ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast62a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GID2_ORYSA (Q7XAK4) F-box protein GID2 (Gibberellin-insensitive ... 32 0.74
2FBXW7_DROME (Q9VZF4) F-box/WD-repeat protein 7 (F-box and WD-40 ... 30 2.2
3PHLPP_DROME (Q9VJ07) Protein phosphatase PHLPP-like protein (EC ... 30 2.8
4FBXW7_HUMAN (Q969H0) F-box/WD-repeat protein 7 (F-box and WD-40 ... 28 8.2
5FBXW7_MOUSE (Q8VBV4) F-box/WD-repeat protein 7 (F-box and WD-40 ... 28 8.2
6FBX17_HUMAN (Q96EF6) F-box only protein 17 (F-box only protein 26) 28 8.2

>GID2_ORYSA (Q7XAK4) F-box protein GID2 (Gibberellin-insensitive dwarf protein|
           2) (Protein GIBBERELLIN INSENSITIVE DWARF2)
          Length = 212

 Score = 32.0 bits (71), Expect = 0.74
 Identities = 20/50 (40%), Positives = 26/50 (52%)
 Frame = +3

Query: 144 VGPDLSACVFARLHDPADLARAATVSRPWRRFVEGNGFLKKACVRKFPEL 293
           +G DL   V  R  +   LA AA VSR WR+  E     + ACVR++  L
Sbjct: 76  LGEDLVFEVLRRA-EARTLAAAACVSRGWRQLAEDERLWEAACVREWANL 124



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>FBXW7_DROME (Q9VZF4) F-box/WD-repeat protein 7 (F-box and WD-40 domain protein 7)|
            (Protein archipelago)
          Length = 1326

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 132  FLDLVGPDLSACVFARLHDPADLARAATVSRPWRRFVEGNGFLKKAC 272
            F+ L+  +L+  V + L +P DL RAA   R WR   + N   K+ C
Sbjct: 891  FISLLPRELALFVLSYL-EPKDLLRAAQTCRSWRFLCDDNLLWKEKC 936



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>PHLPP_DROME (Q9VJ07) Protein phosphatase PHLPP-like protein (EC 3.1.3.16)|
           (dPHLPP)
          Length = 954

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 105 KQQQGDPAAF--LDLVGPDLSACVFARLHDPADLARAATVSRPWRRFVEGNGFLKKACVR 278
           + +Q + AA   L L G  L+  +F  LH+ A L     +   + R     G L  ACVR
Sbjct: 247 RYEQNNHAALVNLSLAGNHLNDSIFEPLHNAAKLR---VLHLAYNRI----GVLPAACVR 299

Query: 279 KFPELAVL 302
            +PEL +L
Sbjct: 300 NWPELEIL 307



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>FBXW7_HUMAN (Q969H0) F-box/WD-repeat protein 7 (F-box and WD-40 domain protein|
           7) (F-box protein FBX30) (hCdc4) (Archipelago homolog)
           (hAgo) (SEL-10)
          Length = 707

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 132 FLDLVGPDLSACVFARLHDPADLARAATVSRPWRRFVEGNGFLKKAC 272
           F+ L+  +L+  V + L +P DL +AA   R WR   E N   ++ C
Sbjct: 280 FISLLPKELALYVLSFL-EPKDLLQAAQTCRYWRILAEDNLLWREKC 325



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>FBXW7_MOUSE (Q8VBV4) F-box/WD-repeat protein 7 (F-box and WD-40 domain protein|
           7) (F-box protein FBW7) (F-box protein Fbxw6)
           (F-box-WD40 repeat protein 6) (SEL-10)
          Length = 629

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 132 FLDLVGPDLSACVFARLHDPADLARAATVSRPWRRFVEGNGFLKKAC 272
           F+ L+  +L+  V + L +P DL +AA   R WR   E N   ++ C
Sbjct: 202 FISLLPKELALYVLSFL-EPKDLLQAAQTCRYWRILAEDNLLWREKC 247



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>FBX17_HUMAN (Q96EF6) F-box only protein 17 (F-box only protein 26)|
          Length = 278

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 120 DPAAFLDLVGPDLSACVFARLHDPADLARAATVSRPWRRFVEG 248
           DP+  LD + P+L   V + +   + + R   V R WR  V+G
Sbjct: 13  DPSLALDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDG 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.128    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,538,196
Number of Sequences: 219361
Number of extensions: 475793
Number of successful extensions: 761
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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