ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast62a01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104839.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F01, full insert sequence Length = 1335 Score = 83.8 bits (42), Expect = 5e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 144 gtcggccccgacctctccgcctgcgtcttcgcccgcctccacgaccccgccgacctcgcc 203 |||||||||||| |||||||| | ||||| | |||| |||||||||||||| ||| | Sbjct: 58 gtcggccccgacgcctccgcctccatcttccgctccctcgacgaccccgccgacatcgtc 117 Query: 204 cgcgccgccaccgtctcccgcccctggcgcagattcgt 241 ||||||||| ||||||||||| |||||||| ||||||| Sbjct: 118 cgcgccgccgccgtctcccgctcctggcgccgattcgt 155 Score = 52.0 bits (26), Expect = 0.002 Identities = 70/84 (83%), Gaps = 3/84 (3%) Strand = Plus / Plus Query: 370 acaggatctactcccacctctacggcgcgctcgtccccgacgccaggcccgccgttgact 429 |||||||||||||| ||||| |||||| |||||| || || || ||| || | |||| Sbjct: 308 acaggatctactcctacctcagcggcgccctcgtctccaac---agcccctccatggact 364 Query: 430 gcatcctgcactgcatcggcgcct 453 |||||||||| ||||||||||||| Sbjct: 365 gcatcctgcaatgcatcggcgcct 388
>dbj|AK066955.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091C10, full insert sequence Length = 1478 Score = 83.8 bits (42), Expect = 5e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 144 gtcggccccgacctctccgcctgcgtcttcgcccgcctccacgaccccgccgacctcgcc 203 |||||||||||| |||||||| | ||||| | |||| |||||||||||||| ||| | Sbjct: 179 gtcggccccgacgcctccgcctccatcttccgctccctcgacgaccccgccgacatcgtc 238 Query: 204 cgcgccgccaccgtctcccgcccctggcgcagattcgt 241 ||||||||| ||||||||||| |||||||| ||||||| Sbjct: 239 cgcgccgccgccgtctcccgctcctggcgccgattcgt 276 Score = 52.0 bits (26), Expect = 0.002 Identities = 70/84 (83%), Gaps = 3/84 (3%) Strand = Plus / Plus Query: 370 acaggatctactcccacctctacggcgcgctcgtccccgacgccaggcccgccgttgact 429 |||||||||||||| ||||| |||||| |||||| || || || ||| || | |||| Sbjct: 429 acaggatctactcctacctcagcggcgccctcgtctccaac---agcccctccatggact 485 Query: 430 gcatcctgcactgcatcggcgcct 453 |||||||||| ||||||||||||| Sbjct: 486 gcatcctgcaatgcatcggcgcct 509
>gb|AC134236.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0056G13, complete sequence Length = 148011 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 144 gtcggccccgacctctccgcctgcgtcttcgcccgcctccacgaccccgccgacctcgcc 203 |||||||||||| |||||||| | ||||| | |||| |||||||||||||| ||| | Sbjct: 81091 gtcggccccgacgcctccgcctccatcttccgctccctcgacgaccccgccgacatcgtc 81150 Query: 204 cgcgccgccaccgtctcccgcccctggcgcagattcg 240 ||||||||| ||||||||||| |||||||| |||||| Sbjct: 81151 cgcgccgccgccgtctcccgctcctggcgccgattcg 81187 Score = 52.0 bits (26), Expect = 0.002 Identities = 70/84 (83%), Gaps = 3/84 (3%) Strand = Plus / Plus Query: 370 acaggatctactcccacctctacggcgcgctcgtccccgacgccaggcccgccgttgact 429 |||||||||||||| ||||| |||||| |||||| || || || ||| || | |||| Sbjct: 81427 acaggatctactcctacctcagcggcgccctcgtctccaac---agcccctccatggact 81483 Query: 430 gcatcctgcactgcatcggcgcct 453 |||||||||| ||||||||||||| Sbjct: 81484 gcatcctgcaatgcatcggcgcct 81507
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 144 gtcggccccgacctctccgcctgcgtcttcgcccgcctccacgaccccgccgacctcgcc 203 |||||||||||| |||||||| | ||||| | |||| |||||||||||||| ||| | Sbjct: 925894 gtcggccccgacgcctccgcctccatcttccgctccctcgacgaccccgccgacatcgtc 925953 Query: 204 cgcgccgccaccgtctcccgcccctggcgcagattcg 240 ||||||||| ||||||||||| |||||||| |||||| Sbjct: 925954 cgcgccgccgccgtctcccgctcctggcgccgattcg 925990 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 187 accccgccgacctcgcccgcgccgccaccgtctcccgcccctggcgcagattcg 240 ||||||| || |||||||||||| || |||||||||| |||||||| |||||| Sbjct: 36078021 accccgctgatctcgcccgcgcctccgccgtctcccgttcctggcgccgattcg 36078074 Score = 52.0 bits (26), Expect = 0.002 Identities = 70/84 (83%), Gaps = 3/84 (3%) Strand = Plus / Plus Query: 370 acaggatctactcccacctctacggcgcgctcgtccccgacgccaggcccgccgttgact 429 |||||||||||||| ||||| |||||| |||||| || || || ||| || | |||| Sbjct: 926230 acaggatctactcctacctcagcggcgccctcgtctccaac---agcccctccatggact 926286 Query: 430 gcatcctgcactgcatcggcgcct 453 |||||||||| ||||||||||||| Sbjct: 926287 gcatcctgcaatgcatcggcgcct 926310 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 cgccgccaccgtctcccgccc 226 ||||||||||||||||||||| Sbjct: 14115158 cgccgccaccgtctcccgccc 14115138 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 ccccgccgacctcgcccgcgccgc 211 |||||||||||||||| ||||||| Sbjct: 1191447 ccccgccgacctcgccggcgccgc 1191424
