ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast61g07 |
|---|---|
| Clone Library Name | barley_pub |
>NUP3_PENSQ (P24504) Nuclease PA3 (EC 3.1.3.6) (Endonuclease PA3)| (Deoxyribonuclease PA3) Length = 270 Score = 58.9 bits (141), Expect = 3e-09 Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 6/99 (6%) Frame = +3 Query: 132 WGEEGHYMTCKIAEGFLTGEASAAVKGLLPEWAVGELAAACSWPDAVRRQM--PWSGSLH 305 WG GH +A+ +++ EA++ +G+L + LA+ SW D R WS SLH Sbjct: 1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60 Query: 306 FADT----PGDCKFSYARDCHGTKGEKDMCVVGGINNYT 410 F D P +C Y RDC G+ G C + I NYT Sbjct: 61 FIDAEDNPPTNCNVDYERDC-GSSG----CSISAIANYT 94
>NUP1_PENCI (P24289) Nuclease P1 (EC 3.1.30.1) (Endonuclease P1)| (Deoxyribonuclease P1) Length = 270 Score = 58.9 bits (141), Expect = 3e-09 Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 6/99 (6%) Frame = +3 Query: 132 WGEEGHYMTCKIAEGFLTGEASAAVKGLLPEWAVGELAAACSWPDAVRRQM--PWSGSLH 305 WG GH +A+ +++ EA++ +G+L + LA+ SW D R WS SLH Sbjct: 1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60 Query: 306 FADT----PGDCKFSYARDCHGTKGEKDMCVVGGINNYT 410 F D P +C Y RDC G+ G C + I NYT Sbjct: 61 FIDAEDNPPTNCNVDYERDC-GSSG----CSISAIANYT 94
>NUS1_ASPOR (P24021) Nuclease S1 precursor (EC 3.1.30.1) (Endonuclease S1)| (Single-stranded-nucleate endonuclease) (Deoxyribonuclease S1) Length = 287 Score = 43.9 bits (102), Expect = 9e-05 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 6/99 (6%) Frame = +3 Query: 132 WGEEGHYMTCKIAEGFLTGEASAAVKGLLPEWAVGELAAACSWPDAVR--RQMPWSGSLH 305 WG GH IA+ F+ + + +L + + LA +W D + +S H Sbjct: 21 WGNLGHETVAYIAQSFVASSTESFCQNILGDDSTSYLANVATWADTYKYTDAGEFSKPYH 80 Query: 306 FADT----PGDCKFSYARDCHGTKGEKDMCVVGGINNYT 410 F D P C Y RDC G+ G C + I NYT Sbjct: 81 FIDAQDNPPQSCGVDYDRDC-GSAG----CSISAIQNYT 114
>COX11_PONPY (Q5R7U6) Cytochrome c oxidase assembly protein COX11, mitochondrial| precursor Length = 277 Score = 31.6 bits (70), Expect = 0.47 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = -3 Query: 286 GIWRRTASGHEHAAASSPTAHSGRSPFTAADASPVRK 176 G W+R + G H A P H +PFT A R+ Sbjct: 54 GTWKRCSLGARHPALQPPRRHKNSNPFTRAQKEEWRR 90
>SPTN4_HUMAN (Q9H254) Spectrin beta chain, brain 3 (Spectrin, non-erythroid beta| chain 3) (Beta-IV spectrin) Length = 2564 Score = 31.2 bits (69), Expect = 0.61 Identities = 19/36 (52%), Positives = 22/36 (61%) Frame = -2 Query: 278 APHGVRPRARRRELADGPLRQEPLHRRRRLARQETL 171 A VRPR R+E AD R E L RRRR RQE++ Sbjct: 2223 AAEQVRPRPERQESAD---RAEELPRRRRPERQESV 2255 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = -2 Query: 260 PRARRRELADGPLRQEPLHRRRRLARQETLGDLAGHVVAL 141 PR RR E + + E RRRR RQE+ A H + L Sbjct: 2244 PRRRRPERQESVDQSEEAARRRRPERQESAEHEAAHSLTL 2283
