ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast61g11 |
|---|---|
| Clone Library Name | barley_pub |
>BGLX_SALTY (Q56078) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) (T-cell inhibitor) Length = 765 Score = 62.8 bits (151), Expect = 2e-10 Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 13/136 (9%) Frame = +2 Query: 5 LKNKLKFRGFVISDWQGI-DRITSPPGVNYSYSVEAGVGAGIDMIMVPFAYTEFIDDLTY 181 L+++ F+G +SD I + I + +V + AG+DM M Y++++ L Sbjct: 274 LRDEWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKAGVDMSMADEYYSKYLPGL-- 331 Query: 182 QVKNNIIPMSRINDAVYRILRVKFTMGLFESPYADPSLVGELGKQE------------HR 325 +K+ + M+ ++DA +L VK+ MGLF PY+ LG +E HR Sbjct: 332 -IKSGKVTMAELDDATRHVLNVKYDMGLFNDPYS------HLGPKESDPVDTNAESRLHR 384 Query: 326 DLAREAVRKSLVLLKN 373 ARE R+S+VLLKN Sbjct: 385 KEAREVARESVVLLKN 400
>BGLX_ECOLI (P33363) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 765 Score = 60.5 bits (145), Expect = 9e-10 Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 13/136 (9%) Frame = +2 Query: 5 LKNKLKFRGFVISDWQGI-DRITSPPGVNYSYSVEAGVGAGIDMIMVPFAYTEFIDDLTY 181 L+++ F+G +SD I + I + +V + +GI+M M Y++++ L Sbjct: 274 LRDQWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKSGINMSMSDEYYSKYLPGL-- 331 Query: 182 QVKNNIIPMSRINDAVYRILRVKFTMGLFESPYADPSLVGELGKQE------------HR 325 +K+ + M+ ++DA +L VK+ MGLF PY+ LG +E HR Sbjct: 332 -IKSGKVTMAELDDAARHVLNVKYDMGLFNDPYS------HLGPKESDPVDTNAESRLHR 384 Query: 326 DLAREAVRKSLVLLKN 373 ARE R+SLVLLKN Sbjct: 385 KEAREVARESLVLLKN 400
>BGLX_ERWCH (Q46684) Periplasmic beta-glucosidase/beta-xylosidase precursor| [Includes: Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase); Beta-xylosidase (EC 3.2.1.37) (1,4-beta-D-xylan xylohydrolase) (Xylan 1,4-beta-xylosidase)] Length = 654 Score = 47.4 bits (111), Expect = 8e-06 Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 21/155 (13%) Frame = +2 Query: 5 LKNKLKFRGFVISDW-----------QGIDRITSPPGVNYSYSVEA---------GVGAG 124 L+ + F G ++SDW G+ P + VE V AG Sbjct: 347 LRGQYGFDGVILSDWLITNDCKGDCLTGVKPGEKPVPRGMPWGVEKLTPAERFVKAVNAG 406 Query: 125 IDMIMVPFAYTEFIDDLTYQVKNNIIPMSRINDAVYRILRVKFTMGLFESPYADPSLVGE 304 +D F L V++ + +R++ +V RIL+ KF GLFE PY + + + Sbjct: 407 VDQ----FGGVTDSALLVQAVQDGKLTEARLDTSVNRILKQKFQTGLFERPYVNATQAND 462 Query: 305 L-GKQEHRDLAREAVRKSLVLLKNGKSASTPLLPL 406 + G+ + + LA + +SLVLL+N LLPL Sbjct: 463 IVGRADWQQLADDTQARSLVLLQNNN-----LLPL 492
>BGLB_CLOTM (P14002) Thermostable beta-glucosidase B (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 754 Score = 43.9 bits (102), Expect = 9e-05 Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 1/124 (0%) Frame = +2 Query: 5 LKNKLKFRGFVISDWQGI-DRITSPPGVNYSYSVEAGVGAGIDMIMVPFAYTEFIDDLTY 181 LKN+ GFV+SDW + DR++ G+ AG+D+ M P ++ + Sbjct: 218 LKNEWMHDGFVVSDWGAVNDRVS-------------GLDAGLDLEM-PTSHGITDKKIVE 263 Query: 182 QVKNNIIPMSRINDAVYRILRVKFTMGLFESPYADPSLVGELGKQEHRDLAREAVRKSLV 361 VK+ + + +N AV RIL+V M L + + + H LAR+A +S+V Sbjct: 264 AVKSGKLSENILNRAVERILKV-IIMAL-----ENKKENAQYEQDAHHRLARQAAAESMV 317 Query: 362 LLKN 373 LLKN Sbjct: 318 LLKN 321