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 144 gtcggccccgacctctccgcctgcgtcttcgcccgcctccacgaccccgccgacctcgcc 203 |||||||||||| |||||||| | ||||| | |||| |||||||||||||| ||| | Sbjct: 925892 gtcggccccgacgcctccgcctccatcttccgctccctcgacgaccccgccgacatcgtc 925951 Query: 204 cgcgccgccaccgtctcccgcccctggcgcagattcg 240 ||||||||| ||||||||||| |||||||| |||||| Sbjct: 925952 cgcgccgccgccgtctcccgctcctggcgccgattcg 925988 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 187 accccgccgacctcgcccgcgccgccaccgtctcccgcccctggcgcagattcg 240 ||||||| || |||||||||||| || |||||||||| |||||||| |||||| Sbjct: 36168095 accccgctgatctcgcccgcgcctccgccgtctcccgttcctggcgccgattcg 36168148 Score = 52.0 bits (26), Expect = 0.002 Identities = 70/84 (83%), Gaps = 3/84 (3%) Strand = Plus / Plus Query: 370 acaggatctactcccacctctacggcgcgctcgtccccgacgccaggcccgccgttgact 429 |||||||||||||| ||||| |||||| |||||| || || || ||| || | |||| Sbjct: 926228 acaggatctactcctacctcagcggcgccctcgtctccaac---agcccctccatggact 926284 Query: 430 gcatcctgcactgcatcggcgcct 453 |||||||||| ||||||||||||| Sbjct: 926285 gcatcctgcaatgcatcggcgcct 926308 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 cgccgccaccgtctcccgccc 226 ||||||||||||||||||||| Sbjct: 14110133 cgccgccaccgtctcccgccc 14110113 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 ccccgccgacctcgcccgcgccgc 211 |||||||||||||||| ||||||| Sbjct: 1191445 ccccgccgacctcgccggcgccgc 1191422
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 188 ccccgccgacctcgcccgcgccgccaccg 216 ||||||||||||||||||||||||||||| Sbjct: 22054284 ccccgccgacctcgcccgcgccgccaccg 22054312 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 ccccgccgacctcgcccgcgc 208 ||||||||||||||||||||| Sbjct: 22048463 ccccgccgacctcgcccgcgc 22048483
>dbj|AP005125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0058I18 Length = 151453 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 188 ccccgccgacctcgcccgcgccgccaccg 216 ||||||||||||||||||||||||||||| Sbjct: 7940 ccccgccgacctcgcccgcgccgccaccg 7968 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 ccccgccgacctcgcccgcgc 208 ||||||||||||||||||||| Sbjct: 2119 ccccgccgacctcgcccgcgc 2139
>dbj|AP004261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0013G11 Length = 151405 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 188 ccccgccgacctcgcccgcgccgccaccg 216 ||||||||||||||||||||||||||||| Sbjct: 146328 ccccgccgacctcgcccgcgccgccaccg 146356 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 ccccgccgacctcgcccgcgc 208 ||||||||||||||||||||| Sbjct: 140507 ccccgccgacctcgcccgcgc 140527
>dbj|AK105566.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-C08, full insert sequence Length = 1464 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 188 ccccgccgacctcgcccgcgccgccaccg 216 ||||||||||||||||||||||||||||| Sbjct: 175 ccccgccgacctcgcccgcgccgccaccg 203
>ref|XM_470517.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1421 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 187 accccgccgacctcgcccgcgccgccaccgtctcccgcccctggcgcagattcgt 241 ||||||| || |||||||||||| || |||||||||| |||||||| ||||||| Sbjct: 164 accccgctgatctcgcccgcgcctccgccgtctcccgttcctggcgccgattcgt 218
>dbj|AK109388.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E04, full insert sequence Length = 1490 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 187 accccgccgacctcgcccgcgccgccaccgtctcccgcccctggcgcagattcgt 241 ||||||| || |||||||||||| || |||||||||| |||||||| ||||||| Sbjct: 157 accccgctgatctcgcccgcgcctccgccgtctcccgttcctggcgccgattcgt 211
>dbj|AK068434.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154L15, full insert sequence Length = 1412 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 187 accccgccgacctcgcccgcgccgccaccgtctcccgcccctggcgcagattcgt 241 ||||||| || |||||||||||| || |||||||||| |||||||| ||||||| Sbjct: 165 accccgctgatctcgcccgcgcctccgccgtctcccgttcctggcgccgattcgt 219
>ref|NM_195194.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAb0022I16.8), mRNA Length = 975 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 192 gccgacctcgcccgcgccgccaccgtctcccgcccctggcgc 233 |||| |||||| |||||||||||||||| ||||| ||||||| Sbjct: 67 gccgccctcgcgcgcgccgccaccgtctgccgccgctggcgc 108
