ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast62b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK109368.3| Oryza sativa (japonica cultivar-group) cDNA clon... 264 2e-67
2dbj|AK073310.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 2e-67
3dbj|AK069916.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 2e-67
4dbj|AK064238.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 2e-67
5dbj|AK061376.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 2e-67
6dbj|AK061171.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 2e-67
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 161 2e-36
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 161 2e-36
9emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536... 161 2e-36
10emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510... 161 2e-36
11gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 46 0.084
12gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 42 1.3
13gb|AC109145.11| Mus musculus chromosome 1, clone RP23-109O14, co... 40 5.2
14gb|AC147514.12| Mus musculus chromosome 1, clone RP23-442A6, com... 40 5.2
15gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 5.2
16gb|AC138318.7| Mus musculus chromosome 3, clone RP23-358I23, com... 40 5.2
17gb|AC157088.2| Pan troglodytes BAC clone CH251-497H13 from chrom... 40 5.2
18gb|AC133081.4| Mus musculus BAC clone RP24-290O13 from chromosom... 40 5.2
19emb|CR376861.6| Zebrafish DNA sequence from clone CH211-193L9 in... 40 5.2
20gb|AC137837.3| Medicago truncatula clone mth2-30e7, complete seq... 40 5.2
21emb|AL109965.34|HS1121G12 Human DNA sequence from clone RP5-1121... 40 5.2
22emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome... 40 5.2
23emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 5.2
24emb|CR847859.13| Zebrafish DNA sequence from clone DKEYP-2F4 in ... 40 5.2
25gb|AC153460.22| Medicago truncatula clone mth2-76i7, complete se... 40 5.2
26gb|AC012289.12| Homo sapiens chromosome 18, clone RP11-7E6, comp... 40 5.2
27ref|XM_684151.1| PREDICTED: Danio rerio similar to raptor (LOC56... 40 5.2
28gb|AC005599.5|AC005599 Homo sapiens chromosome 4 clone C0026P05 ... 40 5.2

>dbj|AK109368.3| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-D03, full
           insert sequence
          Length = 1826

 Score =  264 bits (133), Expect = 2e-67
 Identities = 196/217 (90%)
 Strand = Plus / Plus

                                                                       
Query: 41  tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcctcaa 100
           |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||||
Sbjct: 528 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcgtcaa 587

                                                                       
Query: 101 gtctcaaggttgtcatagggacgacactgaactattttctggacggccggatcaacaggg 160
           | || ||||||||||||||||| ||||||||||||||||| || ||||||||||||| ||
Sbjct: 588 gcctgaaggttgtcatagggacaacactgaactattttctcgatggccggatcaacaagg 647

                                                                       
Query: 161 cggaggttcttttccccggcgtcggatgttttctgattgcagcgtgcctaggctcacttg 220
           ||||| ||||||||||||| |||||||| |||||||||||||| ||||| || || ||||
Sbjct: 648 cggagattcttttccccggtgtcggatgctttctgattgcagcctgccttggatctcttg 707

                                                
Query: 221 tccactcctctaatgctgctgacaatcaggagaagct 257
           | ||||| || |||||||||||||| |||||||||||
Sbjct: 708 ttcactcttccaatgctgctgacaaccaggagaagct 744



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                       
Query: 282 tgggaacactgcaaaggaagatctcacccagcgcctccttgaagaagaggaaccaaagga 341
           |||| |||||| ||| ||||| |||||| ||| |||||||||   |||  |||| |||||
Sbjct: 778 tggggacactgaaaatgaagaactcaccaagcacctccttgagatagaacaacccaagga 837

                     
Query: 342 ttgtgaagaa 351
           ||||||||||
Sbjct: 838 ttgtgaagaa 847



to top

>dbj|AK073310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030F01, full
            insert sequence
          Length = 2721

 Score =  264 bits (133), Expect = 2e-67
 Identities = 196/217 (90%)
 Strand = Plus / Plus