>BGLS_HANAN (P06835) Beta-glucosidase precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 825 Score = 41.2 bits (95), Expect = 6e-04 Identities = 29/87 (33%), Positives = 40/87 (45%) Frame = +2 Query: 5 LKNKLKFRGFVISDWQGIDRITSPPGVNYSYSVEAGVGAGIDMIMVPFAYTEFIDDLTYQ 184 LK +L F+GFV++DW + YS AG+DM M P F +LT Sbjct: 286 LKEELGFQGFVMTDWGAL------------YSGIDAANAGLDMDM-PCEAQYFGGNLTTA 332 Query: 185 VKNNIIPMSRINDAVYRILRVKFTMGL 265 V N +P R++D RIL G+ Sbjct: 333 VLNGTLPQDRLDDMATRILSALIYSGV 359
>BGL1_ASPAC (P48825) Beta-glucosidase 1 precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 860 Score = 40.4 bits (93), Expect = 0.001 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 31/157 (19%) Frame = +2 Query: 5 LKNKLKFRGFVISDWQGIDRITSPPGVNYSYSVEAGVG---AGIDMIM---VPF--AYTE 160 LK +L F+GFV+SDW G ++S GVG AG+DM M + F A + Sbjct: 267 LKAELGFQGFVMSDW----------GAHHS-----GVGSALAGLDMSMPGDITFDSATSF 311 Query: 161 FIDDLTYQVKNNIIPMSRINDAVYRILRVKFTMG---LFESPYADPSLVGELG------- 310 + +LT V N +P R++D RI+ + +G L++ P E G Sbjct: 312 WGTNLTIAVLNGTVPQWRVDDMAVRIMAAYYKVGRDRLYQPPNFSSWTRDEYGFKYFYPQ 371 Query: 311 -------------KQEHRDLAREAVRKSLVLLKNGKS 382 ++ H ++ R+ S VLLKN + Sbjct: 372 EGPYEKVNHFVNVQRNHSEVIRKLGADSTVLLKNNNA 408
>BGL1_SACFI (P22506) Beta-glucosidase 1 precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 876 Score = 37.4 bits (85), Expect = 0.009 Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 11/126 (8%) Frame = +2 Query: 5 LKNKLKFRGFVISDWQGIDRITSPPGVNYSYSVEAGVGAGIDMIMVPFAY------TEFI 166 LK +L F+GFV+SDW G S V + + +G+DM M Y T F Sbjct: 282 LKEELGFQGFVVSDW----------GAQLS-GVYSAI-SGLDMSMPGEVYGGWNTGTSFW 329 Query: 167 -DDLTYQVKNNIIPMSRINDAVYRILRVKFTMGLFES----PYADPSLVGELGKQEHRDL 331 +LT + N +P+ R++D RIL + F + P E G + + D Sbjct: 330 GQNLTKAIYNETVPIERLDDMATRILAALYATNSFPTEDHLPNFSSWTTKEYGNKYYADN 389 Query: 332 AREAVR 349 E V+ Sbjct: 390 TTEIVK 395
>BGL2_SACFI (P22507) Beta-glucosidase 2 precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 880 Score = 35.4 bits (80), Expect = 0.032 Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 28/161 (17%) Frame = +2 Query: 5 LKNKLKFRGFVISDWQGIDRITSPPGVNYSYSVEAGVGAGIDMIMV---PFAYTEFIDDL 175 LK +L F+GFV+SDW ++ +YS +G+ + ++ + + +L Sbjct: 286 LKEELGFQGFVVSDWAA--------QMSGAYSAISGLDMSMPGELLGGWNTGKSYWGQNL 337 Query: 176 TYQVKNNIIPMSRINDAVYRILRVKFTMGLFESPYADPSL----------------VGEL 307 T V N +P+ R++D RIL + F + P+ + Sbjct: 338 TKAVYNETVPIERLDDMATRILAALYATNSFPTKDRLPNFSSFTTKEYGNEFFVDKTSPV 397 Query: 308 GKQEH---------RDLAREAVRKSLVLLKNGKSASTPLLP 403 K H D A + +S+VLLKN K+ + P+ P Sbjct: 398 VKVNHFVDPSNDFTEDTALKVAEESIVLLKNEKN-TLPISP 437