>gb|AC091238.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0022I16, complete sequence Length = 127068 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 192 gccgacctcgcccgcgccgccaccgtctcccgcccctggcgc 233 |||| |||||| |||||||||||||||| ||||| ||||||| Sbjct: 125537 gccgccctcgcgcgcgccgccaccgtctgccgccgctggcgc 125496
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence Length = 164179 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 187 accccgccgacctcgcccgcgccgccaccgtctcccgcccctggcgcagattcg 240 ||||||| || |||||||||||| || |||||||||| |||||||| |||||| Sbjct: 139532 accccgctgatctcgcccgcgcctccgccgtctcccgttcctggcgccgattcg 139585
>gb|AC122146.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0022I16, complete sequence Length = 126133 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 192 gccgacctcgcccgcgccgccaccgtctcccgcccctggcgc 233 |||| |||||| |||||||||||||||| ||||| ||||||| Sbjct: 58469 gccgccctcgcgcgcgccgccaccgtctgccgccgctggcgc 58428
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 192 gccgacctcgcccgcgccgccaccgtctcccgcccctggcgc 233 |||| |||||| |||||||||||||||| ||||| ||||||| Sbjct: 5362339 gccgccctcgcgcgcgccgccaccgtctgccgccgctggcgc 5362298 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 176 ccgcctccacgaccccgccgacctcgcccgcgccgcc 212 ||||||| ||||| |||||||||||||||||||||| Sbjct: 2171237 ccgcctcaccgacctcgccgacctcgcccgcgccgcc 2171273 Score = 46.1 bits (23), Expect = 0.099 Identities = 29/31 (93%) Strand = Plus / Minus Query: 179 cctccacgaccccgccgacctcgcccgcgcc 209 |||| ||||||||| |||||||||||||||| Sbjct: 2200164 cctcgacgaccccgtcgacctcgcccgcgcc 2200134 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 176 ccgcctccacgaccccgccgacctcgcccgcgccgcc 212 ||||||| |||||| ||||| ||||||||||||||| Sbjct: 2175746 ccgcctcgacgacctggccgatctcgcccgcgccgcc 2175782
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 192 gccgacctcgcccgcgccgccaccgtctcccgcccctggcgc 233 |||| |||||| |||||||||||||||| ||||| ||||||| Sbjct: 5363126 gccgccctcgcgcgcgccgccaccgtctgccgccgctggcgc 5363085 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 176 ccgcctccacgaccccgccgacctcgcccgcgccgcc 212 ||||||| ||||| |||||||||||||||||||||| Sbjct: 2171188 ccgcctcaccgacctcgccgacctcgcccgcgccgcc 2171224 Score = 46.1 bits (23), Expect = 0.099 Identities = 29/31 (93%) Strand = Plus / Minus Query: 179 cctccacgaccccgccgacctcgcccgcgcc 209 |||| ||||||||| |||||||||||||||| Sbjct: 2200115 cctcgacgaccccgtcgacctcgcccgcgcc 2200085 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 176 ccgcctccacgaccccgccgacctcgcccgcgccgcc 212 ||||||| |||||| ||||| ||||||||||||||| Sbjct: 2175697 ccgcctcgacgacctggccgatctcgcccgcgccgcc 2175733
>gb|AC079843.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0013J21, complete sequence Length = 155290 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 176 ccgcctccacgaccccgccgacctcgcccgcgccgcc 212 ||||||| ||||| |||||||||||||||||||||| Sbjct: 149377 ccgcctcaccgacctcgccgacctcgcccgcgccgcc 149413 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 176 ccgcctccacgaccccgccgacctcgcccgcgccgcc 212 ||||||| |||||| ||||| ||||||||||||||| Sbjct: 153886 ccgcctcgacgacctggccgatctcgcccgcgccgcc 153922
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 176 ccgcctccacgaccccgccgacctcgcccgcgccgcc 212 ||||||| ||||| |||||||||||||||||||||| Sbjct: 2171237 ccgcctcaccgacctcgccgacctcgcccgcgccgcc 2171273 Score = 46.1 bits (23), Expect = 0.099 Identities = 29/31 (93%) Strand = Plus / Minus Query: 179 cctccacgaccccgccgacctcgcccgcgcc 209 |||| ||||||||| |||||||||||||||| Sbjct: 2200164 cctcgacgaccccgtcgacctcgcccgcgcc 2200134 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 176 ccgcctccacgaccccgccgacctcgcccgcgccgcc 212 ||||||| |||||| ||||| ||||||||||||||| Sbjct: 2175746 ccgcctcgacgacctggccgatctcgcccgcgccgcc 2175782
>dbj|AK069878.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035G04, full insert sequence Length = 1646 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 176 ccgcctccacgaccccgccgacctcgcccgcgccgcc 212 ||||||| ||||| |||||||||||||||||||||| Sbjct: 174 ccgcctcaccgacctcgccgacctcgcccgcgccgcc 210
>gb|AC074283.3| Oryza sativa chromosome 10 clone OSJNBa0087H07, complete sequence Length = 156654 Score = 46.1 bits (23), Expect = 0.099 Identities = 29/31 (93%) Strand = Plus / Minus Query: 179 cctccacgaccccgccgacctcgcccgcgcc 209 |||| ||||||||| |||||||||||||||| Sbjct: 25818 cctcgacgaccccgtcgacctcgcccgcgcc 25788 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 176 ccgcctccacgaccccgccgacctcgcccgcgccgcc 212 ||||||| |||||| ||||| ||||||||||||||| Sbjct: 1400 ccgcctcgacgacctggccgatctcgcccgcgccgcc 1436
