ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62a05 |
|---|---|
| Clone Library Name | barley_pub |
>RL13A_PICMA (O65055) 60S ribosomal protein L13a| Length = 206 Score = 243 bits (619), Expect = 2e-64 Identities = 117/130 (90%), Positives = 124/130 (95%) Frame = +1 Query: 67 MVSGSGVCAKRVVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 246 MVSGSG+CAK VVVDARHHMLG LASI+AKELL+GQRVVVVRCEEICMSGGLVRQKMKYL Sbjct: 1 MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYL 60 Query: 247 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRT 426 RFLRKRMNTKPSHGPIHFRAP++ILWRTIRGMIPHKT RG AALA L+A+EGVPPPYDR Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRK 120 Query: 427 KRMVIPDALK 456 KRMVIPDALK Sbjct: 121 KRMVIPDALK 130
>R13AB_ARATH (Q9LRX8) 60S ribosomal protein L13a-2| Length = 206 Score = 240 bits (613), Expect = 1e-63 Identities = 113/130 (86%), Positives = 122/130 (93%) Frame = +1 Query: 67 MVSGSGVCAKRVVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 246 MVSGSG+C+KRVVVDARHHM G LASI+AKELLNGQ VVVVRCEEIC+SGGLVRQKMKY+ Sbjct: 1 MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYM 60 Query: 247 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRT 426 RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT RG AALARLK +EGVPPPYD+ Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKV 120 Query: 427 KRMVIPDALK 456 KRMVIPDALK Sbjct: 121 KRMVIPDALK 130
>R13AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4| Length = 206 Score = 240 bits (612), Expect = 1e-63 Identities = 113/130 (86%), Positives = 122/130 (93%) Frame = +1 Query: 67 MVSGSGVCAKRVVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 246 MVSGSG+C+KRVVVDARHHMLG LASI AKELLNGQ+VV+VRCEEIC+SGGLVRQKMKY+ Sbjct: 1 MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYM 60 Query: 247 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRT 426 RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT RG AALARLK YEGVP PYD+ Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKI 120 Query: 427 KRMVIPDALK 456 KRMVIPDALK Sbjct: 121 KRMVIPDALK 130
>R13AC_ARATH (Q9SVR0) 60S ribosomal protein L13a-3| Length = 206 Score = 238 bits (606), Expect = 7e-63 Identities = 112/130 (86%), Positives = 120/130 (92%) Frame = +1 Query: 67 MVSGSGVCAKRVVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 246 MVSGSG+CAKRVVVD RHHMLG LAS AKELLNGQ VVVVRCEEIC+SGGLVRQKMKY+ Sbjct: 1 MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYM 60 Query: 247 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRT 426 RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT RG AALARLK +EG+PPPYD+ Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKI 120 Query: 427 KRMVIPDALK 456 KRMVIPDALK Sbjct: 121 KRMVIPDALK 130
>R13AA_ARATH (Q9SFU1) 60S ribosomal protein L13a-1| Length = 206 Score = 236 bits (602), Expect = 2e-62 Identities = 110/130 (84%), Positives = 121/130 (93%) Frame = +1 Query: 67 MVSGSGVCAKRVVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 246 MVSGSG+CAKRVVVDARHHMLG LAS+VAK+LLNGQ +VVVRCEEIC+SGGLVRQKMKY+ Sbjct: 1 MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYM 60 Query: 247 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRT 426 RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT RG ALARLK +EGVP PYD+ Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKI 120 Query: 427 KRMVIPDALK 456 KRMV+PDALK Sbjct: 121 KRMVVPDALK 130
>RL13A_LUPLU (O49885) 60S ribosomal protein L13a| Length = 205 Score = 226 bits (575), Expect = 3e-59 Identities = 109/130 (83%), Positives = 120/130 (92%) Frame = +1 Query: 67 MVSGSGVCAKRVVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 246 MVSGSG+ AKRVVVDARHHMLG LASIVAKELLNGQ+VV+VR EEIC+SGGLVRQKMKYL Sbjct: 1 MVSGSGIAAKRVVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYL 60 Query: 247 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRT 426 RFLRKRMNTKPSHGPIH AP+KI WRT+RGMIPHKT RGE ALARLK YEG+PPP+D+ Sbjct: 61 RFLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQ 119 Query: 427 KRMVIPDALK 456 KR+V+PDALK Sbjct: 120 KRLVVPDALK 129
