ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62a07 |
|---|---|
| Clone Library Name | barley_pub |
>RIP2_ORYSA (Q6H5X0) Putative ripening-related protein 2 precursor| Length = 192 Score = 174 bits (442), Expect(2) = 7e-44 Identities = 75/101 (74%), Positives = 87/101 (86%) Frame = +1 Query: 124 GCEPSGSLRPSRGHSCQDCCKAGQAYPTYRCSPPVSSSTRAVMTLNNFDEGGEGGDPSEC 303 GC PSG+LRPSR HSCQDCCKAG++YPTY CSP + ST+AVMTLN+F+ GG+GGDPSEC Sbjct: 39 GCNPSGTLRPSRSHSCQDCCKAGRSYPTYACSPATTGSTKAVMTLNDFEAGGDGGDPSEC 98 Query: 304 DGKFHHNSERVVALSTGWYSGGSRCGNNVRIRANGRPVLAR 426 DGKFH N+ERVVALSTGWY+ G RC N+RI ANGR VLA+ Sbjct: 99 DGKFHKNTERVVALSTGWYANGRRCNKNIRINANGRSVLAK 139 Score = 21.6 bits (44), Expect(2) = 7e-44 Identities = 8/11 (72%), Positives = 10/11 (90%) Frame = +3 Query: 423 QVVDECDTLTG 455 +VVDECD+L G Sbjct: 139 KVVDECDSLHG 149
>RIP1_ORYSA (Q7XVA8) Putative ripening-related protein 1 precursor| Length = 183 Score = 158 bits (399), Expect = 7e-39 Identities = 72/101 (71%), Positives = 83/101 (82%), Gaps = 1/101 (0%) Frame = +1 Query: 127 CEPSGSLRPSRGHSCQDCCKAGQAYPTYRCSPPVS-SSTRAVMTLNNFDEGGEGGDPSEC 303 C PSG++R S H CQDCCKAGQ+YPTY CSPP + SST AVMTLN+FD GG+GG PSEC Sbjct: 30 CNPSGAIRSSTTHRCQDCCKAGQSYPTYTCSPPTTGSSTDAVMTLNDFDAGGDGGGPSEC 89 Query: 304 DGKFHHNSERVVALSTGWYSGGSRCGNNVRIRANGRPVLAR 426 D +H N+E VVALSTGWY+GGSRCG +VRI ANGR VLA+ Sbjct: 90 DEMYHSNTELVVALSTGWYAGGSRCGKSVRINANGRSVLAK 130
>GRI22_VITVI (Q9M4H4) Ripening-related protein grip22 precursor| Length = 220 Score = 125 bits (315), Expect = 4e-29 Identities = 60/101 (59%), Positives = 74/101 (73%), Gaps = 1/101 (0%) Frame = +1 Query: 127 CEPSGSLRPSRGHSCQDCCKAGQAYPTYRCSPPVSSSTRAVMTLNNFDEGGEGGDPSECD 306 C+PSG+L CK G+ TY CSPP++SST AV+T NNF++GG+GG PS CD Sbjct: 78 CQPSGTL----------ACKGGKPKNTYTCSPPITSSTPAVLTNNNFEKGGDGGGPSACD 127 Query: 307 GKFHHNSERVVALSTGWYSGGSRCGNNVRIRA-NGRPVLAR 426 K+H NSER+VALSTGWY+GGSRCG +RI A NGR VLA+ Sbjct: 128 NKYHDNSERIVALSTGWYNGGSRCGKMIRITAQNGRSVLAK 168
>KIWEL_ACTCH (P84527) Kiwellin (Allergen Act c ?)| Length = 189 Score = 119 bits (298), Expect = 4e-27 Identities = 58/102 (56%), Positives = 76/102 (74%), Gaps = 1/102 (0%) Frame = +1 Query: 124 GCEPSGSLRPSRGHSCQDCCKAGQAYPTYRCSPPVSSSTRAVMTLNNFDEGGEGGDPSEC 303 GC+PSG+L +C+ G++YPTY CSPPV+SST A +T N+F EGG+ G PSEC Sbjct: 47 GCKPSGTL------TCR-----GKSYPTYDCSPPVTSSTPAKLTNNDFSEGGDDGGPSEC 95 Query: 304 DGKFHHNSERVVALSTGWYSGGSRCGNNVRIRA-NGRPVLAR 426 D +H+N+ER+VALSTGWY+GGSRCG +RI A NG+ V A+ Sbjct: 96 DESYHNNNERIVALSTGWYNGGSRCGKMIRITASNGKSVSAK 137
