ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast61g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474151.1| Oryza sativa (japonica cultivar-group), predic... 190 2e-45
2dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA clon... 190 2e-45
3dbj|D83178.1| Hordeum vulgare mRNA for endonuclease, complete cds 153 5e-34
4dbj|AB028448.1| Hordeum vulgare Bnuc1 mRNA for nuclease I, compl... 143 5e-31
5emb|AJ311603.1|HVU311603 Hordeum vulgare mRNA for putative nucle... 117 3e-23
6emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4,... 113 5e-22
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
8ref|XM_550001.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.023
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
10dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
11dbj|AP002860.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
12dbj|AK071917.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.023
13dbj|AK059608.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.023
14gb|AY105439.1| Zea mays PCO064225 mRNA sequence 48 0.023
15gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.35
16dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
18dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
19dbj|AP004182.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
20dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 44 0.35
21dbj|AP004278.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
22dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
23ref|XM_477103.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
24gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 42 1.4
25ref|XM_284542.6| PREDICTED: Mus musculus hypothetical protein LO... 42 1.4
26dbj|AK079552.1| Mus musculus adult male hypothalamus cDNA, RIKEN... 42 1.4
27gb|AC126677.3| Mus musculus BAC clone RP24-156D14 from chromosom... 42 1.4
28dbj|AP005107.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
29dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
30dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
31dbj|AK120944.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
32gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial ... 40 5.5
33gb|AC136228.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
34gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
35gb|AC114637.9| Mus musculus chromosome 3, clone RP24-119G15, com... 40 5.5
36ref|XM_362563.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 5.5
37gb|AC164441.4| Mus musculus BAC clone CH25-660D15 from chromosom... 40 5.5
38gb|AC164086.3| Mus musculus BAC clone RP23-25E6 from chromosome ... 40 5.5
39emb|CR956405.10| Pig DNA sequence from clone CH242-240K6 on chro... 40 5.5
40gb|AC121797.3| Mus musculus BAC clone RP23-424C23 from chromosom... 40 5.5
41gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 5.5
42emb|BX640595.13| Zebrafish DNA sequence from clone CH211-117K11 ... 40 5.5
43gb|AC121254.2| Homo sapiens chromosome 3 clone RP11-284A4, compl... 40 5.5
44gb|AC015641.9| Homo sapiens chromosome 8, clone RP11-45O16, comp... 40 5.5
45gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.5
46gb|AC158338.1| Homo sapiens chromosome 3 clone WI2-3321H1, compl... 40 5.5
47dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
48gb|AC135352.6| Homo sapiens chromosome 8, clone RP11-369K16, com... 40 5.5
49dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.5
50dbj|AP005317.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
51dbj|AK106805.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.5
52gb|AY623658.2| Aeromicrobium erythreum putative transcriptional ... 40 5.5
53gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 5.5
54emb|AL137918.4|CNS01DWQ Human chromosome 14 DNA sequence BAC R-4... 40 5.5 
>ref|XM_474151.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 873

 Score =  190 bits (96), Expect = 2e-45
 Identities = 228/272 (83%)
 Strand = Plus / Plus

                                                                       
Query: 139 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 198
           |||||||||||||||||   |||||||||||||||||||||||||||   |||||| || 
Sbjct: 86  aggagggccactacatggtgtgcaagatcgccgagggtttcctgacgaaggaggcggcga 145

                                                                       
Query: 199 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 258
           |||||||||||| |||||| || | |||||||| ||||||||||||||   |||||||||
Sbjct: 146 cggcggtgaaggagctcctccccgggtgggccggcggcgagctcgcggaaacgtgctcgt 205

                                                                       
Query: 259 ggccggacgccgtgcggcgccagatgccgtggtccggctccctgcacttcgccgacaccc 318
           || ||||| ||| ||||  || |   | ||||||  || |||| ||||||||||||||||
Sbjct: 206 gggcggacaccgagcggttccggtaccggtggtcgagccccctccacttcgccgacaccc 265

                                                                       
Query: 319 ccggcgactgcaagttcagctacgccagggactgccacgggacgaaaggggagaaggaca 378
           ||||||||||| |||||| ||||||| |||| ||||||   || || || ||||||||||
Sbjct: 266 ccggcgactgccagttcaactacgcccgggattgccacaacacaaacggtgagaaggaca 325

