ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast62b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DHN3_HORVU (P12948) Dehydrin DHN3 (B17) 66 4e-11
2DHR21_ORYSA (P12253) Water stress-inducible protein Rab21 44 2e-04
3DH16C_ORYSA (P22912) Dehydrin Rab16C 39 0.005
4DH16B_ORYSA (P22911) Dehydrin Rab16B 39 0.007
5DHN1_HORVU (P12951) Dehydrin DHN1 (B8) 36 0.045
6DHN4_HORVU (P12949) Dehydrin DHN4 (B18) 35 0.10
7DHN2_HORVU (P12952) Dehydrin DHN2 (B9) 34 0.17
8DHN1_MAIZE (P12950) Dehydrin DHN1 (M3) (RAB-17 protein) 34 0.22
9DH16D_ORYSA (P22913) Dehydrin Rab16D 31 1.9
10CUP52_GALME (Q24998) Pupal cuticle protein PCP52 precursor (GMPC... 30 4.2

>DHN3_HORVU (P12948) Dehydrin DHN3 (B17)|
          Length = 161

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 32/57 (56%), Positives = 32/57 (56%)
 Frame = +2

Query: 86  MEHGHATNRVDEYGNPXXXXXXXXXXXXXXXXXXXXXXXXXFQPTREEHKAGGILQR 256
           MEHGHATNRVDEYGNP                         FQPTREEHKAGGILQR
Sbjct: 1   MEHGHATNRVDEYGNPVAGHGVGTGMGAHGGVGTGAAAGGHFQPTREEHKAGGILQR 57



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>DHR21_ORYSA (P12253) Water stress-inducible protein Rab21|
          Length = 172

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 20/76 (26%)
 Frame = +2

Query: 89  EHGHATNRVDEYGNPXXXXX--------------------XXXXXXXXXXXXXXXXXXXX 208
           +HGH T+RVDEYGNP                                             
Sbjct: 6   QHGHVTSRVDEYGNPVGTGAGHGQMGTAGMGTHGTTGGMGTHGTTGGMGTHGTTGTGGGQ 65

Query: 209 FQPTREEHKAGGILQR 256
           FQP REEHK GG+LQR
Sbjct: 66  FQPMREEHKTGGVLQR 81



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>DH16C_ORYSA (P22912) Dehydrin Rab16C|
          Length = 164

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
 Frame = +2

Query: 89  EHGHATNRVDEYGNPXXXXXXXXXXX------XXXXXXXXXXXXXXFQPTREEHKAGGIL 250
           +HG+  +RVD YGNP                               FQP +EEHK GGIL
Sbjct: 7   QHGYGADRVDVYGNPVAGQYGGGATAPGGGHGVMGMGGHHAGAGGQFQPVKEEHKTGGIL 66

Query: 251 QR 256
            R
Sbjct: 67  HR 68



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>DH16B_ORYSA (P22911) Dehydrin Rab16B|
          Length = 164

 Score = 38.9 bits (89), Expect = 0.007
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
 Frame = +2

Query: 89  EHGHATNRVDEYGNPXXXXXXXXXXXX--------XXXXXXXXXXXXXFQPTREEHKAGG 244
           +HG+  +RVD YGNP                                 FQP RE+HK GG
Sbjct: 7   QHGYGADRVDVYGNPVGAGQYGGGATAPGGGHGAMGMGGHAGAGAGGQFQPAREDHKTGG 66

Query: 245 ILQR 256
           IL R
Sbjct: 67  ILHR 70



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>DHN1_HORVU (P12951) Dehydrin DHN1 (B8)|
          Length = 139

 Score = 36.2 bits (82), Expect = 0.045
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 89  EHGHATNRVDEYGNPXXXXXXXXXXXXXXXXXXXXXXXXXFQPTREEHKAGGILQR 256
           +HGHAT++V+EYG P                          Q TR+ HK  G+L+R
Sbjct: 6   QHGHATDKVEEYGQP-VAGHGGFTGGPTGTHGAAGVGGAQLQATRDGHKTDGVLRR 60



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>DHN4_HORVU (P12949) Dehydrin DHN4 (B18)|
          Length = 225

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +2

Query: 95  GHATNRVDEYGNPXXXXXXXXXXXXXXXXXXXXXXXXXFQPTREEHKAG-GILQR 256
           G    RVDEYGNP                         +QP R+EH+ G GIL R
Sbjct: 5   GQQHGRVDEYGNPVAGHGVGTGMGTHGGVGTGAAAGGHYQPMRDEHQTGRGILHR 59



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>DHN2_HORVU (P12952) Dehydrin DHN2 (B9)|
          Length = 143

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +2

Query: 95  GHAT-NRVDEYGNPXXXXXXXXXX-XXXXXXXXXXXXXXXFQPTREEHKAGGILQR 256
           GHAT ++V+EYG P                           QPTR++HK  G+L+R
Sbjct: 8   GHATTDKVEEYGQPVAGHGGATGGPTGTHGAAAAAAGTGQLQPTRDDHKTDGVLRR 63



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>DHN1_MAIZE (P12950) Dehydrin DHN1 (M3) (RAB-17 protein)|
          Length = 168

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 22/68 (32%), Positives = 24/68 (35%), Gaps = 12/68 (17%)
 Frame = +2

Query: 89  EHGHA-TNRVDEYGNPXXXXXXXXXXXXXXXXXX-----------XXXXXXXFQPTREEH 232
           + GH  T  VD+YGNP                                    FQP REEH
Sbjct: 8   QRGHGRTGHVDQYGNPVGGVEHGTGGMRHGTGTTGGMGQLGEHGGAGMGGGQFQPAREEH 67

Query: 233 KAGGILQR 256
           K GGIL R
Sbjct: 68  KTGGILHR 75



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>DH16D_ORYSA (P22913) Dehydrin Rab16D|
          Length = 151

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +2

Query: 95  GHATNRVDEYGNPXXXXXXXXXXXXXXXXXXXXXXXXXFQPTREEHKAGGILQR 256
           GHA++R DE+GNP                          +P RE+ K  G+L+R
Sbjct: 9   GHASSRADEHGNPAVTTGNAPTGMGAGHIQ---------EPAREDKKTDGVLRR 53



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>CUP52_GALME (Q24998) Pupal cuticle protein PCP52 precursor (GMPCP52)|
          Length = 353

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +3

Query: 246 SCSAPAAQAPAR-LRMXXXXXXXXXXXXXXXXXXXPVATVISSRPVAPMGSTDTP 407
           S  A AA APA  L                     PVAT +S+ P+AP+ S+  P
Sbjct: 232 SSEASAAAAPAASLSEASAQSASETGVSAASLSQSPVATPLSAAPLAPLPSSSVP 286


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,861,922
Number of Sequences: 219361
Number of extensions: 452180
Number of successful extensions: 1354
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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