ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast61h07 |
|---|---|
| Clone Library Name | barley_pub |
>U2508_MOUSE (Q91YQ7) Protein UNQ2508/PRO5996 homolog| Length = 393 Score = 66.2 bits (160), Expect = 2e-11 Identities = 34/124 (27%), Positives = 67/124 (54%), Gaps = 5/124 (4%) Frame = +3 Query: 6 ALSKYLKVLEKSFNTDV-----SKAYRNVDFEDSTVNKIIANHFYRQGLFDLGDSFVHEC 170 ++S+ K ++++F++++ + + + + + I H Y+QG+ + + E Sbjct: 85 SVSRVGKAIDRNFDSEICGVVSDAVWDSREKQQQILQMAIVEHLYQQGMLSVAEELCQES 144 Query: 171 GESDETYLKLPFQEMYGILEAMKARNLEPALTWAANNHDKLLQNSSMLELKLHSLQSVEI 350 + + K PF E+ ILEA+ ++L PAL WA ++ +LL+ +S LE KLH L + + Sbjct: 145 TLNVDLDFKQPFLELNRILEALHEQDLGPALEWAVSHRQRLLELNSSLEFKLHRLHFIRL 204 Query: 351 LTKG 362 L G Sbjct: 205 LAGG 208
>U2508_HUMAN (Q96G75) Protein UNQ2508/PRO5996| Length = 393 Score = 65.9 bits (159), Expect = 2e-11 Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 5/124 (4%) Frame = +3 Query: 6 ALSKYLKVLEKSFNTDVSKAYRNV-----DFEDSTVNKIIANHFYRQGLFDLGDSFVHEC 170 ++S+ K ++++F++++ + + + + I H Y+QG+ + + E Sbjct: 85 SVSRVGKAIDRNFDSEICGVVSDAVWDAREQQQQILQMAIVEHLYQQGMLSVAEELCQES 144 Query: 171 GESDETYLKLPFQEMYGILEAMKARNLEPALTWAANNHDKLLQNSSMLELKLHSLQSVEI 350 + + K PF E+ ILEA+ ++L PAL WA ++ +LL+ +S LE KLH L + + Sbjct: 145 TLNVDLDFKQPFLELNRILEALHEQDLGPALEWAVSHRQRLLELNSSLEFKLHRLHFIRL 204 Query: 351 LTKG 362 L G Sbjct: 205 LAGG 208
>NRIP1_MOUSE (Q8CBD1) Nuclear receptor-interacting protein 1 (Nuclear factor| RIP140) (Receptor-interacting protein 140) Length = 1161 Score = 32.3 bits (72), Expect = 0.28 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Frame = +3 Query: 90 STVNKIIANHFYRQGLFDLGDSFVHECGESDETYLKLPFQEMYGILEAMKARNLEPALTW 269 + +NK A H F+L S C + T +Q G+L KAR L+ + W Sbjct: 35 TAINKKSAGHKEEDQNFNLSGSAFPSCQSNGPTVSTQTYQGS-GMLHLKKARLLQSSEDW 93 Query: 270 AANNHDKLLQNSSMLELKLHSLQS--VEILTKGRRD 371 A +L + L +K +L + V+ + KG++D Sbjct: 94 NAAKRKRLSDSIVNLNVKKEALLAGMVDSVPKGKQD 129
>YIJ7_YEAST (P40492) Hypothetical 59.9 kDa protein in SGA1-KTR7 intergenic| region Length = 516 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +3 Query: 243 RNLEPALTWAANNHDKLLQNSSMLELKLHSLQSVEILTKGRRDDA 377 RNL P ++W N L + SS+LE + + +E+L DA Sbjct: 202 RNLLPLISWINENKKTLTKKSSILEFQARLQEYIELLKVDNYTDA 246
>RUMA_NITMU (Q2Y6W3) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)| (23S rRNA(M-5-U1939)-methyltransferase) Length = 439 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/69 (21%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Frame = +3 Query: 111 ANHFYRQGLFDLGDSFVHECGESDETYLKLPFQEMYGILEAMKARNLEP-ALTWAANNHD 287 + F LF++ +S++ E G+ D+ + P + ++ A++ + L+P + + + N Sbjct: 335 STRFMEANLFEIDESWMREQGDFDKMLIDPPREGAVAVVTALEEKQLKPWRIVYVSCNPA 394 Query: 288 KLLQNSSML 314 L +++S+L Sbjct: 395 TLARDASVL 403
>RP54_XANCV (P77998) RNA polymerase sigma-54 factor| Length = 479 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/32 (37%), Positives = 21/32 (65%) Frame = +3 Query: 150 DSFVHECGESDETYLKLPFQEMYGILEAMKAR 245 ++ + CGESD YL+ QE +L++++AR Sbjct: 307 ENLIRSCGESDAGYLRGQLQEARWLLKSLEAR 338
