ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast61h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan protein 1 pre... 97 1e-20
2FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 p... 92 5e-19
3FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 pre... 86 4e-17
4RADA_PICTO (Q6L126) DNA repair and recombination protein radA 30 3.3
5CNX1_ARATH (Q39054) Molybdopterin biosynthesis CNX1 protein (Mol... 28 9.7

>FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan protein 1 precursor|
          Length = 424

 Score = 97.4 bits (241), Expect = 1e-20
 Identities = 43/91 (47%), Positives = 65/91 (71%)
 Frame = +2

Query: 158 YNITKILGEYPEYSQFNKLLTQTRLAQDINKRRTITVLVVANSDMGSLAGGGRTLQTIRH 337
           +N+T++L  +P +S F+  LTQT LA +IN+RRTITV  V N+ M +L   G TL T+++
Sbjct: 25  HNVTRLLANHPSFSSFSHFLTQTHLADEINRRRTITVCAVDNAAMSALTSKGYTLSTLKN 84

Query: 338 MLQIHVLVDYYGGKKLHQLAHGVTACSSMFQ 430
           +L +HVL+DY+G KKLHQ+  G    +++FQ
Sbjct: 85  ILSLHVLLDYFGTKKLHQIRDGSALAATLFQ 115



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>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor|
          Length = 422

 Score = 92.0 bits (227), Expect = 5e-19
 Identities = 47/92 (51%), Positives = 64/92 (69%)
 Frame = +2

Query: 155 GYNITKILGEYPEYSQFNKLLTQTRLAQDINKRRTITVLVVANSDMGSLAGGGRTLQTIR 334
           G+NIT+IL + PEYS FN  L+QT+LA +IN R TITVLV+ N  M SLA G   L  ++
Sbjct: 25  GHNITQILSDTPEYSSFNNYLSQTKLADEINSRTTITVLVLNNGAMSSLA-GKHPLSVVK 83

Query: 335 HMLQIHVLVDYYGGKKLHQLAHGVTACSSMFQ 430
           + L + VL+DYY   KLHQL+ G T  ++++Q
Sbjct: 84  NALSLLVLLDYYDPLKLHQLSKGTTLTTTLYQ 115



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>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor|
           (AtAGP8)
          Length = 420

 Score = 85.9 bits (211), Expect = 4e-17
 Identities = 43/91 (47%), Positives = 63/91 (69%)
 Frame = +2

Query: 158 YNITKILGEYPEYSQFNKLLTQTRLAQDINKRRTITVLVVANSDMGSLAGGGRTLQTIRH 337
           +NIT+IL + P+YS FN  L+QT+LA +IN R TITVLV+ N  M +LA G   L  I+ 
Sbjct: 26  HNITQILADSPDYSSFNSYLSQTKLADEINSRTTITVLVLNNGAMSALA-GKHPLSVIKS 84

Query: 338 MLQIHVLVDYYGGKKLHQLAHGVTACSSMFQ 430
            L + VL+DYY  +KLH+++ G T  ++++Q
Sbjct: 85  ALSLLVLLDYYDPQKLHKISKGTTLSTTLYQ 115



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>RADA_PICTO (Q6L126) DNA repair and recombination protein radA|
          Length = 323

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = +2

Query: 170 KILGEYPEYSQFNKLLTQTRLAQDINKRRTITVLVVANSDMGSLAGGGRTLQTIRHMLQI 349
           KI+    +Y+      T   +   +NKR+ I  L   +S++ +L GGG   Q+I      
Sbjct: 59  KIINAARKYADVGNFETGEEI---LNKRKEIKKLTTGSSNLDNLLGGGLETQSITEFFG- 114

Query: 350 HVLVDYYGGKK--LHQLAHGVT 409
               ++  GK   +HQLA   T
Sbjct: 115 ----EFGSGKTQIMHQLAVNAT 132



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>CNX1_ARATH (Q39054) Molybdopterin biosynthesis CNX1 protein (Molybdenum|
           cofactor biosynthesis enzyme CNX1)
          Length = 670

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
 Frame = +2

Query: 167 TKILGEYPEYSQFNKLLTQTRLAQDINK-----RRTITVLV----VANSDMGSLAGGGRT 319
           TK++G+    S+  K+L QT+   DI +      +  TVL     +  S++G LA  G T
Sbjct: 124 TKVIGDVSTESKRVKILIQTKKGTDIRRVGCDIEKDATVLTTGERIGASEIGLLATAGVT 183

Query: 320 LQTIRHMLQIHVL 358
           +  +  M  + +L
Sbjct: 184 MVKVYPMPIVAIL 196


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.141    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,111,863
Number of Sequences: 219361
Number of extensions: 446237
Number of successful extensions: 1078
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
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