>RIP4_ORYSA (Q9FWU1) Putative ripening-related protein 4 precursor| Length = 377 Score = 102 bits (253), Expect = 6e-22 Identities = 56/111 (50%), Positives = 70/111 (63%), Gaps = 10/111 (9%) Frame = +1 Query: 124 GCEPSGSL-----RPSRGHSCQDCCKAGQAYPTYRCSPPVSSS--TRAVMTLNNFDEGGE 282 GC SG L + +R H DCC G+ YP +RCSPPVSS+ T A +TLN+F GG+ Sbjct: 55 GCHISGFLHGKAGKCNRAHG-SDCCVTGRRYPQFRCSPPVSSARPTPATLTLNSFARGGD 113 Query: 283 GGDPSECDGKFHHNSERVVALSTGW--YSGGSRCGNNVRIRA-NGRPVLAR 426 GG S CDG+FH ++ VVALS+GW G SRC +R+ A NGR LAR Sbjct: 114 GGGRSSCDGRFHPDTAMVVALSSGWLRLDGASRCNRMIRVAAGNGRSALAR 164 Score = 57.8 bits (138), Expect = 1e-08 Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 4/73 (5%) Frame = +1 Query: 235 STRAVMTLNNFDEG-GEGGDPSECDGKFHHNSERVVALSTGWY---SGGSRCGNNVRIRA 402 +T A++TL FD G +GG P+ CD +FH N+E VVALS+GW G RC +R+ A Sbjct: 246 TTPAILTLKVFDHGEDDGGVPTSCDMRFHRNTELVVALSSGWLRLGGGRRRCHRRIRVFA 305 Query: 403 NGRPVLARSSTSA 441 RSS A Sbjct: 306 VAGAASGRSSVVA 318
>RIP3_ORYSA (Q9FWT5) Ripening-related protein 3 precursor| Length = 213 Score = 97.4 bits (241), Expect = 2e-20 Identities = 47/101 (46%), Positives = 66/101 (65%), Gaps = 7/101 (6%) Frame = +1 Query: 127 CEPSGSLRPSRGHSCQD----CCKAGQAYPTYRCSPPVSSS---TRAVMTLNNFDEGGEG 285 C+PSG++ + G D CC+ G Y TY CSPPV++ T A++TLN+F +GG+G Sbjct: 54 CQPSGAITGTSGDCNADNGSECCQDGVQYMTYACSPPVAAGGTGTAALLTLNSFADGGDG 113 Query: 286 GDPSECDGKFHHNSERVVALSTGWYSGGSRCGNNVRIRANG 408 G C G+F+ + + VVALSTGW+ G SRC +V IRA+G Sbjct: 114 GGAPSCTGRFYDDGQLVVALSTGWFDGRSRCEKDVVIRASG 154
>RIP5_ORYSA (Q8LN49) Putative ripening-related protein 5 precursor| Length = 276 Score = 87.8 bits (216), Expect = 1e-17 Identities = 47/108 (43%), Positives = 64/108 (59%), Gaps = 8/108 (7%) Frame = +1 Query: 127 CEPSGSLRPSRGHSCQ-----DCCKAGQAYPTYRCSPPVSSSTRAVMTLNNFDEGGEGGD 291 C PSG L P + +C+ DCC+ G+AYP YR F++G +GG Sbjct: 27 CRPSGYL-PGKSGNCEKSNDPDCCEDGKAYPQYR-----------------FEKGKDGGG 68 Query: 292 PSECDGKFHHNSERVVALSTGWYSGGSRCGNNVRIRAN---GRPVLAR 426 PSECD +H + E VVALSTGW++G +RCG+ VRI A+ GR V+A+ Sbjct: 69 PSECDNAYHSDGELVVALSTGWFAGTARCGHRVRITASGGGGRSVVAK 116
>RIP6_ORYSA (Q7XD66) Putative ripening-related protein 6 precursor| Length = 167 Score = 82.4 bits (202), Expect = 5e-16 Identities = 40/75 (53%), Positives = 51/75 (68%), Gaps = 4/75 (5%) Frame = +1 Query: 211 RCSPPVSSS--TRAVMTLNNFDEGGEGGDPSECDGKFHHNSERVVALSTGWYSGGSRCGN 384 RCS P S T AVMT+N F+EG +GG P+ CDG++H + V ALSTGW++GG RC Sbjct: 49 RCSSPAVSEDGTPAVMTVNGFEEGEDGGGPAACDGRYHSDRSLVAALSTGWFAGGRRCHR 108 Query: 385 NVRI--RANGRPVLA 423 +RI R NGR V+A Sbjct: 109 GIRITSRQNGRSVVA 123
>RIP7_ORYSA (Q7XD65) Putative ripening-related protein 7 precursor| Length = 162 Score = 67.8 bits (164), Expect(2) = 6e-12 Identities = 27/51 (52%), Positives = 38/51 (74%) Frame = +1 Query: 244 AVMTLNNFDEGGEGGDPSECDGKFHHNSERVVALSTGWYSGGSRCGNNVRI 396 AVMT+N F++G +GG P+ CDG +H + E +VALST W++GG RC +RI Sbjct: 50 AVMTVNGFEKGEDGGGPAACDGHYHSDGELIVALSTEWFAGGRRCHRRIRI 100 Score = 21.2 bits (43), Expect(2) = 6e-12 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = +3 Query: 405 RQARACQVVDECDTLTG 455 R+A VVDECD+ G Sbjct: 114 RRAVEATVVDECDSRRG 130