>RIR1_TREPA (O83972) Ribonucleoside-diphosphate reductase alpha subunit (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 845 Score = 30.8 bits (68), Expect = 0.80 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 10/55 (18%) Frame = +2 Query: 26 RGFVISDWQGIDRITSPPGVNYSY----------SVEAGVGAGIDMIMVPFAYTE 160 RG+V DWQ + R + G+ Y S+ AG AG+D IM + E Sbjct: 696 RGYVSEDWQRLQREVATHGMRNGYLLAVAPTSSTSIIAGTTAGVDPIMKQYFLEE 750
>LONH_ARCFU (O29883) Putative protease La homolog type (EC 3.4.21.-)| Length = 621 Score = 30.4 bits (67), Expect = 1.0 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 4/51 (7%) Frame = +2 Query: 101 VEAGVGAGIDMIMVPFAYTEFIDDLT----YQVKNNIIPMSRINDAVYRIL 241 +EA + AG+ +++P + IDD+ ++ K +IP+SRIN+ + +L Sbjct: 553 IEAAIQAGLKKVIIP---KDNIDDVLLDAEHEGKIEVIPVSRINEVLEHVL 600
>YL_DROME (P98163) Putative vitellogenin receptor precursor (Protein yolkless)| (YL) Length = 1984 Score = 30.4 bits (67), Expect = 1.0 Identities = 16/31 (51%), Positives = 16/31 (51%) Frame = -2 Query: 287 GQHRGSQIDPW*TSP*ESCRQHR*FCSWG*C 195 G H SQI PW TS SCR H C G C Sbjct: 1323 GHHNQSQIQPWSTSS-RSCRPHLFDCQDGEC 1352
>CATA_DESVM (Q9ZN99) Catalase (EC 1.11.1.6)| Length = 479 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -2 Query: 329 DRGVPASRVHQRGLGQHRGSQIDP 258 DRG+PAS H G G H S I P Sbjct: 181 DRGIPASYRHMHGFGSHTFSFISP 204
>RPOC2_PSEAK (Q3ZJ90) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 3462 Score = 29.6 bits (65), Expect = 1.8 Identities = 10/37 (27%), Positives = 23/37 (62%) Frame = +2 Query: 56 IDRITSPPGVNYSYSVEAGVGAGIDMIMVPFAYTEFI 166 +D + + + Y+Y+ +AG+ GID + +P + ++I Sbjct: 79 VDLVENLKSIGYAYATKAGISLGIDDLKIPPSKKDYI 115
>RPOC_WIGBR (Q8D232) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 29.3 bits (64), Expect = 2.3 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = +2 Query: 89 YSYSVEAGVGAGIDMIMVPFAYTEFIDDLTYQV 187 +SY+ ++G GID I++P ++ I + Y+V Sbjct: 629 FSYAAKSGSSVGIDDILIPLKKSKIIKNAEYEV 661
>LONH1_THEAC (Q9HJ89) Putative protease La homolog type 1 (EC 3.4.21.-)| Length = 657 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +2 Query: 101 VEAGVGAGIDMIMVP-FAYTEFIDDLTYQVKNNIIPMSRINDAV 229 VEA + AG++ ++VP Y++ I D + K IIP I D + Sbjct: 569 VEAAIEAGLNKVIVPELNYSDIILDADHVNKIEIIPAKTIEDVL 612
>PSTB_METKA (Q8TUR7) Phosphate import ATP-binding protein pstB (EC 3.6.3.27)| (Phosphate-transporting ATPase) (ABC phosphate transporter) Length = 254 Score = 29.3 bits (64), Expect = 2.3 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Frame = +2 Query: 143 PFAYTEFIDDLTYQVKNNIIPMSRINDAVYRILRVKFTMGLFESPYADPSLVGELGKQEH 322 PF + D++ Y ++ + I D VY L + E DP+ G+Q+ Sbjct: 97 PFPWMSIYDNVAYGLRLMGMDEDEIEDRVYEALEKAALLDQVEDRLDDPASALSGGQQQR 156 Query: 323 RDLARE-AVRKSLVLLKNGKSASTPL 397 +AR A+R ++L+ S P+ Sbjct: 157 LCIARALAMRPEVLLMDEPTSDLDPI 182
>VGLD_HHV1H (P06476) Glycoprotein D precursor| Length = 393 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +2 Query: 20 KFRGFVISDWQGIDRITSPPGVNYSYSVEAGV 115 +FRG D +D++T PPGV Y ++AG+ Sbjct: 41 RFRG---KDLPVLDQLTDPPGVRRVYHIQAGL 69