                                           
Query: 379 tgtgcgtcgtcggaggcatcaacaactacacc 410
           |||| || |||||||  |||||||||||||||
Sbjct: 326 tgtgtgtggtcggagcgatcaacaactacacc 357
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>dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F11, full
           insert sequence
          Length = 1146

 Score =  190 bits (96), Expect = 2e-45
 Identities = 228/272 (83%)
 Strand = Plus / Plus

                                                                       
Query: 139 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 198
           |||||||||||||||||   |||||||||||||||||||||||||||   |||||| || 
Sbjct: 112 aggagggccactacatggtgtgcaagatcgccgagggtttcctgacgaaggaggcggcga 171

                                                                       
Query: 199 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 258
           |||||||||||| |||||| || | |||||||| ||||||||||||||   |||||||||
Sbjct: 172 cggcggtgaaggagctcctccccgggtgggccggcggcgagctcgcggaaacgtgctcgt 231

                                                                       
Query: 259 ggccggacgccgtgcggcgccagatgccgtggtccggctccctgcacttcgccgacaccc 318
           || ||||| ||| ||||  || |   | ||||||  || |||| ||||||||||||||||
Sbjct: 232 gggcggacaccgagcggttccggtaccggtggtcgagccccctccacttcgccgacaccc 291

                                                                       
Query: 319 ccggcgactgcaagttcagctacgccagggactgccacgggacgaaaggggagaaggaca 378
           ||||||||||| |||||| ||||||| |||| ||||||   || || || ||||||||||
Sbjct: 292 ccggcgactgccagttcaactacgcccgggattgccacaacacaaacggtgagaaggaca 351

                                           
Query: 379 tgtgcgtcgtcggaggcatcaacaactacacc 410
           |||| || |||||||  |||||||||||||||
Sbjct: 352 tgtgtgtggtcggagcgatcaacaactacacc 383
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>dbj|D83178.1| Hordeum vulgare mRNA for endonuclease, complete cds
          Length = 1180

 Score =  153 bits (77), Expect = 5e-34
 Identities = 113/125 (90%)
 Strand = Plus / Plus

                                                                       
Query: 287 gtggtccggctccctgcacttcgccgacacccccggcgactgcaagttcagctacgccag 346
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gtggtcccgctccctgcacttcgccgacacccccggcgactgcaagttcagctacgccag 338

                                                                       
Query: 347 ggactgccacgggacgaaaggggagaaggacatgtgcgtcgtcggaggcatcaacaacta 406
           |||||||||||  || || ||| | ||| || ||||||| ||||| | ||||||||||||
Sbjct: 339 ggactgccacgacaccaaggggaacaagaacgtgtgcgtggtcggggccatcaacaacta 398

                
Query: 407 caccg 411
           |||||
Sbjct: 399 caccg 403



 Score =  143 bits (72), Expect = 5e-31
 Identities = 114/128 (89%)
 Strand = Plus / Plus

                                                                       
Query: 139 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 198
           |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| | 
Sbjct: 131 aggagggccactacatgacctgcaagatcgccgacggtttcctgacgagcgaggcgttga 190

                                                                       
Query: 199 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 258
           ||| |||||||| |||||| |||  |||||||  |||||||||||||| || ||||||||
Sbjct: 191 cgggggtgaaggcgctcctcccgtcgtgggccaacggcgagctcgcggaggtgtgctcgt 250

                   
Query: 259 ggccggac 266
           || |||||
Sbjct: 251 gggcggac 258
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>dbj|AB028448.1| Hordeum vulgare Bnuc1 mRNA for nuclease I, complete cds
          Length = 1283

 Score =  143 bits (72), Expect = 5e-31
 Identities = 114/128 (89%)
 Strand = Plus / Plus

                                                                       
Query: 139 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 198
           ||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct: 159 aggaggggcactacatgacctgcaagatcgccgatggtttcctgacgagcgaggcatcgg 218

                                                                       
Query: 199 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 258
           ||||||||||||  |||||||||  |||||||  |||||||||||||| || |||| |||
Sbjct: 219 cggcggtgaaggacctcctgccgtcgtgggccaacggcgagctcgcggaggtgtgcgcgt 278