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 46.1 bits (23), Expect = 0.099 Identities = 26/27 (96%) Strand = Plus / Plus Query: 132 ttcctcgacctcgtcggccccgacctc 158 ||||||||||| ||||||||||||||| Sbjct: 133066 ttcctcgacctggtcggccccgacctc 133092
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Minus Query: 287 ggagctggccgtgctcgcgggcg 309 ||||||||||||||||||||||| Sbjct: 3590399 ggagctggccgtgctcgcgggcg 3590377 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 gtcttcgcccgcctccacga 187 |||||||||||||||||||| Sbjct: 1670120 gtcttcgcccgcctccacga 1670101
>dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic gene cluster Length = 104326 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 287 ggagctggccgtgctcgcgggcg 309 ||||||||||||||||||||||| Sbjct: 47406 ggagctggccgtgctcgcgggcg 47428
>emb|AL593853.11| Mouse DNA sequence from clone RP23-199A2 on chromosome 11 Contains the 5' end of a novel gene, the Sfrs1 gene for arginine/serine-rich splicing factor 1 (ASF/SF2), the Vezf1 gene for vascular endothelial zinc finger 1, a novel gene (2210416O15Rik), the gene for the likely ortholog of H. sapiens CUE domain containing 1 CUEDC1 (C330016O16Rik), the Mrps23 gene for mitochondrial ribosomal protein S23 and two CpG islands, complete sequence Length = 223276 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 16 gagcggggaggagagcagaggg 37 |||||||||||||||||||||| Sbjct: 117254 gagcggggaggagagcagaggg 117275
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 191 cgccgacctcgcccgcgccgcc 212 |||||||||||||||||||||| Sbjct: 4619933 cgccgacctcgcccgcgccgcc 4619912
>dbj|AP006620.1| Nocardia farcinica IFM 10152 plasmid pNF2 DNA, complete sequence Length = 87093 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 184 acgaccccgccgacctcgcccgcgccgcca 213 |||||||||||||||||| || |||||||| Sbjct: 27105 acgaccccgccgacctcgacctcgccgcca 27134
>ref|NM_194764.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0013J21.23), mRNA Length = 1233 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 176 ccgcctccacgaccccgccgacctcgcccgcgccgcc 212 ||||||| |||||| ||||| ||||||||||||||| Sbjct: 87 ccgcctcgacgacctggccgatctcgcccgcgccgcc 123
>ref|XM_465291.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4275 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 ctcgacctcgtcggccccgac 155 ||||||||||||||||||||| Sbjct: 382 ctcgacctcgtcggccccgac 402
>gb|AC135794.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0084H09, complete sequence Length = 130151 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 167 cgtcttcgcccgcctccacgaccccgccgacctcgcccgcgccgccaccgtct 219 ||||||| |||||||| |||||| | ||||||||||||| | ||||||||| Sbjct: 92296 cgtcttctcccgcctcgacgaccacttcgacctcgcccgctgctccaccgtct 92244
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 321 cgcagatcgcccgccccatcc 341 ||||||||||||||||||||| Sbjct: 2278844 cgcagatcgcccgccccatcc 2278864
>gb|AC137597.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0022F22, from chromosome 3, complete sequence Length = 144268 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 cgccgccaccgtctcccgccc 226 ||||||||||||||||||||| Sbjct: 124837 cgccgccaccgtctcccgccc 124817
>emb|AL023775.1|HS497J21 Human DNA sequence from clone RP3-497J21 on chromosome 6q26-27 Contains part of a variant of the RPS6KA2 gene for ribosomal protein S6 kinase, 90kD, polypeptide 2 (RSK3) and a IGF-II mRNA-binding protein 3 (KOC1) pseudogene, complete sequence Length = 129432 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 357 gaggccaacgagcacaggatctactccca 385 |||||||||||| ||||||||||||||| Sbjct: 48651 gaggccaacgagggcaggatctactccca 48623
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 167 cgtcttcgcccgcctccacgaccccgccgacctcgcccgcgccgccaccgtct 219 ||||||| |||||||| |||||| | ||||||||||||| | ||||||||| Sbjct: 4120634 cgtcttctcccgcctcgacgaccacttcgacctcgcccgctgctccaccgtct 4120582
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 90 gccatggccatgtccaagcagcagc 114 |||||||||||| |||||||||||| Sbjct: 188161 gccatggccatggccaagcagcagc 188137 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 cctcgtcggccccgacctctccgc 163 ||||||||||||||| |||||||| Sbjct: 25862456 cctcgtcggccccgagctctccgc 25862433
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 ccccgccgacctcgcccgcgc 208 ||||||||||||||||||||| Sbjct: 13609812 ccccgccgacctcgcccgcgc 13609792