>VGLD_HHV1P (P57083) Glycoprotein D precursor| Length = 394 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +2 Query: 20 KFRGFVISDWQGIDRITSPPGVNYSYSVEAGV 115 +FRG D +D++T PPGV Y ++AG+ Sbjct: 41 RFRG---KDLPVLDQLTDPPGVRRVYHIQAGL 69
>VGLD_HHV11 (Q69091) Glycoprotein D precursor| Length = 394 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +2 Query: 20 KFRGFVISDWQGIDRITSPPGVNYSYSVEAGV 115 +FRG D +D++T PPGV Y ++AG+ Sbjct: 41 RFRG---KDLPVLDQLTDPPGVRRVYHIQAGL 69
>VGLD_HHV1A (P36318) Glycoprotein D precursor| Length = 394 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +2 Query: 20 KFRGFVISDWQGIDRITSPPGVNYSYSVEAGV 115 +FRG D DR+T PPGV Y ++AG+ Sbjct: 41 RFRG---KDLPVPDRLTDPPGVRRVYHIQAGL 69
>CYAA_SCHPO (P14605) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)| (Adenylyl cyclase) Length = 1692 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = -2 Query: 338 HEQDRGVPASRVHQRGLGQHRGSQIDPW 255 + D G+PAS H L HR S PW Sbjct: 215 NSDDDGIPASAAHILDLDYHRDSYDSPW 242
>PP220_ASFB7 (Q08358) Polyprotein pp220 (220 kDa polyprotein) [Contains: p34; p14;| p37; p150] Length = 2474 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = +2 Query: 248 KFTMGLFESPYADPSLVGELGKQEHRDLAREAVRK 352 KF L E + DPSL ELGK +++L R+A+ + Sbjct: 1097 KFRKQLSEM-FEDPSLQQELGKVSYQELIRQAINE 1130
>CATA_CAMJE (Q59296) Catalase (EC 1.11.1.6)| Length = 507 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -2 Query: 332 QDRGVPASRVHQRGLGQHRGSQID 261 +DRG+PAS H G G H S I+ Sbjct: 177 RDRGIPASYRHMHGFGSHTYSFIN 200
>SQHC_BRAJA (P54924) Squalene--hopene cyclase (EC 5.4.99.17)| Length = 660 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/78 (24%), Positives = 38/78 (48%) Frame = +2 Query: 125 IDMIMVPFAYTEFIDDLTYQVKNNIIPMSRINDAVYRILRVKFTMGLFESPYADPSLVGE 304 I+++++PF I+ ++Y + ++P+ I R K +G+ E DP +G Sbjct: 162 IEIMLLPFWSPFHINKISYWARTTMVPLMVIAALKPRAKNPK-GVGIDELFLQDPRSIGM 220 Query: 305 LGKQEHRDLAREAVRKSL 358 K H+ +A + +SL Sbjct: 221 TAKAPHQSMAWFLLFRSL 238
>ICEN_PSESY (P06620) Ice nucleation protein| Length = 1200 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -1 Query: 402 GNNGVEADFPFFSNTND 352 G NGVEAD P++ N +D Sbjct: 1168 GENGVEADIPYYVNEDD 1184
>ICEK_PSESX (O30611) Ice nucleation protein| Length = 1148 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -1 Query: 402 GNNGVEADFPFFSNTND 352 G NGVEAD P++ N +D Sbjct: 1116 GENGVEADIPYYVNEDD 1132
>ICEV_PSESX (O33479) Ice nucleation protein| Length = 1196 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -1 Query: 402 GNNGVEADFPFFSNTND 352 G NGVEAD P++ N +D Sbjct: 1164 GENGVEADIPYYVNEDD 1180
