ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62b01 |
|---|---|
| Clone Library Name | barley_pub |
>UPS1_ARATH (Q9ZPR7) Ureide permease 1 (AtUPS1)| Length = 390 Score = 141 bits (356), Expect = 3e-34 Identities = 67/93 (72%), Positives = 78/93 (83%) Frame = +1 Query: 4 ALAGGVVITLGTVATQYGWAYVGLSVTEVMASSLKVVIGTTLNYFLDGRINRAEVLFPGV 183 A+AGG+V++LG +ATQY WAYVGLSVTEV+ +S+ VVIGTTLNYFLD RINRAEVLFPGV Sbjct: 85 AMAGGIVLSLGNLATQYAWAYVGLSVTEVITASITVVIGTTLNYFLDDRINRAEVLFPGV 144 Query: 184 GCFLIAACLGSLVHSSNAADNQEKLSNSRNYST 282 CFLIA C GS VH SNAADN+ KL N ++ T Sbjct: 145 ACFLIAVCFGSAVHKSNAADNKTKLQNFKSLET 177
>UPS3_ARATH (Q9ZPR6) Ureide permease 3 (AtUPS3)| Length = 344 Score = 138 bits (347), Expect = 4e-33 Identities = 65/93 (69%), Positives = 77/93 (82%) Frame = +1 Query: 4 ALAGGVVITLGTVATQYGWAYVGLSVTEVMASSLKVVIGTTLNYFLDGRINRAEVLFPGV 183 A+AGG+ ++LGT+ATQY WA+VGLSVTEV+ +S+ VVIGTTLNYFLD RINRAEVLFPGV Sbjct: 85 AMAGGIFLSLGTLATQYAWAFVGLSVTEVITASIAVVIGTTLNYFLDDRINRAEVLFPGV 144 Query: 184 GCFLIAACLGSLVHSSNAADNQEKLSNSRNYST 282 CFLIA C GS VH SNAADN+ KL ++ T Sbjct: 145 ACFLIAVCFGSAVHKSNAADNKSKLQGFKSLET 177
>UPS2_ARATH (Q9ZQ89) Ureide permease 2 (AtUPS2)| Length = 398 Score = 129 bits (323), Expect = 2e-30 Identities = 60/85 (70%), Positives = 73/85 (85%) Frame = +1 Query: 4 ALAGGVVITLGTVATQYGWAYVGLSVTEVMASSLKVVIGTTLNYFLDGRINRAEVLFPGV 183 A+AGG+V++LG ++TQY WA VGLSVTEV+ SS+ VVIG+TLNYFLD +IN+AE+LFPGV Sbjct: 88 AMAGGIVLSLGNLSTQYAWALVGLSVTEVITSSITVVIGSTLNYFLDDKINKAEILFPGV 147 Query: 184 GCFLIAACLGSLVHSSNAADNQEKL 258 CFLIA CLGS VH SNA DN+ KL Sbjct: 148 ACFLIAVCLGSAVHRSNADDNKAKL 172
>UPS4_ARATH (Q9ZQ88) Ureide permease 4 (AtUPS4)| Length = 401 Score = 126 bits (317), Expect = 1e-29 Identities = 59/88 (67%), Positives = 78/88 (88%) Frame = +1 Query: 1 IALAGGVVITLGTVATQYGWAYVGLSVTEVMASSLKVVIGTTLNYFLDGRINRAEVLFPG 180 +A+AGGV++++G +ATQY +A+VGLSVTEV+ +S+ VVIGTTLNYFLD +IN+AE+LFPG Sbjct: 87 LAVAGGVLLSIGNLATQYAFAFVGLSVTEVITASITVVIGTTLNYFLDNKINKAEILFPG 146 Query: 181 VGCFLIAACLGSLVHSSNAADNQEKLSN 264 VGCFLIA LG+ VH+SNAAD +EKL + Sbjct: 147 VGCFLIAVFLGAAVHASNAADVKEKLKS 174
>UPS5_ARATH (Q93Z75) Ureide permease 5 (AtUPS5)| Length = 413 Score = 119 bits (297), Expect = 2e-27 Identities = 55/85 (64%), Positives = 72/85 (84%) Frame = +1 Query: 4 ALAGGVVITLGTVATQYGWAYVGLSVTEVMASSLKVVIGTTLNYFLDGRINRAEVLFPGV 183 A+AGGV +++G +ATQY A+VGLSVTEV A+S+ VV+GTT+NYFLD +NRA++LF GV Sbjct: 98 AMAGGVGLSIGNLATQYSLAFVGLSVTEVTAASITVVVGTTVNYFLDNGLNRADILFSGV 157 Query: 184 GCFLIAACLGSLVHSSNAADNQEKL 258 GCF++A CLGS VHSSN+AD + KL Sbjct: 158 GCFMVAVCLGSAVHSSNSADIKAKL 182