>RL13A_CYAPA (P93099) 60S ribosomal protein L13a| Length = 200 Score = 178 bits (452), Expect = 5e-45 Identities = 87/121 (71%), Positives = 99/121 (81%) Frame = +1 Query: 94 KRVVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNT 273 K VVVD R H+LG LA+ +AKELLNGQRVV VR EEI +SG L R K+K+ FL+KRMNT Sbjct: 4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNT 63 Query: 274 KPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDAL 453 P GP HFR+PA+ILWRTIRGMIPHKT RG AAL RLKA+EGVPPPYD+ KRMVIP AL Sbjct: 64 NPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQAL 123 Query: 454 K 456 + Sbjct: 124 R 124
>RL13A_BOVIN (Q3SZ90) 60S ribosomal protein L13a| Length = 202 Score = 173 bits (439), Expect = 2e-43 Identities = 79/119 (66%), Positives = 99/119 (83%) Frame = +1 Query: 100 VVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 279 +V+D R H+LG LA+IVAK++L G++VVVVRCE I +SG R K+KYL FLRKRMNT P Sbjct: 6 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 65 Query: 280 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALK 456 S GP HFRAP++I WRT+RGM+PHKT RG+AAL RLK ++G+PPPYD+ KRMV+P ALK Sbjct: 66 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALK 124
>RL13A_PIG (Q95307) 60S ribosomal protein L13a (Fragment)| Length = 137 Score = 173 bits (438), Expect = 2e-43 Identities = 79/119 (66%), Positives = 99/119 (83%) Frame = +1 Query: 100 VVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 279 +V+D R H+LG LA+IVAK++L G++VVVVRCE I +SG R K+KYL FLRKRMNT P Sbjct: 3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 62 Query: 280 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALK 456 S GP HFRAP++I WRT+RGM+PHKT RG+AAL RLK ++G+PPPYD+ KRMV+P ALK Sbjct: 63 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALK 121
>RL13A_PONPY (Q5RA38) 60S ribosomal protein L13a| Length = 202 Score = 173 bits (438), Expect = 2e-43 Identities = 79/119 (66%), Positives = 99/119 (83%) Frame = +1 Query: 100 VVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 279 +V+D R H+LG LA+IVAK++L G++VVVVRCE I +SG R K+KYL FLRKRMNT P Sbjct: 6 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSP 65 Query: 280 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALK 456 S GP HFRAP++I WRT+RGM+PHKT RG+AAL RLK ++G+PPPYD+ KRMV+P ALK Sbjct: 66 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALK 124
>RL13A_MACFA (Q4R8Z2) 60S ribosomal protein L13a| Length = 202 Score = 173 bits (438), Expect = 2e-43 Identities = 79/119 (66%), Positives = 99/119 (83%) Frame = +1 Query: 100 VVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 279 +V+D R H+LG LA+IVAK++L G++VVVVRCE I +SG R K+KYL FLRKRMNT P Sbjct: 6 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 65 Query: 280 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALK 456 S GP HFRAP++I WRT+RGM+PHKT RG+AAL RLK ++G+PPPYD+ KRMV+P ALK Sbjct: 66 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALK 124
>RL13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly basic protein)| Length = 202 Score = 173 bits (438), Expect = 2e-43 Identities = 79/119 (66%), Positives = 99/119 (83%) Frame = +1 Query: 100 VVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 279 +V+D R H+LG LA+IVAK++L G++VVVVRCE I +SG R K+KYL FLRKRMNT P Sbjct: 6 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 65 Query: 280 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALK 456 S GP HFRAP++I WRT+RGM+PHKT RG+AAL RLK ++G+PPPYD+ KRMV+P ALK Sbjct: 66 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALK 124
>RL13A_RAT (P35427) 60S ribosomal protein L13a| Length = 202 Score = 172 bits (436), Expect = 4e-43 Identities = 79/119 (66%), Positives = 98/119 (82%) Frame = +1 Query: 100 VVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 279 +V+D R H+LG LA+IVAK++L G++VVVVRCE I +SG R K+KYL FLRKRMNT P Sbjct: 6 LVLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 65 Query: 280 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALK 456 S GP HFRAP++I WRT+RGM+PHKT RG+AAL RLK +G+PPPYD+ KRMV+P ALK Sbjct: 66 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALK 124
>RL13A_MOUSE (P19253) 60S ribosomal protein L13a (Transplantation antigen P198)| (Tum-P198 antigen) Length = 202 Score = 172 bits (435), Expect = 5e-43 Identities = 79/119 (66%), Positives = 98/119 (82%) Frame = +1 Query: 100 VVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 279 +V+D R H+LG LA+IVAK++L G++VVVVRCE I +SG R K+KYL FLRKRMNT P Sbjct: 6 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 65 Query: 280 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALK 456 S GP HFRAP++I WRT+RGM+PHKT RG+AAL RLK +G+PPPYD+ KRMV+P ALK Sbjct: 66 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALK 124