>MURC_RHOPA (P61682) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 467 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/42 (38%), Positives = 21/42 (50%) Frame = +3 Query: 78 DFEDSTVNKIIANHFYRQGLFDLGDSFVHECGESDETYLKLP 203 D + + +N I N + GD V E ESD T+LKLP Sbjct: 133 DLDPTVINGGIINAYGTNARLGGGDWMVVEADESDGTFLKLP 174
>MURC_BARQU (Q6G125) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 475 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +3 Query: 81 FEDSTVNKIIANHFYRQGLFDLGDSFVHECGESDETYLKLP 203 F+ +N I N + GD V E ESD T+LKLP Sbjct: 134 FDPMVINGGIINAYGTNARMGSGDWMVVEADESDGTFLKLP 174
>VN34_ROTBU (P04514) Nonstructural RNA-binding protein 34 (NS34) (NCVP4)| (NS2/VP9) Length = 313 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/72 (27%), Positives = 34/72 (47%) Frame = +3 Query: 129 QGLFDLGDSFVHECGESDETYLKLPFQEMYGILEAMKARNLEPALTWAANNHDKLLQNSS 308 +G ++ DSFV E E D K + ++ E++K R E TW +Q + Sbjct: 149 RGAVEVDDSFVEEKMEVDTVDWKSRYDQLERRFESLKQRVNEKYTTW--------VQKAK 200 Query: 309 MLELKLHSLQSV 344 + ++SLQ+V Sbjct: 201 KVNENMYSLQNV 212
>NRIP1_HUMAN (P48552) Nuclear receptor-interacting protein 1 (Nuclear factor| RIP140) (Receptor-interacting protein 140) Length = 1158 Score = 29.3 bits (64), Expect = 2.4 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 2/96 (2%) Frame = +3 Query: 90 STVNKIIANHFYRQGLFDLGDSFVHECGESDETYLKLPFQEMYGILEAMKARNLEPALTW 269 + V+K A H F++ S C +S+ L + G+L KAR L+ + W Sbjct: 35 TAVDKKSAGHNEEDQNFNISGSAFPTC-QSNGPVLNTHTYQGSGMLHLKKARLLQSSEDW 93 Query: 270 AANNHDKLLQNSSMLELKLHSLQS--VEILTKGRRD 371 A +L + L +K +L + V+ + KG++D Sbjct: 94 NAAKRKRLSDSIMNLNVKKEALLAGMVDSVPKGKQD 129
>MURC_BARHE (Q6G2Q6) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 475 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +3 Query: 81 FEDSTVNKIIANHFYRQGLFDLGDSFVHECGESDETYLKLP 203 F+ +N I N + GD V E ESD T+LKLP Sbjct: 134 FDPMVINGGIINAYGTNARMGEGDWMVVEADESDGTFLKLP 174
>SEC8_YEAST (P32855) Exocyst complex component SEC8| Length = 1065 Score = 29.3 bits (64), Expect = 2.4 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%) Frame = +3 Query: 63 AYRNVDFEDSTVNKIIANHFY------RQGLFD-LGDSFVHECGESD-ETYLKLPF-QEM 215 AYRN+ E S +N + +FY LF+ + D+ + C D +T L+L F +EM Sbjct: 944 AYRNLSSEPSKINMNVTMNFYSLCGSSEAELFEYIKDNELPHCSVEDLKTILRLQFSEEM 1003 Query: 216 YGILEAMKARNLEPALTWAANNHDKLLQNSSMLE 317 + L+ + + ++ + + + L+ S LE Sbjct: 1004 HRQLKRQSTSSTKGSIKPSNKRYTEALEKLSNLE 1037
>MURC_BRAJA (Q89FU8) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 467 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +3 Query: 84 EDSTVNKIIANHFYRQGLFDLGDSFVHECGESDETYLKLP 203 + + +N I N + GD V E ESD T+LKLP Sbjct: 135 DPTVINGGIINAYGSNARLGAGDWMVVEADESDGTFLKLP 174
>TRUA_CHLMU (Q9PJT0) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 267 Score = 28.1 bits (61), Expect = 5.4 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 2/85 (2%) Frame = -1 Query: 309 LSYSATAYHGY-WQPK*AQAQGFLLSSLQ-VFHTSPGMAISGKSRLIHRTRGQRSLRDQR 136 ++Y TAY G+ +QP Q L + LQ + T + SG++ +GQ + Sbjct: 9 IAYQGTAYSGWQYQPNALSIQEVLETLLQKISRTRISVIASGRTDAGVHAQGQVAH---- 64 Query: 135 GPGDRNDSLLSYLLCCPQNPHFCMP 61 CCP +PHF P Sbjct: 65 -------------FCCPDHPHFSDP 76