                   
Query: 259 ggccggac 266
           || |||||
Sbjct: 279 gggcggac 286



 Score =  131 bits (66), Expect = 2e-27
 Identities = 102/114 (89%)
 Strand = Plus / Plus

                                                                       
Query: 298 ccctgcacttcgccgacacccccggcgactgcaagttcagctacgccagggactgccacg 357
           ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 318 ccctgcacttcgccgacacccccggtgactgcaacttcagctacgccagggactgccacg 377

                                                                 
Query: 358 ggacgaaaggggagaaggacatgtgcgtcgtcggaggcatcaacaactacaccg 411
             || || ||| | |||||| ||||||| || |||| |||||||||||||||||
Sbjct: 378 acaccaaggggaacaaggacgtgtgcgtggtgggagccatcaacaactacaccg 431
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>emb|AJ311603.1|HVU311603 Hordeum vulgare mRNA for putative nuclease (bnuc2 gene)
          Length = 1139

 Score =  117 bits (59), Expect = 3e-23
 Identities = 110/127 (86%)
 Strand = Plus / Plus

                                                                       
Query: 139 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 198
           ||||||| |||||||||||||||||||||||||| ||||||||||||   ||||||||||
Sbjct: 138 aggaggggcactacatgacctgcaagatcgccgatggtttcctgacgaaggaggcgtcgg 197

                                                                       
Query: 199 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 258
           ||| ||||||||  ||||| |||  || ||||  |||||||||||||| || ||||||||
Sbjct: 198 cgggggtgaaggatctcctcccgtcgtcggccaacggcgagctcgcggaggtgtgctcgt 257

                  
Query: 259 ggccgga 265
           || ||||
Sbjct: 258 gggcgga 264



 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 94/112 (83%)
 Strand = Plus / Plus

                                                                       
Query: 300 ctgcacttcgccgacacccccggcgactgcaagttcagctacgccagggactgccacggg 359
           ||||||||||| ||||||||    ||||||||||||||||||||| ||||||||||||  
Sbjct: 299 ctgcacttcgctgacaccccaaaagactgcaagttcagctacgcccgggactgccacgac 358

                                                               
Query: 360 acgaaaggggagaaggacatgtgcgtcgtcggaggcatcaacaactacaccg 411
           || || ||| | ||||||  |||||| ||||| | ||| |||||||||||||
Sbjct: 359 accaaggggaacaaggacgcgtgcgtggtcggggccattaacaactacaccg 410
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>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06,
             complete sequence
          Length = 151506

 Score =  113 bits (57), Expect = 5e-22
 Identities = 144/173 (83%)
 Strand = Plus / Plus

                                                                         
Query: 172   agggtttcctgacgggcgaggcgtcggcggcggtgaaggggctcctgccggagtgggccg 231
             ||||||||||||||   |||||| || |||||||||||| |||||| || | ||||||||
Sbjct: 60308 agggtttcctgacgaaggaggcggcgacggcggtgaaggagctcctccccgggtgggccg 60367

                                                                         
Query: 232   tcggcgagctcgcggcggcgtgctcgtggccggacgccgtgcggcgccagatgccgtggt 291
              ||||||||||||||   ||||||||||| ||||| ||| ||||  || |   | |||||
Sbjct: 60368 gcggcgagctcgcggaaacgtgctcgtgggcggacaccgagcggttccggtaccggtggt 60427

                                                                  
Query: 292   ccggctccctgcacttcgccgacacccccggcgactgcaagttcagctacgcc 344
             |  || |||| ||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 60428 cgagccccctccacttcgccgacacccccggcgactgccagttcaactacgcc 60480



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 369   gagaaggacatgtgcgtcgtcggaggcatcaacaactacacc 410
             |||||||||||||| || |||||||  |||||||||||||||
Sbjct: 61417 gagaaggacatgtgtgtggtcggagcgatcaacaactacacc 61458



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 139   aggagggccactacatgacctgcaagatcgccgagg 174
             |||||||||||||||||   ||||||||||||||||
Sbjct: 60190 aggagggccactacatggtgtgcaagatcgccgagg 60225
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  113 bits (57), Expect = 5e-22
 Identities = 144/173 (83%)
 Strand = Plus / Plus