>RL13A_SPOFR (Q962U0) 60S ribosomal protein L13A| Length = 204 Score = 168 bits (425), Expect = 7e-42 Identities = 74/126 (58%), Positives = 99/126 (78%) Frame = +1 Query: 79 SGVCAKRVVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLR 258 +G K +V+D R H+LG LA+++AK LL G +VVVVRCE+I +SG R K+K++ FLR Sbjct: 2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLR 61 Query: 259 KRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMV 438 KR N P+ GP HFRAP+KILW+T+RGMIPHKT RG++AL RL+AY+G PPPYD +R+V Sbjct: 62 KRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVV 121 Query: 439 IPDALK 456 +P AL+ Sbjct: 122 VPAALR 127
>RL13A_CHOPR (Q8MUR4) 60S ribosomal protein L13A| Length = 204 Score = 165 bits (417), Expect = 6e-41 Identities = 72/126 (57%), Positives = 98/126 (77%) Frame = +1 Query: 79 SGVCAKRVVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLR 258 +G K +V+D R H+LG LA+++AK LL G +VVVVRCE++ +SG R K+K++ FLR Sbjct: 2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLR 61 Query: 259 KRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMV 438 KR N P+ GP HFRAP+KILW+T+RGMIPHKT RG+ AL RL++Y+G PPPYD +R+V Sbjct: 62 KRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVV 121 Query: 439 IPDALK 456 +P AL+ Sbjct: 122 VPAALR 127
>RL13A_SALTR (Q91487) 60S ribosomal protein L13a (Transplantation antigen P198| homolog) (Fragment) Length = 189 Score = 164 bits (414), Expect = 1e-40 Identities = 76/111 (68%), Positives = 91/111 (81%) Frame = +1 Query: 124 MLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFR 303 +LG LA+IVA E+L G +VVVVRCE I +SG R K+KYL FLRKRMNT PS GP HFR Sbjct: 1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFR 60 Query: 304 APAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALK 456 AP++I WRT+RGM+PHKT RG+AAL RLK ++GVPPPYD+ KRMV+P ALK Sbjct: 61 APSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALK 111
>RL13A_DROME (Q9VNE9) 60S ribosomal protein L13A| Length = 205 Score = 157 bits (396), Expect = 2e-38 Identities = 69/126 (54%), Positives = 98/126 (77%) Frame = +1 Query: 79 SGVCAKRVVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLR 258 +G+ + VV+D R H+LG LAS+VAK LL G +V VVRCEE+ +SG R K+K+L +LR Sbjct: 2 TGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLR 61 Query: 259 KRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMV 438 KR N P+ GP HFRAP++I ++ +RGMIPHKT RG+AALARL+ ++G+P PYD+ +R+V Sbjct: 62 KRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVV 121 Query: 439 IPDALK 456 +P A++ Sbjct: 122 VPIAMR 127
>RL16B_SCHPO (O42991) 60S ribosomal protein L16-B| Length = 197 Score = 156 bits (394), Expect = 3e-38 Identities = 72/121 (59%), Positives = 95/121 (78%) Frame = +1 Query: 94 KRVVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNT 273 K VV+DA+ H+LG LAS+VAK+LL GQ+VVVVRCEE+ +SG R K+KYL +LRK Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65 Query: 274 KPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDAL 453 PS G HFRAP++I + +RGM+PHKTARG+AAL L+A EG+PPP+D+ KR+V+P AL Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125 Query: 454 K 456 + Sbjct: 126 R 126
>RL16A_SCHPO (O42848) 60S ribosomal protein L16-A| Length = 197 Score = 156 bits (394), Expect = 3e-38 Identities = 72/121 (59%), Positives = 95/121 (78%) Frame = +1 Query: 94 KRVVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNT 273 K VV+DA+ H+LG LAS+VAK+LL GQ+VVVVRCEE+ +SG R K+KYL +LRK Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65 Query: 274 KPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDAL 453 PS G HFRAP++I + +RGM+PHKTARG+AAL L+A EG+PPP+D+ KR+V+P AL Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125 Query: 454 K 456 + Sbjct: 126 R 126
>RL16_NEUCR (Q9P720) 60S ribosomal protein L16| Length = 202 Score = 155 bits (393), Expect = 4e-38 Identities = 73/120 (60%), Positives = 94/120 (78%), Gaps = 1/120 (0%) Frame = +1 Query: 100 VVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 279 VV+D + H+LG LASIVAK+LLNGQ++VVVRCE + +SG R K+KY +LRK P Sbjct: 8 VVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNP 67 Query: 280 SHG-PIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALK 456 + G P HFRAP++I ++ +RGMIPHKTARG AAL RLK +EGVPPPYD+ K+MV+P AL+ Sbjct: 68 TRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALR 127
