ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast61h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BAB1_DROME (Q9W0K7) Protein bric-a-brac 1 28 5.8
2TRPA_SYNPX (Q7TTU8) Tryptophan synthase alpha chain (EC 4.2.1.20) 28 7.5

>BAB1_DROME (Q9W0K7) Protein bric-a-brac 1|
          Length = 977

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 157 PHSDPAAEGRTSQAMAATHHPASPTG 234
           PH   +     SQ   + HHPASP G
Sbjct: 403 PHHHASPAPHPSQTAGSAHHPASPAG 428



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>TRPA_SYNPX (Q7TTU8) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 269

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 154 VPHSDPAAEGRTSQAMAATHHPASPTGGK 240
           +P+SDP A+G   QA AA    A  T GK
Sbjct: 57  MPYSDPLADGPVIQAAAARALAAGTTPGK 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.310    0.122    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,719,152
Number of Sequences: 219361
Number of extensions: 342735
Number of successful extensions: 797
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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