>UPSA3_VIGUN (Q41706) Probable ureide permease A3 (VuA3) (Fragment)| Length = 376 Score = 117 bits (294), Expect = 5e-27 Identities = 58/88 (65%), Positives = 75/88 (85%), Gaps = 1/88 (1%) Frame = +1 Query: 4 ALAGGVVITLGTVATQYGWAYVGLSVTEVMASSLKVVIGTTLNYFLDGRINRAEVLFPGV 183 A+ GGVV++LG +++QY +A+VGLSVTEV+ +S+ VVIGTTLNYFLD +IN+AE+LFPGV Sbjct: 87 AMGGGVVLSLGNLSSQYAFAFVGLSVTEVITASITVVIGTTLNYFLDDKINKAEILFPGV 146 Query: 184 GCFLIAACLG-SLVHSSNAADNQEKLSN 264 GCFLIA LG +SSNA+DN+ KLSN Sbjct: 147 GCFLIAVFLGFCRFNSSNASDNKAKLSN 174
>WECC_SALTI (Q8Z389) UDP-N-acetyl-D-mannosamine dehydrogenase (EC 1.1.1.-)| (UDP-ManNAc dehydrogenase) Length = 420 Score = 31.2 bits (69), Expect = 0.63 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Frame = +1 Query: 37 TVATQYGWAYVGLSVTEVMASSLKVVIGTTLNYFLDGRINRAE--VLFPGVGCFLIAACL 210 T + G Y+GL AS K VIG +N INR E ++ P +G + A Sbjct: 4 TTISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPALGNVVKMAVE 63 Query: 211 GSLVHSS 231 G + ++ Sbjct: 64 GGFLRAT 70
>Y2243_STRP8 (Q8NYZ3) Putative sugar uptake protein spyM18_2243| Length = 287 Score = 30.8 bits (68), Expect = 0.82 Identities = 19/93 (20%), Positives = 41/93 (44%) Frame = +1 Query: 7 LAGGVVITLGTVATQYGWAYVGLSVTEVMASSLKVVIGTTLNYFLDGRINRAEVLFPGVG 186 + GG + ++G + Y+G+SV ++S ++V+G+ + + R VG Sbjct: 63 ILGGFIWSIGQTGQFHAMQYMGVSVANPLSSGSQLVLGSLIGVLVFHEWTRPMQFV--VG 120 Query: 187 CFLIAACLGSLVHSSNAADNQEKLSNSRNYSTG 285 + + SS D ++++ N+S G Sbjct: 121 SLALLLLIVGFYFSSKQDDANAQVNHLHNFSKG 153
>Y2205_STRP1 (P0C0G9) Putative sugar uptake protein SPy2205/M5005_Spy1856| Length = 287 Score = 30.8 bits (68), Expect = 0.82 Identities = 19/93 (20%), Positives = 41/93 (44%) Frame = +1 Query: 7 LAGGVVITLGTVATQYGWAYVGLSVTEVMASSLKVVIGTTLNYFLDGRINRAEVLFPGVG 186 + GG + ++G + Y+G+SV ++S ++V+G+ + + R VG Sbjct: 63 ILGGFIWSIGQTGQFHAMQYMGVSVANPLSSGSQLVLGSLIGVLVFHEWTRPMQFV--VG 120 Query: 187 CFLIAACLGSLVHSSNAADNQEKLSNSRNYSTG 285 + + SS D ++++ N+S G Sbjct: 121 SLALLLLIVGFYFSSKQDDANAQVNHLHNFSKG 153
>Y1856_STRP3 (P60948) Putative sugar uptake protein SpyM3_1856/SPs1852| Length = 287 Score = 30.8 bits (68), Expect = 0.82 Identities = 19/93 (20%), Positives = 41/93 (44%) Frame = +1 Query: 7 LAGGVVITLGTVATQYGWAYVGLSVTEVMASSLKVVIGTTLNYFLDGRINRAEVLFPGVG 186 + GG + ++G + Y+G+SV ++S ++V+G+ + + R VG Sbjct: 63 ILGGFIWSIGQTGQFHAMQYMGVSVANPLSSGSQLVLGSLIGVLVFHEWTRPMQFV--VG 120 Query: 187 CFLIAACLGSLVHSSNAADNQEKLSNSRNYSTG 285 + + SS D ++++ N+S G Sbjct: 121 SLALLLLIVGFYFSSKQDDANAQVNHLHNFSKG 153