>ALL2_ASPFU (P79017) Major allergen Asp f 2 precursor (Asp f II)| Length = 310 Score = 30.0 bits (66), Expect = 1.4 Identities = 21/68 (30%), Positives = 32/68 (47%) Frame = -3 Query: 334 NLQSPGVSAKCREPDHGIWRRTASGHEHAAASSPTAHSGRSPFTAADASPVRKPSAILQV 155 ++ +PGV C HG + +G A AS+ T+ S + A +P PSA + V Sbjct: 238 DIAAPGVG--CAGESHGPDQGHDTGSASAPASTSTSSSSSGSGSGATTTPTDSPSATIDV 295 Query: 154 M*WPSSPH 131 PS+ H Sbjct: 296 ---PSNCH 300
>CYAA_USTMA (P49606) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)| (Adenylyl cyclase) Length = 2493 Score = 28.9 bits (63), Expect = 3.0 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 9/55 (16%) Frame = -3 Query: 307 KCREPDHGIWRRTASGHEHAAASSPTAH---------SGRSPFTAADASPVRKPS 170 K R P G ++ +S H +A+++ PT H S P AA+ +P+R P+ Sbjct: 290 KTRNP-FGFLKKKSSAHSNASSNHPTRHDIGSVSSLSSRYGPNAAANVNPMRPPA 343
>LAMA_DROME (Q00174) Laminin alpha chain precursor| Length = 3712 Score = 28.5 bits (62), Expect = 4.0 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = +3 Query: 288 WSGSLHFADTPGDCKFSYARDCH 356 W+ HF+DTP DC+ + +D + Sbjct: 155 WTPWQHFSDTPADCETYFGKDTY 177
>MFNG_MOUSE (O09008) Beta-1,3-N-acetylglucosaminyltransferase manic fringe (EC| 2.4.1.222) (O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) Length = 321 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 6/49 (12%) Frame = +3 Query: 225 WAVGELAAACSWPDAVRRQMPWSGSLHFADT------PGDCKFSYARDC 353 W A C + +PW+ HF DT P DC Y +C Sbjct: 193 WFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIEC 241
>TER_EUGGR (Q5EU90) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.44) Length = 539 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 4/45 (8%) Frame = +3 Query: 162 KIAEGFLTGEASAAVKGLLPEWAVGELAAACS----WPDAVRRQM 284 ++AEGF +GEA++A P+WA +AAA S W A RR + Sbjct: 71 QMAEGF-SGEATSAWAAAGPQWAAPLVAAASSALALWWWAARRSV 114
>RB6I2_RAT (Q811U3) RAB6-interacting protein 2 (ERC protein 1) (ERC1)| (CAZ-associated structural protein 2) (CAST2) Length = 948 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = -3 Query: 331 LQSPGVSAKCREPDHGIWRRTASGHEH 251 LQS G+SAK E DH RR A H Sbjct: 316 LQSKGLSAKATEEDHERTRRLAEAEMH 342
>RB6I2_HUMAN (Q8IUD2) RAB6-interacting protein 2 (ERC protein 1)| Length = 1116 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = -3 Query: 331 LQSPGVSAKCREPDHGIWRRTASGHEH 251 LQS G+SAK E DH RR A H Sbjct: 316 LQSKGLSAKATEEDHERTRRLAEAEMH 342
>RB6I2_MOUSE (Q99MI1) RAB6-interacting protein 2 (ERC protein 1) (ERC1)| (CAZ-associated structural protein 2) (CAST2) Length = 1120 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/27 (51%), Positives = 15/27 (55%) Frame = -3 Query: 331 LQSPGVSAKCREPDHGIWRRTASGHEH 251 LQS G+SAK E DH RR A H Sbjct: 316 LQSKGLSAKATEEDHERTRRLAEAEMH 342
>HMGH_STRPU (P40644) High mobility group protein 1 homolog| Length = 200 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = +3 Query: 183 TGEASAAVKGLLPEWAVGELA 245 +GE AA+K + P W+VG++A Sbjct: 111 SGENRAAIKSVHPNWSVGDIA 131