                                                                        
Query: 41   tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcctcaa 100
            |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||||
Sbjct: 1423 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcgtcaa 1482

                                                                        
Query: 101  gtctcaaggttgtcatagggacgacactgaactattttctggacggccggatcaacaggg 160
            | || ||||||||||||||||| ||||||||||||||||| || ||||||||||||| ||
Sbjct: 1483 gcctgaaggttgtcatagggacaacactgaactattttctcgatggccggatcaacaagg 1542

                                                                        
Query: 161  cggaggttcttttccccggcgtcggatgttttctgattgcagcgtgcctaggctcacttg 220
            ||||| ||||||||||||| |||||||| |||||||||||||| ||||| || || ||||
Sbjct: 1543 cggagattcttttccccggtgtcggatgctttctgattgcagcctgccttggatctcttg 1602

                                                 
Query: 221  tccactcctctaatgctgctgacaatcaggagaagct 257
            | ||||| || |||||||||||||| |||||||||||
Sbjct: 1603 ttcactcttccaatgctgctgacaaccaggagaagct 1639



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                        
Query: 282  tgggaacactgcaaaggaagatctcacccagcgcctccttgaagaagaggaaccaaagga 341
            |||| |||||| ||| ||||| |||||| ||| |||||||||   |||  |||| |||||
Sbjct: 1673 tggggacactgaaaatgaagaactcaccaagcacctccttgagatagaacaacccaagga 1732

                      
Query: 342  ttgtgaagaa 351
            ||||||||||
Sbjct: 1733 ttgtgaagaa 1742



to top

>dbj|AK069916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038C16, full
           insert sequence
          Length = 2118

 Score =  264 bits (133), Expect = 2e-67
 Identities = 196/217 (90%)
 Strand = Plus / Plus

                                                                       
Query: 41  tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcctcaa 100
           |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||||
Sbjct: 540 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcgtcaa 599

                                                                       
Query: 101 gtctcaaggttgtcatagggacgacactgaactattttctggacggccggatcaacaggg 160
           | || ||||||||||||||||| ||||||||||||||||| || ||||||||||||| ||
Sbjct: 600 gcctgaaggttgtcatagggacaacactgaactattttctcgatggccggatcaacaagg 659

                                                                       
Query: 161 cggaggttcttttccccggcgtcggatgttttctgattgcagcgtgcctaggctcacttg 220
           ||||| ||||||||||||| |||||||| |||||||||||||| ||||| || || ||||
Sbjct: 660 cggagattcttttccccggtgtcggatgctttctgattgcagcctgccttggatctcttg 719

                                                
Query: 221 tccactcctctaatgctgctgacaatcaggagaagct 257
           | ||||| || |||||||||||||| |||||||||||
Sbjct: 720 ttcactcttccaatgctgctgacaaccaggagaagct 756



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                       
Query: 282 tgggaacactgcaaaggaagatctcacccagcgcctccttgaagaagaggaaccaaagga 341
           |||| |||||| ||| ||||| |||||| ||| |||||||||   |||  |||| |||||
Sbjct: 790 tggggacactgaaaatgaagaactcaccaagcacctccttgagatagaacaacccaagga 849

                     
Query: 342 ttgtgaagaa 351
           ||||||||||
Sbjct: 850 ttgtgaagaa 859



to top

>dbj|AK064238.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A09, full
           insert sequence
          Length = 1443

 Score =  264 bits (133), Expect = 2e-67
 Identities = 196/217 (90%)
 Strand = Plus / Plus

                                                                       
Query: 41  tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcctcaa 100
           |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||||
Sbjct: 432 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcgtcaa 491

                                                                       
Query: 101 gtctcaaggttgtcatagggacgacactgaactattttctggacggccggatcaacaggg 160
           | || ||||||||||||||||| ||||||||||||||||| || ||||||||||||| ||
Sbjct: 492 gcctgaaggttgtcatagggacaacactgaactattttctcgatggccggatcaacaagg 551