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 ctcgacctcgtcggccccgac 155 ||||||||||||||||||||| Sbjct: 13144444 ctcgacctcgtcggccccgac 13144464
>dbj|AP005645.1| Streptomyces avermitilis MA-4680 plasmid SAP1 DNA, complete sequence Length = 94287 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 187 accccgccgacctcgcccgcgccgccacc 215 ||||||||| |||| |||||||||||||| Sbjct: 34116 accccgccgccctcacccgcgccgccacc 34088
>dbj|AP004679.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021N09 Length = 156565 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 ccccgccgacctcgcccgcgc 208 ||||||||||||||||||||| Sbjct: 17145 ccccgccgacctcgcccgcgc 17125
>dbj|AP003572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0459H02 Length = 168230 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 ccccgccgacctcgcccgcgc 208 ||||||||||||||||||||| Sbjct: 138302 ccccgccgacctcgcccgcgc 138282
>dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0015C07 Length = 149079 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 90 gccatggccatgtccaagcagcagc 114 |||||||||||| |||||||||||| Sbjct: 103496 gccatggccatggccaagcagcagc 103472
>dbj|AP005778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0042G06 Length = 123571 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 ctcgacctcgtcggccccgac 155 ||||||||||||||||||||| Sbjct: 14474 ctcgacctcgtcggccccgac 14494
>dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0476C12 Length = 157570 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 ctcgacctcgtcggccccgac 155 ||||||||||||||||||||| Sbjct: 121021 ctcgacctcgtcggccccgac 121041
>dbj|AK112089.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-F05, full insert sequence Length = 1833 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 167 cgtcttcgcccgcctccacgaccccgccgacctcgcccgcgccgccaccgtct 219 ||||||| |||||||| |||||| | ||||||||||||| | ||||||||| Sbjct: 244 cgtcttctcccgcctcgacgaccacttcgacctcgcccgctgctccaccgtct 296
>dbj|AK099992.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132B13, full insert sequence Length = 2410 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 176 ccgcctccacgaccccgccgacctcgcccgcgccgcc 212 ||||||| |||||| ||||| ||||||||||||||| Sbjct: 180 ccgcctcgacgacctggccgatctcgcccgcgccgcc 216
>dbj|AK071294.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084I19, full insert sequence Length = 2013 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 ccccgccgacctcgcccgcgc 208 ||||||||||||||||||||| Sbjct: 127 ccccgccgacctcgcccgcgc 147
>dbj|AK070940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023066I09, full insert sequence Length = 2522 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 ccccgccgacctcgcccgcgc 208 ||||||||||||||||||||| Sbjct: 207 ccccgccgacctcgcccgcgc 227
>dbj|AK069991.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038N21, full insert sequence Length = 1560 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 ccccgccgacctcgcccgcgc 208 ||||||||||||||||||||| Sbjct: 127 ccccgccgacctcgcccgcgc 147
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 167 cgtcttcgcccgcctccacgaccccgccgacctcgcccgcgccgccaccgtct 219 ||||||| |||||||| |||||| | ||||||||||||| | ||||||||| Sbjct: 4129328 cgtcttctcccgcctcgacgaccacttcgacctcgcccgctgctccaccgtct 4129276
>gb|AY632421.1| Streptomyces viridochromogenes PTT biosynthetic gene Length = 40241 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 ccgccgacctcgcccgcgcc 209 |||||||||||||||||||| Sbjct: 4060 ccgccgacctcgcccgcgcc 4041
>ref|XM_483367.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1760 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 cctcgtcggccccgacctctccgc 163 ||||||||||||||| |||||||| Sbjct: 580 cctcgtcggccccgagctctccgc 603
>ref|XM_507296.1| PREDICTED Oryza sativa (japonica cultivar-group), P0689E12.37 mRNA Length = 1923 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 cctcgtcggccccgacctctccgc 163 ||||||||||||||| |||||||| Sbjct: 569 cctcgtcggccccgagctctccgc 592
>ref|NM_187578.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1821 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 ccccgccgacctcgcccgcgccgc 211 |||||||||||||||| ||||||| Sbjct: 36 ccccgccgacctcgccggcgccgc 13
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 ggccgtgctcgcgggcgcgg 312 |||||||||||||||||||| Sbjct: 3481048 ggccgtgctcgcgggcgcgg 3481029