>GLR24_ARATH (O81776) Glutamate receptor 2.4 precursor (Ligand-gated ion channel| 2.4) Length = 896 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%) Frame = -3 Query: 247 AASSPTAHSGRSPF----TAADASPVRKPSAILQVM*W 146 +A+SP SGRSP+ T D+S V+ S I++V W Sbjct: 127 SATSPFLDSGRSPYFFRSTYDDSSQVQAISEIIKVFGW 164
>IRF7_HUMAN (Q92985) Interferon regulatory factor 7 (IRF-7)| Length = 503 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 6/44 (13%) Frame = +3 Query: 198 AAVKGLLPEWAVGELAAAC----SWPDAVRR--QMPWSGSLHFA 311 AA + L EW +GE+++ C W D R ++PW HFA Sbjct: 8 AAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWK---HFA 48
>OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinase)| (Obscurin-MLCK) (Obscurin-RhoGEF) Length = 7968 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Frame = -3 Query: 298 EPDHGIWRRTASGHEHA--AASSPTAHSGRSPFTAADASPVRKPSAILQVM*WPSSP 134 +PD W TA G HA S+ H+G F DA SA L V+ P P Sbjct: 4474 QPDDSDWTVTADGSHHALLLRSAQPHHAGEVTFACRDA----VASARLTVLGLPDPP 4526
>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) Length = 5085 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = -3 Query: 247 AASSPTAHSGRSPFTAADASPVRKP 173 AA++PTA + +SP + ASP ++P Sbjct: 598 AATAPTATASKSPVPSQQASPKKEP 622
>SPOT_SYNY3 (P74007) Probable guanosine-3',5'-bis(diphosphate)| 3'-pyrophosphohydrolase (EC 3.1.7.2) ((ppGpp)ase) (Penta-phosphate guanosine-3'-pyrophosphohydrolase) Length = 760 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/50 (32%), Positives = 22/50 (44%) Frame = -3 Query: 331 LQSPGVSAKCREPDHGIWRRTASGHEHAAASSPTAHSGRSPFTAADASPV 182 + S V + RE + + + S E ASSP H P T D SP+ Sbjct: 567 ITSNSVVNRLRENNVNNVKNSQSSQEVTLASSPQVHPPTPPATGKDNSPI 616
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 27.3 bits (59), Expect = 8.8 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = -3 Query: 322 PGVSAKCREPDHGIWRRTASGHEHAAASSPTAHSGRSPFTAAD-ASPVRKPSA 167 PG AK P ++ S + AAA+ P A SG +P AA A P KP A Sbjct: 127 PGAPAKPAAPAAPSAAKSGSAPKPAAAAKP-AFSGPTPGDAAKKAEPAAKPGA 178
>Y221_MYCTU (P96403) Hypothetical UPF0089 protein Rv0221/MT0231| Length = 469 Score = 27.3 bits (59), Expect = 8.8 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = -2 Query: 284 HLAPHGVRPRARRREL--ADGPLRQEPLHRRRRLARQETLGDLAGHVVALLA 135 H+ P +R RREL A G + PL+R L + LA H +A++A Sbjct: 84 HIRPWRLRAPGGRRELDEAVGEIASTPLNRDHPLWEMYFVEGLANHRIAVVA 135
>HRG_BOVIN (P33433) Histidine-rich glycoprotein (Histidine-proline-rich| glycoprotein) (HPRG) (Fragments) Length = 396 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/50 (30%), Positives = 23/50 (46%) Frame = -3 Query: 394 PPTTHMSFSPFVPWQSLA*LNLQSPGVSAKCREPDHGIWRRTASGHEHAA 245 PP H + S P+Q+ A L PG+ +C P G H+H++ Sbjct: 214 PPLEHKNHSDSPPFQARAPLPFPPPGL--RCPHPPFGTKGNHRPPHDHSS 261 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,925,799 Number of Sequences: 219361 Number of extensions: 573515 Number of successful extensions: 2175 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2168 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