                                                                       
Query: 161 cggaggttcttttccccggcgtcggatgttttctgattgcagcgtgcctaggctcacttg 220
           ||||| ||||||||||||| |||||||| |||||||||||||| ||||| || || ||||
Sbjct: 552 cggagattcttttccccggtgtcggatgctttctgattgcagcctgccttggatctcttg 611

                                                
Query: 221 tccactcctctaatgctgctgacaatcaggagaagct 257
           | ||||| || |||||||||||||| |||||||||||
Sbjct: 612 ttcactcttccaatgctgctgacaaccaggagaagct 648



to top

>dbj|AK061376.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-G07, full
           insert sequence
          Length = 1828

 Score =  264 bits (133), Expect = 2e-67
 Identities = 196/217 (90%)
 Strand = Plus / Plus

                                                                       
Query: 41  tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcctcaa 100
           |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||||
Sbjct: 528 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcgtcaa 587

                                                                       
Query: 101 gtctcaaggttgtcatagggacgacactgaactattttctggacggccggatcaacaggg 160
           | || ||||||||||||||||| ||||||||||||||||| || ||||||||||||| ||
Sbjct: 588 gcctgaaggttgtcatagggacaacactgaactattttctcgatggccggatcaacaagg 647

                                                                       
Query: 161 cggaggttcttttccccggcgtcggatgttttctgattgcagcgtgcctaggctcacttg 220
           ||||| ||||||||||||| |||||||| |||||||||||||| ||||| || || ||||
Sbjct: 648 cggagattcttttccccggtgtcggatgctttctgattgcagcctgccttggatctcttg 707

                                                
Query: 221 tccactcctctaatgctgctgacaatcaggagaagct 257
           | ||||| || |||||||||||||| |||||||||||
Sbjct: 708 ttcactcttccaatgctgctgacaaccaggagaagct 744



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                       
Query: 282 tgggaacactgcaaaggaagatctcacccagcgcctccttgaagaagaggaaccaaagga 341
           |||| |||||| ||| ||||| |||||| ||| |||||||||   |||  |||| |||||
Sbjct: 778 tggggacactgaaaatgaagaactcaccaagcacctccttgagatagaacaacccaagga 837

                     
Query: 342 ttgtgaagaa 351
           ||||||||||
Sbjct: 838 ttgtgaagaa 847



to top

>dbj|AK061171.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-B06, full
           insert sequence
          Length = 1551

 Score =  264 bits (133), Expect = 2e-67
 Identities = 196/217 (90%)
 Strand = Plus / Plus

                                                                       
Query: 41  tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcctcaa 100
           |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||||
Sbjct: 509 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcgtcaa 568

                                                                       
Query: 101 gtctcaaggttgtcatagggacgacactgaactattttctggacggccggatcaacaggg 160
           | || ||||||||||||||||| ||||||||||||||||| || ||||||||||||| ||
Sbjct: 569 gcctgaaggttgtcatagggacaacactgaactattttctcgatggccggatcaacaagg 628

                                                                       
Query: 161 cggaggttcttttccccggcgtcggatgttttctgattgcagcgtgcctaggctcacttg 220
           ||||| ||||||||||||| |||||||| |||||||||||||| ||||| || || ||||
Sbjct: 629 cggagattcttttccccggtgtcggatgctttctgattgcagcctgccttggatctcttg 688

                                                
Query: 221 tccactcctctaatgctgctgacaatcaggagaagct 257
           | ||||| || |||||||||||||| |||||||||||
Sbjct: 689 ttcactcttccaatgctgctgacaaccaggagaagct 725



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                       
Query: 282 tgggaacactgcaaaggaagatctcacccagcgcctccttgaagaagaggaaccaaagga 341
           |||| |||||| ||| ||||| |||||| ||| |||||||||   |||  |||| |||||
Sbjct: 759 tggggacactgaaaatgaagaactcaccaagcacctccttgagatagaacaacccaagga 818