>RRP44_HUMAN (Q9Y2L1) Exosome complex exonuclease RRP44 (EC 3.1.13.-) (Ribosomal| RNA-processing protein 44) (DIS3 protein homolog) Length = 958 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Frame = -2 Query: 206 HAAIRKHPTPGKRTSALLIRPSR-K*FSVVPMTTLRLEAMTSVTESPTYAQPYCVATVPR 30 HA +RKHP P +L++ +R + + T L ESPT+ PY + T+ R Sbjct: 685 HALLRKHPAPPPSNYEILVKAARSRNLEIKTDTAKSLAESLDQAESPTF--PY-LNTLLR 741 Query: 29 VITT 18 ++ T Sbjct: 742 ILAT 745
>Y1874_STRP6 (Q5X9A4) Putative sugar uptake protein M6_Spy1874| Length = 287 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/93 (20%), Positives = 41/93 (44%) Frame = +1 Query: 7 LAGGVVITLGTVATQYGWAYVGLSVTEVMASSLKVVIGTTLNYFLDGRINRAEVLFPGVG 186 + GG + ++G + Y+G+SV ++S ++V+G+ + + R VG Sbjct: 63 ILGGFIWSIGQTGQFHAMQYMGVSVANPLSSGSQLVLGSLIGVLVFHEWTRPMQFV--VG 120 Query: 187 CFLIAACLGSLVHSSNAADNQEKLSNSRNYSTG 285 + + SS D ++++ N+S G Sbjct: 121 SLALLLLIIGFYFSSKQDDANAQVNHLHNFSKG 153
>WECC_SALTY (Q9L6R4) UDP-N-acetyl-D-mannosamine dehydrogenase (EC 1.1.1.-)| (UDP-ManNAc dehydrogenase) Length = 420 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Frame = +1 Query: 37 TVATQYGWAYVGLSVTEVMASSLKVVIGTTLNYFLDGRINRAE--VLFPGVGCFLIAACL 210 T + G Y+GL AS K VIG +N INR E ++ P +G + A Sbjct: 4 TTISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDIINRGEIHIVEPALGNVVKMAVE 63 Query: 211 GSLVHSS 231 G + ++ Sbjct: 64 GGFLRAT 70
>YXFA_LACLA (Q9CDF7) Putative sugar uptake protein yxfA| Length = 295 Score = 30.0 bits (66), Expect = 1.4 Identities = 23/98 (23%), Positives = 42/98 (42%) Frame = +1 Query: 1 IALAGGVVITLGTVATQYGWAYVGLSVTEVMASSLKVVIGTTLNYFLDGRINRAEVLFPG 180 I GG++ +G Y+G+SV ++S ++VIG + F + ++ F Sbjct: 61 IGFIGGLLWAIGQFGQFNSMKYMGVSVASPLSSGSQLVIGGLIGVFAFHEWTK-QIQFI- 118 Query: 181 VGCFLIAACLGSLVHSSNAADNQEKLSNSRNYSTGNTA 294 +G +A + S+ + RNY+ G TA Sbjct: 119 LGFIAMAVLVVGFYFSAKRDPENAVVEEGRNYTKGLTA 156
>WECC_SHIFL (P67067) UDP-N-acetyl-D-mannosamine dehydrogenase (EC 1.1.1.-)| (UDP-ManNAc dehydrogenase) Length = 420 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/38 (39%), Positives = 18/38 (47%) Frame = +1 Query: 55 GWAYVGLSVTEVMASSLKVVIGTTLNYFLDGRINRAEV 168 G Y+GL AS K VIG +N INR E+ Sbjct: 10 GLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEI 47