>gb|AY596296.1| Haloarcula marismortui ATCC 43049 plasmid pNG700, complete sequence Length = 410554 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 385 acctctacggcgcgctcgtccccg 408 ||||| |||||||||||||||||| Sbjct: 250457 acctcgacggcgcgctcgtccccg 250434
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 cgccgtgcgcgcgcggcggcggca 79 ||||| |||||||||||||||||| Sbjct: 3478168 cgccgcgcgcgcgcggcggcggca 3478145
>ref|XM_419126.1| PREDICTED: Gallus gallus phosphoprotein phosphatase (LOC396409), mRNA Length = 2079 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gtgcgcgcgcggcggcggca 79 |||||||||||||||||||| Sbjct: 38 gtgcgcgcgcggcggcggca 57
>gb|BC001718.1| Homo sapiens v-crk sarcoma virus CT10 oncogene homolog (avian), transcript variant II, mRNA (cDNA clone MGC:3138 IMAGE:3353237), complete cds Length = 2382 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gcgcgcgcggcggcggcacc 81 |||||||||||||||||||| Sbjct: 58 gcgcgcgcggcggcggcacc 77
>gb|BC008506.1| Homo sapiens v-crk sarcoma virus CT10 oncogene homolog (avian), transcript variant II, mRNA (cDNA clone MGC:5481 IMAGE:3452137), complete cds Length = 2431 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gcgcgcgcggcggcggcacc 81 |||||||||||||||||||| Sbjct: 89 gcgcgcgcggcggcggcacc 108
>ref|NM_005206.3| Homo sapiens v-crk sarcoma virus CT10 oncogene homolog (avian) (CRK), transcript variant I, mRNA Length = 2245 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gcgcgcgcggcggcggcacc 81 |||||||||||||||||||| Sbjct: 89 gcgcgcgcggcggcggcacc 108
>ref|NM_016823.2| Homo sapiens v-crk sarcoma virus CT10 oncogene homolog (avian) (CRK), transcript variant II, mRNA Length = 2415 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gcgcgcgcggcggcggcacc 81 |||||||||||||||||||| Sbjct: 89 gcgcgcgcggcggcggcacc 108
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 cgtgcgcgcgcggcggcggc 78 |||||||||||||||||||| Sbjct: 88504 cgtgcgcgcgcggcggcggc 88523
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 tcgccgtgcgcgcgcggcggcggc 78 |||||| ||||||||||||||||| Sbjct: 2373749 tcgccgagcgcgcgcggcggcggc 2373726 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 cgccgtgcgcgcgcggcggcggca 79 ||||| |||||||||||||||||| Sbjct: 514403 cgccgcgcgcgcgcggcggcggca 514380
>gb|AE009049.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 75 of 256 of the complete sequence Length = 11531 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 ccgccgacctcgcccgcgcc 209 |||||||||||||||||||| Sbjct: 11175 ccgccgacctcgcccgcgcc 11194
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 cgggcgcggtggaggtgcgc 323 |||||||||||||||||||| Sbjct: 277406 cgggcgcggtggaggtgcgc 277425
>ref|XM_659309.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6797.2), mRNA Length = 321 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 ccgccgacctcgcccgcgccgcca 213 |||||||||||||| ||||||||| Sbjct: 53 ccgccgacctcgccggcgccgcca 76
>gb|AC182748.2| Mus musculus BAC clone RP23-348N13 from chromosome 17, complete sequence Length = 214515 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 gagcacaggatctactccca 385 |||||||||||||||||||| Sbjct: 102343 gagcacaggatctactccca 102362
>gb|AC125224.3| Mus musculus BAC clone RP23-33N8 from 17, complete sequence Length = 195968 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 gagcacaggatctactccca 385 |||||||||||||||||||| Sbjct: 149704 gagcacaggatctactccca 149685
>emb|X65195.2|SVPTT Streptomyces viridochromogenes strain Tue494 phosphinothricin tripeptide biosynthetic gene cluster: ORFB1, ORFB2, ORF1, phsB gene, ORFM, phsC gene, pmi gene, adhP gene, ORF3, pgdP gene, ppm gene, ppd gene, ORFx, pgmP gene, cpps gene, cppm gene, aldP gene, pmet gene, pms gene, phsA gene, pat gene, dea gene, the1 gene, the2 gene, trs gene, prpA gene, ORFE1, ORFE2 and ORFE3 (partial) Length = 37823 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 ccgccgacctcgcccgcgcc 209 |||||||||||||||||||| Sbjct: 5676 ccgccgacctcgcccgcgcc 5657
>emb|Y07848.1|HSEWSGAR Homo sapiens EWS, gar22, rrp22 and bam22 genes Length = 80141 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 agcggggaggagagcagagg 36 |||||||||||||||||||| Sbjct: 64446 agcggggaggagagcagagg 64427
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 gcgtcttcgcccgcctccacgacc 189 |||||||||||||||||| ||||| Sbjct: 47448 gcgtcttcgcccgcctcctcgacc 47471