                     
Query: 342 ttgtgaagaa 351
           ||||||||||
Sbjct: 819 ttgtgaagaa 828



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  161 bits (81), Expect = 2e-36
 Identities = 126/141 (89%)
 Strand = Plus / Minus

                                                                            
Query: 117      agggacgacactgaactattttctggacggccggatcaacagggcggaggttcttttccc 176
                |||||| ||||||||||||||||| || ||||||||||||| ||||||| ||||||||||
Sbjct: 19224584 agggacaacactgaactattttctcgatggccggatcaacaaggcggagattcttttccc 19224525

                                                                            
Query: 177      cggcgtcggatgttttctgattgcagcgtgcctaggctcacttgtccactcctctaatgc 236
                ||| |||||||| |||||||||||||| ||||| || || ||||| ||||| || |||||
Sbjct: 19224524 cggtgtcggatgctttctgattgcagcctgccttggatctcttgttcactcttccaatgc 19224465

                                     
Query: 237      tgctgacaatcaggagaagct 257
                ||||||||| |||||||||||
Sbjct: 19224464 tgctgacaaccaggagaagct 19224444



 Score =  109 bits (55), Expect = 7e-21
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                            
Query: 41       tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcctcaa 100
                |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||||
Sbjct: 19224784 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcgtcaa 19224725

                                   
Query: 101      gtctcaaggttgtcatagg 119
                | || ||||||||||||||
Sbjct: 19224724 gcctgaaggttgtcatagg 19224706



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  161 bits (81), Expect = 2e-36
 Identities = 126/141 (89%)
 Strand = Plus / Minus

                                                                            
Query: 117      agggacgacactgaactattttctggacggccggatcaacagggcggaggttcttttccc 176
                |||||| ||||||||||||||||| || ||||||||||||| ||||||| ||||||||||
Sbjct: 19150811 agggacaacactgaactattttctcgatggccggatcaacaaggcggagattcttttccc 19150752

                                                                            
Query: 177      cggcgtcggatgttttctgattgcagcgtgcctaggctcacttgtccactcctctaatgc 236
                ||| |||||||| |||||||||||||| ||||| || || ||||| ||||| || |||||
Sbjct: 19150751 cggtgtcggatgctttctgattgcagcctgccttggatctcttgttcactcttccaatgc 19150692

                                     
Query: 237      tgctgacaatcaggagaagct 257
                ||||||||| |||||||||||
Sbjct: 19150691 tgctgacaaccaggagaagct 19150671



 Score =  109 bits (55), Expect = 7e-21
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                            
Query: 41       tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcctcaa 100
                |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||||
Sbjct: 19151011 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcgtcaa 19150952

                                   
Query: 101      gtctcaaggttgtcatagg 119
                | || ||||||||||||||
Sbjct: 19150951 gcctgaaggttgtcatagg 19150933



to top

>emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 127026

 Score =  161 bits (81), Expect = 2e-36
 Identities = 126/141 (89%)
 Strand = Plus / Plus

                                                                        
Query: 117  agggacgacactgaactattttctggacggccggatcaacagggcggaggttcttttccc 176
            |||||| ||||||||||||||||| || ||||||||||||| ||||||| ||||||||||
Sbjct: 1361 agggacaacactgaactattttctcgatggccggatcaacaaggcggagattcttttccc 1420

                                                                        
Query: 177  cggcgtcggatgttttctgattgcagcgtgcctaggctcacttgtccactcctctaatgc 236
            ||| |||||||| |||||||||||||| ||||| || || ||||| ||||| || |||||
Sbjct: 1421 cggtgtcggatgctttctgattgcagcctgccttggatctcttgttcactcttccaatgc 1480

                                 
Query: 237  tgctgacaatcaggagaagct 257
            ||||||||| |||||||||||
Sbjct: 1481 tgctgacaaccaggagaagct 1501