>XGPT_RHIME (Q92PU1) Xanthine phosphoribosyltransferase (EC 2.4.2.22)| (Xanthine-guanine phosphoribosyltransferase) (XGPRT) Length = 165 Score = 31.2 bits (69), Expect = 1.4 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -1 Query: 449 EGVALVDDLASTGLPLARIRTLLPQ 375 EGV +VDDL TG A +R +LP+ Sbjct: 92 EGVLIVDDLTDTGKTAAEVRAMLPR 116
>EXP24_ARATH (Q9FL76) Alpha-expansin 24 precursor (AtEXPA24) (At-EXP24) (AtEx24)| (Ath-ExpAlpha-1.19) Length = 312 Score = 30.8 bits (68), Expect = 1.8 Identities = 28/100 (28%), Positives = 34/100 (34%), Gaps = 3/100 (3%) Frame = +1 Query: 124 GCEPSGSLRPSRG-HSCQDCCKAGQAYPTYRCSPPVSSSTRAVMTLNNFDEGGEGGDPSE 300 G PS PS G H + A P++ P S T GGE + Sbjct: 52 GAHPSHGAHPSHGAHPSHGAHPSHGALPSHGGQVPHSGWGHGRATFYGDINGGETQQGAC 111 Query: 301 CDGKFHHNSE--RVVALSTGWYSGGSRCGNNVRIRANGRP 414 G H ALST ++ GSRCG I P Sbjct: 112 GYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAP 151
>ALL7_ASPFU (O42799) Allergen Asp f 7 precursor| Length = 270 Score = 30.4 bits (67), Expect = 2.3 Identities = 22/64 (34%), Positives = 25/64 (39%) Frame = +1 Query: 217 SPPVSSSTRAVMTLNNFDEGGEGGDPSECDGKFHHNSERVVALSTGWYSGGSRCGNNVRI 396 S P S + V L +D PS C SE VVAL G + CG V I Sbjct: 163 SGPCSKGSPCVGQLTYYDTATSASAPSSCGLTNDGFSENVVALPVGIMTDAD-CGKTVTI 221 Query: 397 RANG 408 NG Sbjct: 222 TYNG 225
>ATP9A_MOUSE (O70228) Probable phospholipid-transporting ATPase IIA (EC 3.6.3.1)| (ATPase class II type 9A) Length = 1047 Score = 30.0 bits (66), Expect = 3.1 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = -2 Query: 421 QARACRWLGSVRCCRSGSPRCTTPWTAPP 335 +A C WL RCC G PR T W P Sbjct: 21 RAGCCEWL---RCCGGGEPRPRTVWLGHP 46
>TRIPB_HUMAN (Q15643) Thyroid receptor-interacting protein 11 (TRIP-11)| (Golgi-associated microtubule-binding protein 210) (GMAP-210) (Trip230) (Clonal evolution related gene on chromosome 14) Length = 1979 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = +1 Query: 298 ECDGKFHHNSERVVALSTGWYSGGSRCGNNVRIRANGRPVLARS 429 E + FH + V TGW GGS+ N +R N + V+ S Sbjct: 1816 EMEQLFHDDQGSVTRWMTGWLGGGSKSVPNTPLRPNQQSVVNSS 1859
>ALK1_PIG (P22298) Antileukoproteinase| Length = 115 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/43 (30%), Positives = 20/43 (46%) Frame = -2 Query: 460 VAPVRVSHSSTTWQARACRWLGSVRCCRSGSPRCTTPWTAPPR 332 +AP V + + AC V+C R P+CT+ W P + Sbjct: 1 MAPWAVEGAENALKGGACPPRKIVQCLRYEKPKCTSDWQCPDK 43
>MBP_CHICK (P15720) Myelin basic protein (MBP)| Length = 173 Score = 29.3 bits (64), Expect = 5.2 Identities = 18/75 (24%), Positives = 31/75 (41%) Frame = +1 Query: 211 RCSPPVSSSTRAVMTLNNFDEGGEGGDPSECDGKFHHNSERVVALSTGWYSGGSRCGNNV 390 R PP+ + R ++L F GGEG P GKF+ + ++ G Sbjct: 95 RTPPPMQAKGRG-LSLTRFSWGGEGHKPGYGSGKFYEHKSAHKGHKGSYHEGQGTLSKIF 153 Query: 391 RIRANGRPVLARSST 435 ++ +G +RS + Sbjct: 154 KLGGSGSRPGSRSGS 168