>P210L_MOUSE (Q9D2F7) Nuclear pore membrane glycoprotein 210-like precursor| (Nucleoporin 210 kDa-like) Length = 1881 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/18 (61%), Positives = 16/18 (88%) Frame = -1 Query: 243 LLSSLQVFHTSPGMAISG 190 +L SL+VFH+SP +A+SG Sbjct: 1716 VLESLEVFHSSPFLAVSG 1733
>YK82_SCHPO (Q9HGP4) Hypothetical bromodomain protein C631.02| Length = 727 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 4/60 (6%) Frame = +3 Query: 78 DFEDST---VNKIIANHFYRQG-LFDLGDSFVHECGESDETYLKLPFQEMYGILEAMKAR 245 DF+ T ++ + +++Y +FD GD F+ + GE E + ++ L+AMK+R Sbjct: 499 DFDSETYMGMSSVNTDYYYGDNEVFDSGDEFLEDDGEEFEA-VNRQIHKLQSTLQAMKSR 557
>OPSD_MULSU (Q9YH01) Rhodopsin| Length = 354 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -1 Query: 138 RGPGDRNDSLLSYLLCCPQNPHFCMPLIHLY 46 R G N+S + Y+ CC HF +PLI ++ Sbjct: 194 RAEGFNNESFVVYMFCC----HFMIPLIIVF 220
>NEIL1_HUMAN (Q96FI4) Endonuclease VIII-like 1 (EC 3.2.2.-) (EC 4.2.99.18)| (Nei-like 1) (DNA glycosylase/AP lyase Neil1) (DNA-(apurinic or apyrimidinic site) lyase Neil1) (NEH1) (FPG1) Length = 389 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/55 (32%), Positives = 28/55 (50%) Frame = +3 Query: 201 PFQEMYGILEAMKARNLEPALTWAANNHDKLLQNSSMLELKLHSLQSVEILTKGR 365 PF++ +LEA++ P LT + K LQN +LEL HS+ + G+ Sbjct: 189 PFEKARSVLEALQQHRPSPELTLSQKIRTK-LQNPDLLEL-CHSVPKEVVQLGGK 241
>SETD4_MOUSE (P58467) SET domain-containing protein 4| Length = 439 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Frame = -1 Query: 219 HTSPGMAISGKSRLIHRTRGQRSLRDQR-----GPGDRNDSLLSYLLCCPQNPHFCMPL 58 H A + K+R R + Q GP D LL Y +NPH C+P+ Sbjct: 239 HVQVKAAFNEKTRCYEIRTASRCRKHQEVFICYGPHDNQRLLLEYGFVSVRNPHACVPV 297
>BCL9_HUMAN (O00512) B-cell lymphoma 9 protein (Bcl-9) (Legless homolog)| Length = 1426 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -1 Query: 162 GQRSLRDQRGPGDRNDSLLSYLLCCPQNP 76 G R+LR+ GP R +S LS++ P NP Sbjct: 796 GLRNLREPIGPDQRTNSRLSHMPPLPLNP 824
>YHS6_YEAST (P38832) Hypothetical 16.6 kDa protein in NDT80-FUR1 intergenic| region Length = 159 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = -3 Query: 331 EWSFNSSIELFCNSLSWLLAAQVSAGSRFLAFIASSIPYISWNGN 197 E FNS+ E F +S SW LAAQ S + WNG+ Sbjct: 42 EGKFNSTDEAFNSSASWSLAAQQKKISNAAVYDVG-----GWNGS 81
>MURC_BRUSU (P65469) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 471 Score = 27.7 bits (60), Expect = 7.0 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = +3 Query: 36 KSFNTDVSKAYRNVDFEDSTV-NKIIANHFYRQGLFDLGDSFVHECGESDETYLKLP 203 K+ T + A + D TV N I N + GD V E ESD T+LKLP Sbjct: 118 KTTTTSLVAALLDAGHLDPTVINGGIINAYGTNARMGDGDWMVVEADESDGTFLKLP 174
>MURC_BRUME (P65468) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 471 Score = 27.7 bits (60), Expect = 7.0 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = +3 Query: 36 KSFNTDVSKAYRNVDFEDSTV-NKIIANHFYRQGLFDLGDSFVHECGESDETYLKLP 203 K+ T + A + D TV N I N + GD V E ESD T+LKLP Sbjct: 118 KTTTTSLVAALLDAGHLDPTVINGGIINAYGTNARMGDGDWMVVEADESDGTFLKLP 174
>BCL9_MOUSE (Q9D219) B-cell lymphoma 9 protein (Bcl-9)| Length = 1425 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -1 Query: 162 GQRSLRDQRGPGDRNDSLLSYLLCCPQNP 76 G R+LR+ GP R +S LS++ P NP Sbjct: 795 GLRNLREPIGPDQRTNSRLSHMPPLPLNP 823