 Score =  109 bits (55), Expect = 7e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                        
Query: 41   tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcctcaa 100
            |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||||
Sbjct: 1161 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcgtcaa 1220

                               
Query: 101  gtctcaaggttgtcatagg 119
            | || ||||||||||||||
Sbjct: 1221 gcctgaaggttgtcatagg 1239



to top

>emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510_A06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 136155

 Score =  161 bits (81), Expect = 2e-36
 Identities = 126/141 (89%)
 Strand = Plus / Minus

                                                                         
Query: 117   agggacgacactgaactattttctggacggccggatcaacagggcggaggttcttttccc 176
             |||||| ||||||||||||||||| || ||||||||||||| ||||||| ||||||||||
Sbjct: 57914 agggacaacactgaactattttctcgatggccggatcaacaaggcggagattcttttccc 57855

                                                                         
Query: 177   cggcgtcggatgttttctgattgcagcgtgcctaggctcacttgtccactcctctaatgc 236
             ||| |||||||| |||||||||||||| ||||| || || ||||| ||||| || |||||
Sbjct: 57854 cggtgtcggatgctttctgattgcagcctgccttggatctcttgttcactcttccaatgc 57795

                                  
Query: 237   tgctgacaatcaggagaagct 257
             ||||||||| |||||||||||
Sbjct: 57794 tgctgacaaccaggagaagct 57774



 Score =  109 bits (55), Expect = 7e-21
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                         
Query: 41    tggccacgcagtacggctgggcatacgtcgggctttcggtcaccgaggtcatggcctcaa 100
             |||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||||
Sbjct: 58114 tggccacgcagtacgggtgggcgttcgtcgggctttcggtcaccgaggtcatggcgtcaa 58055

                                
Query: 101   gtctcaaggttgtcatagg 119
             | || ||||||||||||||
Sbjct: 58054 gcctgaaggttgtcatagg 58036



to top

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 5       cgctggcgggcggcgtggtgatc 27
               |||||||||||||||||||||||
Sbjct: 1695353 cgctggcgggcggcgtggtgatc 1695375



to top

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 25      atcaccctcggcaccgtggcc 45
               |||||||||||||||||||||
Sbjct: 1788735 atcaccctcggcaccgtggcc 1788755



to top

>gb|AC109145.11| Mus musculus chromosome 1, clone RP23-109O14, complete sequence
          Length = 186661

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 328   gaggaaccaaaggattgtgaagaa 351
             |||||||||||||| |||||||||
Sbjct: 12334 gaggaaccaaaggactgtgaagaa 12357



to top

>gb|AC147514.12| Mus musculus chromosome 1, clone RP23-442A6, complete sequence
          Length = 187725

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 328    gaggaaccaaaggattgtgaagaa 351
              |||||||||||||| |||||||||
Sbjct: 126948 gaggaaccaaaggactgtgaagaa 126925



to top

>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      gcgctggcgggcggcgtggt 23
              ||||||||||||||||||||
Sbjct: 609345 gcgctggcgggcggcgtggt 609326



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      gcgctggcgggcggcgtggt 23
              ||||||||||||||||||||
Sbjct: 401679 gcgctggcgggcggcgtggt 401660



to top

>gb|AC138318.7| Mus musculus chromosome 3, clone RP23-358I23, complete sequence
          Length = 201126

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 249    ggagaagctatcaaactccagaaa 272
              ||||||| ||||||||||||||||
Sbjct: 130579 ggagaagatatcaaactccagaaa 130556



to top

>gb|AC157088.2| Pan troglodytes BAC clone CH251-497H13 from chromosome unknown,
             complete sequence
          Length = 220527

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 274   tactctactgggaacactgc 293
             ||||||||||||||||||||
Sbjct: 19838 tactctactgggaacactgc 19857



to top

>gb|AC133081.4| Mus musculus BAC clone RP24-290O13 from chromosome 3, complete
            sequence
          Length = 180525

