used: 7373295901960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