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 cctcgccgtgcgcgcgcggc 72 |||||||||||||||||||| Sbjct: 105014 cctcgccgtgcgcgcgcggc 104995
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 cctcgccgtgcgcgcgcggc 72 |||||||||||||||||||| Sbjct: 283225 cctcgccgtgcgcgcgcggc 283206
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 cgtgcgcgcgcggcggcggc 78 |||||||||||||||||||| Sbjct: 1484039 cgtgcgcgcgcggcggcggc 1484058
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 tcgccgtgcgcgcgcggcggcggc 78 |||||| ||||||||||||||||| Sbjct: 2010816 tcgccgagcgcgcgcggcggcggc 2010839 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 cgccgtgcgcgcgcggcggcggca 79 ||||| |||||||||||||||||| Sbjct: 323024 cgccgcgcgcgcgcggcggcggca 323001
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 cccgcgccgccaccgtctcc 221 |||||||||||||||||||| Sbjct: 60328 cccgcgccgccaccgtctcc 60347
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 ggccgtgctcgcgggcgcgg 312 |||||||||||||||||||| Sbjct: 155072 ggccgtgctcgcgggcgcgg 155053
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 ccccgccgacctcgcccgcg 207 |||||||||||||||||||| Sbjct: 43537 ccccgccgacctcgcccgcg 43518
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 cctctacggcgcgctcgtcc 405 |||||||||||||||||||| Sbjct: 335575 cctctacggcgcgctcgtcc 335556
>gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08, complete sequence Length = 100986 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 ccccgccgacctcgcccgcgccgc 211 |||||||||||||||| ||||||| Sbjct: 95151 ccccgccgacctcgccggcgccgc 95128
>gb|AE005920.1| Caulobacter crescentus CB15 section 246 of 359 of the complete genome Length = 10062 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 cagcagcagggggaccccgc 127 |||||||||||||||||||| Sbjct: 1335 cagcagcagggggaccccgc 1316
>gb|AC100748.2| Homo sapiens chromosome 17, clone CTD-2231E3, complete sequence Length = 133544 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gcgcgcgcggcggcggcacc 81 |||||||||||||||||||| Sbjct: 113811 gcgcgcgcggcggcggcacc 113830
>emb|CR600568.1| full-length cDNA clone CS0DI069YF14 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 2297 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gcgcgcgcggcggcggcacc 81 |||||||||||||||||||| Sbjct: 34 gcgcgcgcggcggcggcacc 53
>gb|AE012083.1| Xanthomonas axonopodis pv. citri str. 306, section 461 of 469 of the complete genome Length = 10370 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 cgcgcgcggcggcggcaccacacc 86 ||||||||||| |||||||||||| Sbjct: 163 cgcgcgcggcgccggcaccacacc 140
>dbj|AB211358.1| Burkholderia gladioli benA, benB, benC, benD genes for alpha subunit of hydroxylase component of benzoate 1,2-dioxygenase, beta subunit of hydroxylase component of benzoate 1,2-dioxygenase, electron transfer component of benzoate 1,2-dioxygenase, cis-diol dehydrogenase, complete and partial cds Length = 4053 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cgcgcgcggcggcggcacca 82 |||||||||||||||||||| Sbjct: 3914 cgcgcgcggcggcggcacca 3933
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 ccgccgacctcgcccgcgcc 209 |||||||||||||||||||| Sbjct: 828319 ccgccgacctcgcccgcgcc 828338
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gccgacctcgcccgcgccgc 211 |||||||||||||||||||| Sbjct: 3440748 gccgacctcgcccgcgccgc 3440767 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 gtcttcgcccgcctccacga 187 |||||||||||||||||||| Sbjct: 2889477 gtcttcgcccgcctccacga 2889496
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 ccgccgacctcgcccgcgccgcca 213 |||||||| ||||||||||||||| Sbjct: 4074751 ccgccgacatcgcccgcgccgcca 4074728
>gb|AC002059.3| Homo sapiens Chromosome 22q12 PAC Clone p704f1059q13 In Meningioma Deletion Region, complete sequence Length = 173029 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 agcggggaggagagcagagg 36 |||||||||||||||||||| Sbjct: 34585 agcggggaggagagcagagg 34566
>gb|AC000026.3| Homo sapiens Chromosome 22q12 BAC Clone 58b8 In Meningioma Deletion Region, complete sequence Length = 126312 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 agcggggaggagagcagagg 36 |||||||||||||||||||| Sbjct: 42665 agcggggaggagagcagagg 42646