>ALK1_HUMAN (P03973) Antileukoproteinase 1 precursor (ALP) (HUSI-1) (Seminal| proteinase inhibitor) (Secretory leukocyte protease inhibitor) (BLPI) (Mucus proteinase inhibitor) (MPI) (WAP four-disulfide core domain protein 4) (Protease inhibitor WAP4) Length = 132 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = -2 Query: 460 VAPVRVSHSSTTWQARACRWLGSVRCCRSGSPRCTTPWTAP 338 +AP V S +++A C S +C R P C + W P Sbjct: 18 LAPWAVEGSGKSFKAGVCPPKKSAQCLRYKKPECQSDWQCP 58
>ATG15_ASPFU (Q4X180) Putative lipase atg15 (EC 3.1.1.3) (Autophagy-related| protein 15) Length = 650 Score = 28.5 bits (62), Expect = 8.9 Identities = 22/67 (32%), Positives = 32/67 (47%) Frame = +1 Query: 238 TRAVMTLNNFDEGGEGGDPSECDGKFHHNSERVVALSTGWYSGGSRCGNNVRIRANGRPV 417 T A MT N++ E GD G+F+++S S GW S G R G+ + N V Sbjct: 174 TFAKMTANDYIEEPGSGDWHYIHGRFNYSS------SFGWQSDGLR-GHIYADKTNSTIV 226 Query: 418 LARSSTS 438 ++ TS Sbjct: 227 ISLKGTS 233
>CSPG2_MOUSE (Q62059) Versican core protein precursor (Large fibroblast| proteoglycan) (Chondroitin sulfate proteoglycan core protein 2) (PG-M) Length = 3358 Score = 28.5 bits (62), Expect = 8.9 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%) Frame = +1 Query: 139 GSLRP---SRGHSCQDCCKAGQAYPTYRCSPPVSSSTRAVMTLNNFDEGGEGGDPSECDG 309 G+LR S+G + ++ G +PT+ + ++ T A E GEG + +G Sbjct: 1012 GALRTTGVSQGETQEEPQTPGSPFPTFSSTAVMAKETTAF-------EEGEGSTYTPSEG 1064 Query: 310 KFHHNSERVVALST 351 + SERV L T Sbjct: 1065 RLMTGSERVPGLET 1078
>GRISA_PODAN (Q92258) GRISEA protein (MAC1 homolog)| Length = 597 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = +1 Query: 130 EPSGSLRPSRGHSCQDCCKAGQAYPTYRCSPPV 228 EPS +P G CC G+ P + PPV Sbjct: 260 EPSAMSKPKGGSGGGGCCGGGKKAPQIQAPPPV 292
>XGPT_BRUSU (Q8G0P3) Xanthine phosphoribosyltransferase (EC 2.4.2.22)| (Xanthine-guanine phosphoribosyltransferase) (XGPRT) Length = 165 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = -1 Query: 449 EGVALVDDLASTGLPLARIRTLLPQ 375 EGV +VDDL TG A +R ++P+ Sbjct: 92 EGVIVVDDLTDTGKTAAIVREMMPR 116
>XGPT_AGRT5 (Q8UEM6) Xanthine phosphoribosyltransferase (EC 2.4.2.22)| (Xanthine-guanine phosphoribosyltransferase) (XGPRT) Length = 165 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = -1 Query: 449 EGVALVDDLASTGLPLARIRTLLPQ 375 EGV +VDDL TG +R +LP+ Sbjct: 92 EGVLVVDDLTDTGKTALEVREMLPR 116
>XGPT_BRUME (Q8YH64) Xanthine phosphoribosyltransferase (EC 2.4.2.22)| (Xanthine-guanine phosphoribosyltransferase) (XGPRT) Length = 170 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = -1 Query: 449 EGVALVDDLASTGLPLARIRTLLPQ 375 EGV +VDDL TG A +R ++P+ Sbjct: 92 EGVIVVDDLTDTGKTAAIVREMMPR 116 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.130 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,652,485 Number of Sequences: 219361 Number of extensions: 817161 Number of successful extensions: 2558 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2467 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2552 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