>RL13A_CAEEL (Q27389) 60S ribosomal protein L13a| Length = 202 Score = 152 bits (383), Expect = 5e-37 Identities = 69/126 (54%), Positives = 91/126 (72%) Frame = +1 Query: 82 GVCAKRVVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRK 261 G+ + +++D ++H+LG LASIVAK+LL G +VVV+R EEI +SG R K+KY+ FLRK Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61 Query: 262 RMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVI 441 R N P+ G H+RAP KI WRT+RGM+PHKT RG AL L+AYEGVP Y +TK + Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHA 121 Query: 442 PDALKF 459 P A +F Sbjct: 122 PSASRF 127
>RL16A_YEAST (P26784) 60S ribosomal protein L16-A (L13A) (RP22)| Length = 198 Score = 151 bits (381), Expect = 9e-37 Identities = 68/119 (57%), Positives = 93/119 (78%) Frame = +1 Query: 100 VVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 279 VV+D + H++G LAS+VAK+LLNGQ++VVVR EE+ +SG R K+KY FLRK Sbjct: 6 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNK 65 Query: 280 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALK 456 + GP HFRAP++I ++ +RGM+ HKTARG+AAL RLK +EG+PPPYD+ KR+V+P AL+ Sbjct: 66 TRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALR 124
>RL16B_YEAST (P26785) 60S ribosomal protein L16-B (YL15) (RP23)| Length = 197 Score = 150 bits (380), Expect = 1e-36 Identities = 69/119 (57%), Positives = 93/119 (78%) Frame = +1 Query: 100 VVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 279 VV+DA+ H+LG LAS +AK++LNGQ++VVVR E + +SG R K+KY FLRK Sbjct: 5 VVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNK 64 Query: 280 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALK 456 + GP HFRAP++IL++ IRGM+ HKTARG+AAL RLK +EG+PPPYD+ KR+V+P AL+ Sbjct: 65 TRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALR 123
>RL16C_SCHPO (O43004) 60S ribosomal protein L16-C| Length = 197 Score = 149 bits (376), Expect = 3e-36 Identities = 68/121 (56%), Positives = 91/121 (75%) Frame = +1 Query: 94 KRVVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNT 273 K V++DA+ H++G LAS VAK+LL GQ+VVVVRCEE+ +SG R K+KYL +LRK Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65 Query: 274 KPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDAL 453 PS G HFRAP++I + +RGM+PHKT RG AL L+A EG+PPP+D+ KR+V+P AL Sbjct: 66 NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125 Query: 454 K 456 + Sbjct: 126 R 126
>RLSX_METTH (O26146) Fused L13/S9 ribosomal protein [Includes: 50S ribosomal| protein L13P; 30S ribosomal protein S9P] Length = 282 Score = 82.8 bits (203), Expect = 4e-16 Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 1/118 (0%) Frame = +1 Query: 100 VVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 279 ++++ H+LG LAS+V+K+LL G+ V+V+ E+I ++G KY + + + + P Sbjct: 4 MIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNP 63 Query: 280 SH-GPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDA 450 GP + R P I RT+RGM+P+K ++G A LKAY G+P + + + IPDA Sbjct: 64 RRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA 121
>RL13_ARCFU (O29137) 50S ribosomal protein L13P| Length = 156 Score = 82.0 bits (201), Expect = 7e-16 Identities = 47/117 (40%), Positives = 67/117 (57%) Frame = +1 Query: 103 VVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPS 282 V+DA H+LG L+S +AK LLNG+R+VVV E+ ++G + M + R+ K Sbjct: 18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGD---KYMVFERYKEKYDRGSKE 74 Query: 283 HGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDAL 453 GP R P +I RT+RGM+P K++RG A RL+ + GVP + I DAL Sbjct: 75 KGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL 131
>RL13_PYRAB (Q9V196) 50S ribosomal protein L13P| Length = 142 Score = 77.0 bits (188), Expect = 2e-14 Identities = 45/116 (38%), Positives = 64/116 (55%) Frame = +1 Query: 103 VVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPS 282 +++A +LG LAS VAK LL G+ VV+V E+ ++G KY + R T P Sbjct: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62 Query: 283 HGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDA 450 GP + + +I+ RTIRGM+P KT RG A RLK Y G+P + + I +A Sbjct: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA 118