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.1 Identities = 41/48 (85%) Strand = Plus / Minus Query: 184 acgaccccgccgacctcgcccgcgccgccaccgtctcccgcccctggc 231 ||||||||||||||||| |||| |||| |||||| |||| |||||| Sbjct: 25724732 acgaccccgccgacctcctccgctgcgccgccgtctgccgctcctggc 25724685 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 cccgccgacctcgcccgcgccgcc 212 |||||||| ||||||||||||||| Sbjct: 24110976 cccgccgatctcgcccgcgccgcc 24110953
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 cccgccgacctcgcccgcgccgcc 212 |||||||||| ||||||||||||| Sbjct: 4358341 cccgccgaccgcgcccgcgccgcc 4358364
>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1003_A09 Length = 150755 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 cctcgtcggccccgacctctccgc 163 ||||||||||||||| |||||||| Sbjct: 48243 cctcgtcggccccgagctctccgc 48220
>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0689E12 Length = 147516 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 cctcgtcggccccgacctctccgc 163 ||||||||||||||| |||||||| Sbjct: 134667 cctcgtcggccccgagctctccgc 134644
>dbj|AK119371.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-H10, full insert sequence Length = 3192 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 cctcgtcggccccgacctctccgc 163 ||||||||||||||| |||||||| Sbjct: 580 cctcgtcggccccgagctctccgc 603
>dbj|AK102428.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093G21, full insert sequence Length = 1760 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 cctcgtcggccccgacctctccgc 163 ||||||||||||||| |||||||| Sbjct: 580 cctcgtcggccccgagctctccgc 603
>dbj|AK101458.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040C13, full insert sequence Length = 2343 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 ccccgccgacctcgcccgcgccgc 211 |||||||||||||||| ||||||| Sbjct: 83 ccccgccgacctcgccggcgccgc 60
>gb|BC009837.1| Homo sapiens v-crk sarcoma virus CT10 oncogene homolog (avian), transcript variant I, mRNA (cDNA clone MGC:15147 IMAGE:4040536), complete cds Length = 2229 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gcgcgcgcggcggcggcacc 81 |||||||||||||||||||| Sbjct: 71 gcgcgcgcggcggcggcacc 90
>dbj|AK064309.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-B11, full insert sequence Length = 1923 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 cctcgtcggccccgacctctccgc 163 ||||||||||||||| |||||||| Sbjct: 569 cctcgtcggccccgagctctccgc 592
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.1 Identities = 41/48 (85%) Strand = Plus / Minus Query: 184 acgaccccgccgacctcgcccgcgccgccaccgtctcccgcccctggc 231 ||||||||||||||||| |||| |||| |||||| |||| |||||| Sbjct: 25652908 acgaccccgccgacctcctccgctgcgccgccgtctgccgctcctggc 25652861 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 cccgccgacctcgcccgcgccgcc 212 |||||||| ||||||||||||||| Sbjct: 24039182 cccgccgatctcgcccgcgccgcc 24039159
>emb|AL772418.4|CNS08C9W Oryza sativa chromosome 12, . Partial sequence from BAC OJ1473_A04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 32463 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 cccgccgacctcgcccgcgccgcc 212 |||||||| ||||||||||||||| Sbjct: 26050 cccgccgatctcgcccgcgccgcc 26027
>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 167131 Score = 40.1 bits (20), Expect = 6.1 Identities = 41/48 (85%) Strand = Plus / Minus Query: 184 acgaccccgccgacctcgcccgcgccgccaccgtctcccgcccctggc 231 ||||||||||||||||| |||| |||| |||||| |||| |||||| Sbjct: 91970 acgaccccgccgacctcctccgctgcgccgccgtctgccgctcctggc 91923
>gb|AC154443.2| Mus musculus BAC clone RP24-178N23 from chromosome 17, complete sequence Length = 174220 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 gagcacaggatctactccca 385 |||||||||||||||||||| Sbjct: 153344 gagcacaggatctactccca 153363
>dbj|D10656.1|HUMCRK Human mRNA for CRK-II, complete cds Length = 1553 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gcgcgcgcggcggcggcacc 81 |||||||||||||||||||| Sbjct: 61 gcgcgcgcggcggcggcacc 80 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,915,384 Number of Sequences: 3902068 Number of extensions: 3915384 Number of successful extensions: 89176 Number of sequences better than 10.0: 105 Number of HSP's better than 10.0 without gapping: 114 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82601 Number of HSP's gapped (non-prelim): 6575 length of query: 453 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 431 effective length of database: 17,147,199,772 effective search space: 7390443101732 effective search space used: 7390443101732 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