>WECC_ECOLI (P27829) UDP-N-acetyl-D-mannosamine dehydrogenase (EC 1.1.1.-)| (UDP-ManNAc dehydrogenase) Length = 420 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/38 (39%), Positives = 18/38 (47%) Frame = +1 Query: 55 GWAYVGLSVTEVMASSLKVVIGTTLNYFLDGRINRAEV 168 G Y+GL AS K VIG +N INR E+ Sbjct: 10 GLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEI 47
>WECC_ECO57 (P67066) UDP-N-acetyl-D-mannosamine dehydrogenase (EC 1.1.1.-)| (UDP-ManNAc dehydrogenase) Length = 420 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/38 (39%), Positives = 18/38 (47%) Frame = +1 Query: 55 GWAYVGLSVTEVMASSLKVVIGTTLNYFLDGRINRAEV 168 G Y+GL AS K VIG +N INR E+ Sbjct: 10 GLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEI 47
>FAS_MOUSE (P19096) Fatty acid synthase (EC 2.3.1.85) [Includes:| [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl- Length = 2504 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/52 (30%), Positives = 22/52 (42%) Frame = -1 Query: 198 NQKTSDAGEKNLRPVDPAVQKIVQCRPYDNLET*GHDLGDRKPDVCPAVLRG 43 N K D E P +V ++ Q Y L G+D G + +C A L G Sbjct: 965 NSKLFDHPEVPTPPESASVSRLTQGEVYKELRLRGYDYGPQFQGICEATLEG 1016
>MSBA_PSESM (Q87VF3) Lipid A export ATP-binding/permease protein msbA| Length = 600 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Frame = +1 Query: 64 YVGLSVTEVMA----SSLKVVIGTTLNYFLDGRINRAEVLFPGV 183 YVG+ + ++ +S + ++ L YF+DG N VLFP V Sbjct: 25 YVGIFLLSILGFVIFASTQPMLAGILKYFVDGLSNPEAVLFPNV 68
>MSBA_PSEPK (Q88D92) Lipid A export ATP-binding/permease protein msbA| Length = 602 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Frame = +1 Query: 64 YVGLSVTEVMA----SSLKVVIGTTLNYFLDGRINRAEVLFPGV 183 YVG+ + ++ +S + ++ L YF+DG N VLFP V Sbjct: 27 YVGIFLLSIVGFVIFASTQPMLAGILKYFVDGLSNPEAVLFPNV 70
>GLPK_BRAJA (Q89UK6) Glycerol kinase (EC 2.7.1.30) (ATP:glycerol| 3-phosphotransferase) (Glycerokinase) (GK) Length = 500 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%) Frame = +1 Query: 118 GTTLNYFLD------GRINRAEVLFPGVGCFLIAACLGSLVHSSNAADNQEKL 258 GT + + LD R R E++F V C+L+ G VH+++A + L Sbjct: 136 GTKVAWILDHVPGARARAARGELMFGTVDCYLLWRLTGGKVHATDATNASRTL 188