>RL13_PYRHO (O59300) 50S ribosomal protein L13P| Length = 142 Score = 76.6 bits (187), Expect = 3e-14 Identities = 45/116 (38%), Positives = 64/116 (55%) Frame = +1 Query: 103 VVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPS 282 +++A +LG LAS VAK LL G+ VV+V E+ ++G KY + R T P Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62 Query: 283 HGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDA 450 GP + + +I+ RTIRGM+P KT RG A RLK Y G+P + + I +A Sbjct: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA 118
>RL13_AERPE (Q9YB50) 50S ribosomal protein L13P| Length = 155 Score = 70.9 bits (172), Expect = 2e-12 Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Frame = +1 Query: 91 AKRVVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMN 270 A+ +VVD ++G LAS+VAK LL G RV VV E+I +SG R ++ R + Sbjct: 8 AREIVVDGSGMIMGRLASVVAKLLLAGWRVNVVNAEKIVLSGD-PRMVVESYRTTVLGVK 66 Query: 271 TKPSHG--PIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIP 444 + SH P R P ++ +RGM+P ARG ALARL+ Y GVP + + P Sbjct: 67 SHFSHKWRPKRPRTPQRLFKHAVRGMLPKNKARGRRALARLRVYVGVPDELKGREFVRFP 126 Query: 445 DA 450 +A Sbjct: 127 EA 128
>RL13_HALMA (P29198) 50S ribosomal protein L13P (Hmal13)| Length = 145 Score = 66.2 bits (160), Expect = 4e-11 Identities = 41/107 (38%), Positives = 60/107 (56%) Frame = +1 Query: 100 VVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 279 V+VDAR ++G +AS VA++ L+G+ V VV E ++G + KY KR++ Sbjct: 10 VIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKY----EKRVDIGN 65 Query: 280 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYD 420 +G + + P I RTIRGM+PHK RG A ++ Y G PYD Sbjct: 66 DNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLG--NPYD 110
>RL13_METJA (P54023) 50S ribosomal protein L13P| Length = 137 Score = 64.7 bits (156), Expect = 1e-10 Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 1/103 (0%) Frame = +1 Query: 103 VVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPS 282 V+DA +LG LAS VAK +L G+ +V+V E + ++G Y K+ P Sbjct: 3 VIDAEGAILGRLASEVAKRVLRGEEIVIVNAEMVVITGNKDWIIKTYQEEREKKNVANPR 62 Query: 283 H-GPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVP 408 GP R P IL RTIR M+P+K +G A R+K Y G P Sbjct: 63 RFGPKFPRRPDDILRRTIRKMLPYKKPKGREAFKRVKVYVGNP 105
>RL13_HALSA (Q9HQJ3) 50S ribosomal protein L13P| Length = 145 Score = 62.4 bits (150), Expect = 5e-10 Identities = 40/107 (37%), Positives = 54/107 (50%) Frame = +1 Query: 100 VVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 279 VVVDAR ++G +AS VA+ L G RV VV E+ ++G + R R N Sbjct: 10 VVVDARDCIMGRVASNVAERALAGDRVAVVNAEQAVITG----TEDDVFSTYRTRANLGS 65 Query: 280 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYD 420 GP + + P I R IRGM+P+K G AL ++ Y G P D Sbjct: 66 DRGPYYPKRPDGIFKRAIRGMLPYKQDDGREALDSVRVYVGNPMDED 112
>RL13_SULSO (P95991) 50S ribosomal protein L13P| Length = 149 Score = 62.0 bits (149), Expect = 7e-10 Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Frame = +1 Query: 100 VVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 279 V+++A +LG +AS V + L G++V++V E+ +SG R Y L + P Sbjct: 10 VIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVKTLFNP 69 Query: 280 SHGPIHF-RAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDA 450 I R+P I+ RTIRGM+P K+++G L +K Y GVP ++ + + PD+ Sbjct: 70 YRNGIRRPRSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFEGRQFIKFPDS 126
>RL13_SULAC (P39473) 50S ribosomal protein L13P| Length = 148 Score = 61.2 bits (147), Expect = 1e-09 Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Frame = +1 Query: 100 VVVDARHHMLGHLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKY-LRFLRKRMNTK 276 V+VDA + +LG +++ +AK L +G++V VV E+ +SG R Y L F K M Sbjct: 8 VIVDATNQILGRMSTHIAKLLKSGKKVYVVNAEKAIISGPRSRVLEGYSLLFTVKTMQNP 67 Query: 277 PSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDA 450 G R P I+ RT+RGM+P K G+ LKAY G+P + + DA Sbjct: 68 YRQGIRRPRNPINIVKRTVRGMLP-KNKLGKQIYRNLKAYIGIPKELEGKSMIRFDDA 124