>HLYC_ECOLI (P06736) Hemolysin-activating lysine-acyltransferase hlyC (EC| 2.3.1.-) (Toxin-activating protein C, PHLY152) (Hemolysin C) Length = 170 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 17/63 (26%) Frame = +2 Query: 218 NDAVYRILRVKFTMGLFESPYADP-----------------SLVGELGKQEHRDLAREAV 346 N A+Y+ +R KF LF + DP L ++ KQ H +L E Sbjct: 100 NGALYKYMRKKFPDELFRAIRVDPKTHVGKVSEFHGGKIDKQLANKIFKQYHHELITEVK 159 Query: 347 RKS 355 RKS Sbjct: 160 RKS 162
>RR3_OENHO (Q9MTI7) Chloroplast 30S ribosomal protein S3| Length = 218 Score = 27.7 bits (60), Expect = 6.8 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 6/126 (4%) Frame = +2 Query: 5 LKNKLKFRGFVISDWQGIDRITSPPGVNYSYSVEAGVGAGIDMIMVPFAYTEF----IDD 172 L+ K R + + Q +I+S GV +E + ID+I V Y F I+D Sbjct: 32 LQEDQKIRDCIQNYIQKNMQISSDSGVEGIARIE--IRKRIDLIQVKI-YMGFPKLLIED 88 Query: 173 LTYQVKNNIIPMSRINDAVYRILRVKFTMGLFESPYADPSLVGEL--GKQEHRDLAREAV 346 T +++ + + ++V R ++ T+ PY DP+++ E G+ +R R+A+ Sbjct: 89 GTRRIEELQRIVQKEINSVNR--KINITITKITKPYGDPNILAEFIAGQLNNRVSFRKAI 146 Query: 347 RKSLVL 364 +K++ L Sbjct: 147 QKAIEL 152
>FLGJ_BUCAP (Q8K9K1) Putative flagellar protein flgJ homolog| Length = 106 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = +2 Query: 155 TEFIDDLTYQVKNN 196 T+FI+DL YQVKNN Sbjct: 15 TKFINDLKYQVKNN 28
>PKHD1_HUMAN (Q8TCZ9) Polycystic kidney and hepatic disease 1 precursor| (Fibrocystin) (Polyductin) (Tigmin) Length = 4074 Score = 27.3 bits (59), Expect = 8.8 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = +2 Query: 41 SDWQGIDRITSPPGVNYS 94 S+W I +TSPPGVN++ Sbjct: 3823 SNWHFIFTVTSPPGVNFT 3840
>RUVB1_CRYNE (Q5KPZ8) RuvB-like helicase 1 (EC 3.6.1.-)| Length = 484 Score = 27.3 bits (59), Expect = 8.8 Identities = 20/48 (41%), Positives = 26/48 (54%) Frame = +2 Query: 257 MGLFESPYADPSLVGELGKQEHRDLAREAVRKSLVLLKNGKSASTPLL 400 +GL + A S G +G+ LAREA+ L LLK GK + PLL Sbjct: 41 LGLADDGTAMSSSQGFIGQI----LAREALGLHLSLLKGGKYSGRPLL 84
>GCR_PAROL (O73673) Glucocorticoid receptor (GR)| Length = 807 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%) Frame = +1 Query: 193 QHHPHEQNQ-RCCLQDSQGEVHH 258 QHH H+Q Q R LQ Q ++HH Sbjct: 258 QHHQHQQQQHRHLLQHQQHQLHH 280
>TIG_AGRT5 (Q8UEU0) Trigger factor (TF)| Length = 492 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +2 Query: 278 YADPSLVGELGKQEHRDLAREAVRKSLVLLKNGKSA 385 +AD E ++E+R LA VR LVL + G+ A Sbjct: 335 FADEDTTEEEAREEYRKLAERRVRLGLVLSEIGEKA 370
>RPOC_BLOPB (Q492C0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1416 Score = 27.3 bits (59), Expect = 8.8 Identities = 10/33 (30%), Positives = 19/33 (57%) Frame = +2 Query: 89 YSYSVEAGVGAGIDMIMVPFAYTEFIDDLTYQV 187 ++Y+ +G GID +M+P + ID+ +V Sbjct: 630 FAYAARSGASVGIDDMMIPSKKADIIDEAESEV 662 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,525,263 Number of Sequences: 219361 Number of extensions: 1297726 Number of successful extensions: 3135 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 3074 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3132 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