>PSBB_HORVU (P10900) Photosystem II P680 chlorophyll A apoprotein (CP-47| protein) Length = 508 Score = 27.7 bits (60), Expect = 7.0 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 10/77 (12%) Frame = +1 Query: 13 GGVVITLGTVATQYGWAYVGLSVTEVMASSLKVV------IGTTLNYFLDGRINRAEVLF 174 GG I+ GTV W+Y G++ T ++ S L + + L F D R + + Sbjct: 76 GGWSISGGTVTNPGIWSYEGVAATHIVFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDL 135 Query: 175 P---GVGCFLI-AACLG 213 P G+ FL AC G Sbjct: 136 PKIFGIHLFLAGVACFG 152
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = +3 Query: 60 GIRRAFGHRGHGLKSQGCHRDDTELFSGRPDQQGGGSFPR 179 G+ R G G G S+G DD + + GGGS+ R Sbjct: 338 GMGRGRGRGGRGGMSKGGMNDDEDFYDDDMGDGGGGSYRR 377
>EPSD1_RALSO (P58591) NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase (EC| 1.1.1.-) Length = 423 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +1 Query: 55 GWAYVGLSVTEVMASSLKVVIGTTLNYFLDGRINRAEV 168 G Y+GL V+AS + VIG +N IN+ + Sbjct: 16 GLGYIGLPTATVLASRQREVIGVDINQHAVDTINQGRI 53
>PUT4_YEAST (P15380) Proline-specific permease| Length = 627 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +1 Query: 145 GRINRAEVLFPGVGCFLIAACLGSLVHSSNAADNQEKLSN 264 GRIN+ V + VG + +CL L SS+ AD SN Sbjct: 446 GRINKWGVPYVAVGVSFLCSCLAYLNVSSSTADVFNWFSN 485
>Y360_HAEIN (P44661) Probable iron transport system membrane protein HI0360| Length = 282 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 11/88 (12%) Frame = +1 Query: 16 GVVITLGTVATQYGWAYV------GLSVTEVMASSLKVVIGTTLNYFLDGR-----INRA 162 G ++ + V T AY+ LS+ ++ ++ +G ++Y+LDG + Sbjct: 196 GAILVIAMVVTPGATAYLLTDKFKTLSIIAIILGAVTSFVGVYISYYLDGATGGVIVTLQ 255 Query: 163 EVLFPGVGCFLIAACLGSLVHSSNAADN 246 +LF + FL + G L + A +N Sbjct: 256 TLLF--LVAFLFSPKYGLLTRNKKAVEN 281
>YCV1_YEAST (P25639) Hypothetical protein YCR061W precursor| Length = 631 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 8/40 (20%) Frame = +1 Query: 7 LAGGVVITLGTV--------ATQYGWAYVGLSVTEVMASS 102 + GGV TLG V A +YGWA+ +S T + + Sbjct: 360 IKGGVFFTLGVVSLARYCGFAAKYGWAWNNISFTSQLTQT 399
>CTF4_YEAST (Q01454) DNA polymerase alpha-binding protein (CTF4 protein)| (Protein POB1) (Chromosome replication protein CHL15) Length = 926 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = +1 Query: 70 GLSVTEVMASSLKVVIGTTLNYF 138 G +T V A+ ++V++GT+L YF Sbjct: 574 GERITSVAATPVRVIVGTSLGYF 596 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,106,360 Number of Sequences: 219361 Number of extensions: 954124 Number of successful extensions: 2880 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2724 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2879 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