>RL13_THEMA (Q9X1G5) 50S ribosomal protein L13| Length = 149 Score = 46.2 bits (108), Expect = 4e-05 Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 20/141 (14%) Frame = +1 Query: 67 MVSGSGVCAKRVVVDARHHMLGHLASIVAKELL------------NGQRVVVVRCEEICM 210 M+ V K VVDA +LG LA+ +AK L+ G V+VV +++ + Sbjct: 12 MIKPEEVERKWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVL 71 Query: 211 SGGLVRQKMKY--------LRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARG 366 +G + QK+ Y L+ L R + + P +++W ++ M+P K +G Sbjct: 72 TGKKLDQKVYYWHSGYPGGLKSLTARQMLE--------KHPERLIWLAVKRMLP-KNRKG 122 Query: 367 EAALARLKAYEGVPPPYDRTK 429 L RLK Y P+ K Sbjct: 123 RKMLKRLKVYASPEHPHQAQK 143
>RK13_SPIOL (P12629) 50S ribosomal protein L13, chloroplast precursor (CL13)| Length = 250 Score = 42.7 bits (99), Expect = 4e-04 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 12/129 (9%) Frame = +1 Query: 94 KRVVVDARHHMLGHLASIVA-----KELLN-------GQRVVVVRCEEICMSGGLVRQKM 237 K VVDA +LG +AS +A K L + G V+VV +++ +SG QK+ Sbjct: 113 KWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKL 172 Query: 238 KYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPY 417 R + + + R P +I+ +RGM+P K G LK Y+G P+ Sbjct: 173 YRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLP-KGRLGRYLFNHLKVYKGAEHPH 231 Query: 418 DRTKRMVIP 444 + + +P Sbjct: 232 QAQQPIDLP 240
>RL13_STRCO (Q53874) 50S ribosomal protein L13| Length = 147 Score = 42.4 bits (98), Expect = 6e-04 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 12/117 (10%) Frame = +1 Query: 103 VVDARHHMLGHLAS------------IVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 246 V+DA+ +LG LA+ I A + G V+++ +++ +SG QKM Y Sbjct: 17 VIDAQDVVLGRLATTAASILRGKHKPIYAPHVDTGDFVIIINADKVHLSGNKRTQKMAYR 76 Query: 247 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPY 417 + + + P K + + I+GM+P K + G L++LK Y+G P+ Sbjct: 77 HSGYPGGLRSVRYDELLDKNPEKAVEKAIKGMLP-KNSLGRQMLSKLKVYKGDQHPH 132
>RL13_STAS1 (Q49ZD6) 50S ribosomal protein L13| Length = 145 Score = 42.4 bits (98), Expect = 6e-04 Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 12/129 (9%) Frame = +1 Query: 67 MVSGSGVCAKRVVVDARHHMLGHLASIVAKELLN------------GQRVVVVRCEEICM 210 M + S + K V+DA LG L+S VA L G V+V+ +I Sbjct: 6 MANESNIERKWYVIDAEGKTLGRLSSEVAAILRGKNKVTYTPHVDTGDYVIVINASKIHF 65 Query: 211 SGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLK 390 +G R KM Y S G + P ++L +I+GM+P T GE +L Sbjct: 66 TGNKERDKMYYRHSNHPGGIKSISAGELKANNPERLLENSIKGMLP-STRLGEKQGKKLF 124 Query: 391 AYEGVPPPY 417 Y G P+ Sbjct: 125 VYGGAEHPH 133
>RL13_DEIRA (Q9RXY1) 50S ribosomal protein L13| Length = 174 Score = 42.4 bits (98), Expect = 6e-04 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 14/128 (10%) Frame = +1 Query: 100 VVVDARHHMLGHLASIVAKEL------------LNGQRVVVVRCEEICMSGGLVRQKMKY 243 VVVDA LG LA+++A + + G VVV+ ++ ++G + K+ Y Sbjct: 42 VVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKV-Y 100 Query: 244 LRFLRKR--MNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPY 417 R+ + + T+ + + + P +++ + GM+P K +G A RLK Y G P+ Sbjct: 101 TRYTGYQGGLKTETAREALS-KHPERVIEHAVFGMLP-KGRQGRAMHTRLKVYAGETHPH 158 Query: 418 DRTKRMVI 441 K V+ Sbjct: 159 SAQKPQVL 166
>RL13_SYNY3 (P73294) 50S ribosomal protein L13| Length = 151 Score = 41.2 bits (95), Expect = 0.001 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 12/120 (10%) Frame = +1 Query: 94 KRVVVDARHHMLGHLASIVAKELLN------------GQRVVVVRCEEICMSGGLVRQKM 237 K V+DA LG LA+ VA L G V+++ E+I ++G QK+ Sbjct: 15 KWYVIDAEGQRLGRLATEVATILRGKNKPTFTPHMDTGDFVIIINAEKIEVTGRKREQKL 74 Query: 238 KYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPY 417 R + + + R P +I+ +RGM+P K + G +LK Y G P+ Sbjct: 75 YRRHSGRPGGMKEETFEKLQVRLPERIVESAVRGMLP-KNSLGRKLFTKLKVYAGPSHPH 133
>RK13_GUITH (O46915) Chloroplast 50S ribosomal protein L13| Length = 143 Score = 37.4 bits (85), Expect = 0.019 Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 12/121 (9%) Frame = +1 Query: 94 KRVVVDARHHMLGHLASIVAKELLN------------GQRVVVVRCEEICMSGGLVRQKM 237 K ++DA LG LAS AK L+ +V++ ++I ++G K Sbjct: 15 KWFIIDATDKNLGRLASETAKTLVGKYDPLYAPNVNPKNIIVIINADKIRVTGNKKFDKF 74 Query: 238 KYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPY 417 Y + T + + R P +IL + ++G++P K G LK Y G P+ Sbjct: 75 YYRHSGQVGGLTIETFNELQSRLPGRILEKAVKGILP-KGPLGRELFNNLKVYAGSSHPH 133 Query: 418 D 420 + Sbjct: 134 E 134