>CSN1_DROME (Q9VVU5) COP9 signalosome complex subunit 1b (Signalosome subunit| 1b) (Dch1-2) Length = 525 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%) Frame = +1 Query: 22 SRFSRSLLI-QMYQRHTEMWILRTA 93 S F R+L++ + YQRHT M +LR A Sbjct: 463 STFERALIMGKQYQRHTRMLVLRAA 487
>UBP1_HUMAN (O94782) Ubiquitin carboxyl-terminal hydrolase 1 (EC 3.1.2.15)| (Ubiquitin thioesterase 1) (Ubiquitin-specific processing protease 1) (Deubiquitinating enzyme 1) (hUBP) Length = 785 Score = 27.7 bits (60), Expect = 7.0 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%) Frame = -1 Query: 246 FLLSSLQVFHTSPGMAISGKSRLIHRTRGQRSLRDQRGPGD----RNDSLLSYLLCC 88 +L S LQV + PG K +R + +L+D+ D + DSL SY L C Sbjct: 91 YLNSILQVLYFCPGFKSGVKHLFNIISRKKEALKDEANQKDKGNCKEDSLASYELIC 147
>OAF_DROVI (O18638) Out at first protein| Length = 305 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/20 (50%), Positives = 16/20 (80%) Frame = -2 Query: 278 IGSPSERRLKVSCFHRFKYS 219 IG+P+ R+ VSC+H F++S Sbjct: 15 IGTPTLRQRSVSCYHFFRHS 34
>CDGT_BACSS (P31747) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 718 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -1 Query: 360 LW*VSQQTEENGASTRALSYSATAYHGYW 274 LW +SQ E A+ + TAYHGYW Sbjct: 108 LW-ISQPVENIFATINYSGVTNTAYHGYW 135
>CDGT_BACLI (P14014) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 718 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -1 Query: 360 LW*VSQQTEENGASTRALSYSATAYHGYW 274 LW +SQ E A+ + TAYHGYW Sbjct: 108 LW-ISQPVENIFATINYSGVTNTAYHGYW 135
>CDGT1_BACCI (P30920) Cyclomaltodextrin glucanotransferase precursor (EC| 2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase) Length = 718 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -1 Query: 360 LW*VSQQTEENGASTRALSYSATAYHGYW 274 LW +SQ E A+ + TAYHGYW Sbjct: 108 LW-ISQPVENIFATINYSGVTNTAYHGYW 135
>DCL4_ARATH (P84634) Dicer-like protein 4 (EC 3.1.26.-)| Length = 1589 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/51 (27%), Positives = 22/51 (43%) Frame = +3 Query: 9 LSKYLKVLEKSFNTDVSKAYRNVDFEDSTVNKIIANHFYRQGLFDLGDSFV 161 LSK + LE N V NV + + ++ ++YR L D S + Sbjct: 313 LSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYRSALSDASQSTI 363
>YFHK_ECOLI (P52101) Putative sensor-like histidine kinase yfhK (EC 2.7.13.3)| Length = 496 Score = 27.3 bits (59), Expect = 9.1 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 9/69 (13%) Frame = -2 Query: 266 SERRLKVSCFHRFKYSIHLLEWQF---------QVSLV*FTALVDKGVSEIKEALAIEMI 114 S R+L + F + +L WQ Q +LV T L+D SE A+EM Sbjct: 31 SLRQLVMLAFLLILLPLLVLAWQAWQSLNALSDQAALVNRTTLIDARRSEAMTNAALEME 90 Query: 113 RYYLIYCAV 87 R Y YC + Sbjct: 91 RSYRQYCVL 99
>VIN3_ARATH (Q9FIE3) VERNALIZATION-INSENSITIVE protein 3| Length = 600 Score = 27.3 bits (59), Expect = 9.1 Identities = 9/31 (29%), Positives = 17/31 (54%) Frame = -1 Query: 180 LIHRTRGQRSLRDQRGPGDRNDSLLSYLLCC 88 L+ R G+ S D+R + ++ Y++CC Sbjct: 80 LVSRPLGETSCSDRRNSRKKEKKMIGYIICC 110 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,872,571 Number of Sequences: 219361 Number of extensions: 896408 Number of successful extensions: 2886 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2787 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2882 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