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 249  ggagaagctatcaaactccagaaa 272
            ||||||| ||||||||||||||||
Sbjct: 3799 ggagaagatatcaaactccagaaa 3776



to top

>emb|CR376861.6| Zebrafish DNA sequence from clone CH211-193L9 in linkage group 14,
             complete sequence
          Length = 38313

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   tccactcctctaatgctgct 240
             ||||||||||||||||||||
Sbjct: 33465 tccactcctctaatgctgct 33446



to top

>gb|AC137837.3| Medicago truncatula clone mth2-30e7, complete sequence
          Length = 79015

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 355   aagcctgcactaccaaaggc 374
             ||||||||||||||||||||
Sbjct: 64231 aagcctgcactaccaaaggc 64250



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 355   aagcctgcactaccaaaggc 374
             ||||||||||||||||||||
Sbjct: 57385 aagcctgcactaccaaaggc 57404



to top

>emb|AL109965.34|HS1121G12 Human DNA sequence from clone RP5-1121G12 on chromosome 20 Contains the
             3' end of the C20orf104 gene, the SCAND1 gene for SCAN
             domain containing 1, the 5' end of the C20orf152 gene and
             two CpG islands, complete sequence
          Length = 105230

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   tactctactgggaacactgc 293
             ||||||||||||||||||||
Sbjct: 10550 tactctactgggaacactgc 10531



to top

>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13
          Length = 342416

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      gcgctggcgggcggcgtggt 23
              ||||||||||||||||||||
Sbjct: 266071 gcgctggcgggcggcgtggt 266052



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     gcgctggcgggcggcgtggt 23
             ||||||||||||||||||||
Sbjct: 59712 gcgctggcgggcggcgtggt 59693



to top

>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 2/14
          Length = 324050

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      gcgctggcgggcggcgtggt 23
              ||||||||||||||||||||
Sbjct: 266129 gcgctggcgggcggcgtggt 266110



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     gcgctggcgggcggcgtggt 23
             ||||||||||||||||||||
Sbjct: 59649 gcgctggcgggcggcgtggt 59630



to top

>emb|CR847859.13| Zebrafish DNA sequence from clone DKEYP-2F4 in linkage group 14,
             complete sequence
          Length = 124837

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   tccactcctctaatgctgct 240
             ||||||||||||||||||||
Sbjct: 21492 tccactcctctaatgctgct 21511



to top

>gb|AC153460.22| Medicago truncatula clone mth2-76i7, complete sequence
          Length = 127094

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   aagcctgcactaccaaaggc 374
             ||||||||||||||||||||
Sbjct: 61687 aagcctgcactaccaaaggc 61668



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   aagcctgcactaccaaaggc 374
             ||||||||||||||||||||
Sbjct: 54841 aagcctgcactaccaaaggc 54822



to top

>gb|AC012289.12| Homo sapiens chromosome 18, clone RP11-7E6, complete sequence
          Length = 165022

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 248    aggagaagctatcaaactc-cagaaact 274
              ||||||||||||||||||| ||||||||
Sbjct: 151041 aggagaagctatcaaactctcagaaact 151014



to top

>ref|XM_684151.1| PREDICTED: Danio rerio similar to raptor (LOC560746), mRNA
          Length = 5226

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 221  tccactcctctaatgctgct 240
            ||||||||||||||||||||
Sbjct: 4258 tccactcctctaatgctgct 4239



to top

>gb|AC005599.5|AC005599 Homo sapiens chromosome 4 clone C0026P05 map 4P16, complete sequence
          Length = 145173

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    acactgaactattttctgga 143
              ||||||||||||||||||||
Sbjct: 111099 acactgaactattttctgga 111118


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,092,736
Number of Sequences: 3902068
Number of extensions: 3092736
Number of successful extensions: 53474
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 53255
Number of HSP's gapped (non-prelim): 220
length of query: 387
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 365
effective length of database: 17,147,199,772
effective search space: 6258727916780
effective search space used: 6258727916780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top