>RM23_YEAST (Q12487) 60S ribosomal protein L23, mitochondrial precursor (YmL23)| Length = 163 Score = 37.0 bits (84), Expect = 0.025 Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 19/129 (14%) Frame = +1 Query: 127 LGHLASIVAKELLN------------GQRVVVVRCEEICMSGGLVRQKMKYLRFLRK-RM 267 LG LAS +A L+ G VVV C++I ++G QK + R ++ Sbjct: 28 LGRLASAIAITLIGRHKPVYHPSQDCGDYVVVTNCQKIRVTGKKFEQKTYWSHSGRPGQL 87 Query: 268 NTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRT------K 429 + + + + +IL + + GM+P R + L RLK ++G PY + + Sbjct: 88 KLQTMNKVVADKGFGEILKKAVSGMLPKNKLR-KQRLDRLKVFDGSENPYKQNITAFAHE 146 Query: 430 RMVIPDALK 456 + IP+ LK Sbjct: 147 QSSIPEPLK 155
>RL13_AQUAE (O67722) 50S ribosomal protein L13| Length = 144 Score = 37.0 bits (84), Expect = 0.025 Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 22/131 (16%) Frame = +1 Query: 103 VVDARHHMLGHLASIVAKELLN------------GQRVVVVRCEEICMSGGLVRQKMKYL 246 VVDA LG LAS +AK L G V+V+ E+I ++G + QK Y Sbjct: 17 VVDATGKTLGRLASEIAKILRGKHKPYYQPDVDCGDFVIVINAEKIRVTGKKLEQKKYYW 76 Query: 247 ----------RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAY 396 R L+ + KP +++ ++ M+P K G L +LK Y Sbjct: 77 HSRYPGGLKERTLKWMLENKPE----------EVIRLAVKRMLP-KNRLGHRMLKKLKVY 125 Query: 397 EGVPPPYDRTK 429 G P+ K Sbjct: 126 RGPEHPHQAQK 136
>RL13_CHLPN (Q9Z8T7) 50S ribosomal protein L13| Length = 149 Score = 35.0 bits (79), Expect = 0.093 Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 13/125 (10%) Frame = +1 Query: 67 MVSGSGVCAKRVVVDARHHMLGHLASIVAKELLN------------GQRVVVVRCEEICM 210 +V S VVDA LG L+S VAK L G V+V+ E++ + Sbjct: 11 IVKSSETTKSWYVVDAAGKTLGRLSSEVAKILRGKHKVTYTPHVAMGDGVIVINAEKVRL 70 Query: 211 SGGLVRQKM-KYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARL 387 +G QK+ +Y M P + R P I+ I+GM+P +T G+ L L Sbjct: 71 TGAKKGQKIYRYYTGYISGMREIPFEN-MMARKPNYIIEHAIKGMMP-RTRLGKKQLKSL 128 Query: 388 KAYEG 402 + +G Sbjct: 129 RIVKG 133
>RL13_TREPA (O83988) 50S ribosomal protein L13| Length = 142 Score = 34.7 bits (78), Expect = 0.12 Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 12/118 (10%) Frame = +1 Query: 103 VVDARHHMLGHLASIVAKELLN------------GQRVVVVRCEEICMSGGLVRQKMKYL 246 ++DA LG +A+ VA L G VVV+ E++ +SG + KM Y Sbjct: 17 LIDAAGRPLGRVAARVACLLRGKHKASYTPNQEMGDYVVVINAEKVFLSGTKPKDKMYYR 76 Query: 247 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYD 420 S + R P + L ++GM+P K G + +K Y G P++ Sbjct: 77 HSGYPGGLKSVSFSALVKRRPVEPLRHAVKGMLP-KGPLGRKLIKNVKIYAGSVHPHE 133
>RL13_HELPY (P56038) 50S ribosomal protein L13| Length = 141 Score = 34.7 bits (78), Expect = 0.12 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 12/118 (10%) Frame = +1 Query: 100 VVVDARHHMLGHLASIVAKELLNGQR------------VVVVRCEEICMSGGLVRQKMKY 243 VV+DA+ + G L + +A L R VVV+ ++ SG + K + Sbjct: 15 VVLDAKDKVFGRLITEIAVLLRGKHRPFYTPNVDCGDFVVVINANKVKFSGMKLEDKEYF 74 Query: 244 LRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPY 417 + + +AP K+ +RGM+P KT G+A + +LK Y P+ Sbjct: 75 THSGYFGSTKSKTLQEMLEKAPEKLYHLAVRGMLP-KTKLGKAMIKKLKVYRDDKHPH 131
>IRX4_CHICK (Q9YGS0) Iroquois-class homeodomain protein IRX-4 (Iroquois| homeobox protein 4) Length = 485 Score = 33.5 bits (75), Expect = 0.27 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Frame = +3 Query: 282 PRPHPLPRPGQDPLAHHPRYDSAQDRE----GRGRACQAQGVRGCAAAV 416 P PHPLP G P A P +A++ E R R C C AA+ Sbjct: 279 PHPHPLPGGGPPPRAAEPPAAAAEEEEEEAAERARGCLKPAAEECEAAL 327
>IF2_METCA (Q609C0) Translation initiation factor IF-2| Length = 868 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = +3 Query: 279 IPRPHPLPRPGQDPLAHHPRYDSAQDREGRGRACQAQGVRGCAAAVRQDQ 428 IPRP P PRP P A P+ ++ + R +A+G + A R+D+ Sbjct: 195 IPRPAPEPRPPARPSAGKPKAEAPRAHPAE-RETEARGDKRSAGLSRKDE 243
>CAPU_DROME (Q24120) Protein cappuccino| Length = 1059 Score = 30.0 bits (66), Expect = 3.0 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = +3 Query: 3 PPPPPELQTLVAAPPP 50 PPPPP L VA PPP Sbjct: 488 PPPPPPLHAFVAPPPP 503
>NAT6_MOUSE (Q9R123) N-acetyltransferase 6 (EC 2.3.1.-) (Fus-2 protein) (Fusion| 2 protein) Length = 314 Score = 29.6 bits (65), Expect = 3.9 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +3 Query: 3 PPPPPELQTLVAAPPP 50 PPPPP Q+L A+PPP Sbjct: 270 PPPPPLPQSLTASPPP 285
>P53_CHICK (P10360) Cellular tumor antigen p53 (Tumor suppressor p53)| Length = 367 Score = 29.3 bits (64), Expect = 5.1 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = +3 Query: 3 PPPPPELQTLVAAPPP 50 PPPPP L AAPPP Sbjct: 52 PPPPPPLPLAAAAPPP 67
>VPAP_HCMVA (P16790) DNA polymerase processivity factor (Polymerase accessory| protein) (PAP) (ICP36 protein) Length = 433 Score = 29.3 bits (64), Expect = 5.1 Identities = 12/16 (75%), Positives = 13/16 (81%) Frame = -2 Query: 49 GGGAATRVWSSGGGGG 2 GGG+ TR SSGGGGG Sbjct: 345 GGGSGTRKMSSGGGGG 360
>ZIC5_HUMAN (Q96T25) Zinc finger protein ZIC 5 (Zinc finger protein of the| cerebellum 5) Length = 639 Score = 28.9 bits (63), Expect = 6.7 Identities = 12/27 (44%), Positives = 12/27 (44%) Frame = +3 Query: 270 HQAIPRPHPLPRPGQDPLAHHPRYDSA 350 H P P P P P Q P HHP A Sbjct: 330 HAPPPAPPPPPAPAQHPHQHHPHLPGA 356
>PPARB_MOUSE (P35396) Peroxisome proliferator-activated receptor delta| (PPAR-delta) (PPAR-beta) (Nuclear hormone receptor 1) (NUC1) Length = 440 Score = 28.9 bits (63), Expect = 6.7 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Frame = +1 Query: 190 RCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHF-RAPAKILWRTIRGMIPHKTARG 366 +C+ IC R K +Y RF +K + SH I F R P + + G+ + + Sbjct: 109 KCDRICKIQKKNRNKCQYCRF-QKCLALGMSHNAIRFGRMPEAEKRKLVAGLTASEGCQH 167 Query: 367 EAALARLKAY 396 LA LKA+ Sbjct: 168 NPQLADLKAF 177
>PTPA1_CANAL (Q5ADP9) Serine/threonine-protein phosphatase 2A activator 1 (EC| 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1) (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl phosphatase activator 1) Length = 424 Score = 28.9 bits (63), Expect = 6.7 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = -1 Query: 221 RPPDMQISSQRTTTTRCPLSSSLATIDARWPSMWWRASTT 102 +PP+ ++S TTTT +SSS + I P+ W +TT Sbjct: 371 KPPETTLNSTTTTTTTTKVSSSTSKIPFT-PAPWANTTTT 409
>HD_MOUSE (P42859) Huntingtin (Huntington disease protein homolog) (HD| protein) Length = 3119 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +3 Query: 273 QAIPRPHPLPRPGQDPLAHHPRYDSAQDREGRGRAC 380 Q P P PLP P ++PL H P+ + + ++ R C Sbjct: 48 QPPPPPPPLPGPAEEPL-HRPKKELSATKKDRVNHC 82
>CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CRE-BPa)| Length = 508 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +3 Query: 270 HQAIPRPHPLPRPGQDPLAHHP 335 HQ +P HP P Q P AHHP Sbjct: 281 HQTLPPHHPYPHQHQHP-AHHP 301
>ACRO_RABIT (P48038) Acrosin precursor (EC 3.4.21.10) [Contains: Acrosin light| chain; Acrosin heavy chain] Length = 431 Score = 28.5 bits (62), Expect = 8.7 Identities = 11/18 (61%), Positives = 11/18 (61%) Frame = +3 Query: 282 PRPHPLPRPGQDPLAHHP 335 P PHP PRP Q P A P Sbjct: 335 PHPHPHPRPPQPPAAQAP 352
>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)| (Fragment) Length = 353 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +3 Query: 270 HQAIPRPHPLPRPGQDPLAHHP 335 HQ +P HP P Q P AHHP Sbjct: 126 HQTLPPHHPYPHQHQHP-AHHP 146
>RL13A_SPIOL (P82454) 60S ribosomal protein L13a (Fragment)| Length = 15 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/15 (86%), Positives = 14/15 (93%) Frame = +1 Query: 70 VSGSGVCAKRVVVDA 114 VSGSG+ AKRVVVDA Sbjct: 1 VSGSGIMAKRVVVDA 15
>ECT2_MOUSE (Q07139) ECT2 protein (Epithelial cell-transforming sequence 2| oncogene) Length = 738 Score = 28.5 bits (62), Expect = 8.7 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Frame = -1 Query: 257 RRKRRYFIFWRT--RPPDMQISSQRTTTTRCPLSSSLATIDARWPSMWWRASTTTRLAHT 84 ++ R F F +T R M +SS ++ R P SS + R S+T+ LA Sbjct: 660 KKVTRAFSFSKTPKRALRMALSSSHSSEGRSPPSSGKLAVS--------RLSSTSSLAGI 711 Query: 83 PEPDTISPLTWRRRRSY 33 P P +S ++ RRS+ Sbjct: 712 PSPSLVSLPSFFERRSH 728
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 28.5 bits (62), Expect = 8.7 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Frame = -1 Query: 224 TRPPDMQISSQRTTTTRCPLSSSLATID-ARWPSMWWRASTTTRLAHTPEPDTISPLT 54 T PP S TTTT P + + T PS +TT TP P T +P+T Sbjct: 1570 TTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPIT 1627 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,604,000 Number of Sequences: 219361 Number of extensions: 1080043 Number of successful extensions: 5983 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 4514 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5824 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