                                                                            
Query: 172      agggtttcctgacgggcgaggcgtcggcggcggtgaaggggctcctgccggagtgggccg 231
                ||||||||||||||   |||||| || |||||||||||| |||||| || | ||||||||
Sbjct: 33288047 agggtttcctgacgaaggaggcggcgacggcggtgaaggagctcctccccgggtgggccg 33288106

                                                                            
Query: 232      tcggcgagctcgcggcggcgtgctcgtggccggacgccgtgcggcgccagatgccgtggt 291
                 ||||||||||||||   ||||||||||| ||||| ||| ||||  || |   | |||||
Sbjct: 33288107 gcggcgagctcgcggaaacgtgctcgtgggcggacaccgagcggttccggtaccggtggt 33288166

                                                                     
Query: 292      ccggctccctgcacttcgccgacacccccggcgactgcaagttcagctacgcc 344
                |  || |||| ||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 33288167 cgagccccctccacttcgccgacacccccggcgactgccagttcaactacgcc 33288219



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 369      gagaaggacatgtgcgtcgtcggaggcatcaacaactacacc 410
                |||||||||||||| || |||||||  |||||||||||||||
Sbjct: 33289156 gagaaggacatgtgtgtggtcggagcgatcaacaactacacc 33289197



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 139      aggagggccactacatgacctgcaagatcgccgagg 174
                |||||||||||||||||   ||||||||||||||||
Sbjct: 33287929 aggagggccactacatggtgtgcaagatcgccgagg 33287964
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>ref|XM_550001.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1290

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                               
Query: 190 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 241
           ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| |||||
Sbjct: 177 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 228
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                   
Query: 190     aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 241
               ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| |||||
Sbjct: 1565424 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 1565475
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>dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0408F06
          Length = 137462

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                
Query: 190  aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 241
            ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| |||||
Sbjct: 2655 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 2706
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>dbj|AP002860.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0409B08
          Length = 134673

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                  
Query: 190    aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 241
              ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| |||||
Sbjct: 131072 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 131123
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>dbj|AK071917.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071I09, full
           insert sequence
          Length = 3171

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                               
Query: 190 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 241
           ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| |||||
Sbjct: 134 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 83
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>dbj|AK059608.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F03, full
           insert sequence
          Length = 1290

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                               
Query: 190 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 241
           ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| |||||
Sbjct: 177 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 228
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>gb|AY105439.1| Zea mays PCO064225 mRNA sequence
          Length = 1193

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 102/128 (79%)
 Strand = Plus / Plus

                                                                       
Query: 139 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 198
           |||||||||||  ||||  ||||||||||||||||   | |||| |||   ||||| |||
Sbjct: 208 aggagggccacatcatggtctgcaagatcgccgagaagtacctgtcggagaaggcggcgg 267

                                                                       
Query: 199 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 258
           |||||||| ||| ||| |||||||||| ||| | ||| |||||  || ||| |||| |||
Sbjct: 268 cggcggtgcaggcgctgctgccggagtcggcgggcggggagctgtcgacggtgtgcccgt 327

                   
Query: 259 ggccggac 266
           || |||||
Sbjct: 328 gggcggac 335



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 378 atgtgcgtcgtcggaggcatcaacaactacac 409
           |||||||||||||| |  ||||||||||||||
Sbjct: 447 atgtgcgtcgtcggggctatcaacaactacac 478
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>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08,
              complete sequence
          Length = 142196

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 325    actgcaagttcagctacgccag 346
              ||||||||||||||||||||||
Sbjct: 112943 actgcaagttcagctacgccag 112922
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 186      ggcgaggcgtcggcggcggtga 207
                ||||||||||||||||||||||
Sbjct: 23397164 ggcgaggcgtcggcggcggtga 23397185



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 306     ttcgccgacacccccggcgactgca 330
               ||||||| |||||||||||||||||
Sbjct: 5924436 ttcgccgtcacccccggcgactgca 5924460
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 141      gagggccactacatgacctgcaagat 166
                |||||||||||||| |||||||||||
Sbjct: 28863210 gagggccactacattacctgcaagat 28863235



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 193     cgtcggcggcggtgaaggggc 213
               |||||||||||||||||||||
Sbjct: 7803216 cgtcggcggcggtgaaggggc 7803236
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 325      actgcaagttcagctacgccag 346
                ||||||||||||||||||||||
Sbjct: 29334286 actgcaagttcagctacgccag 29334265



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 186      ggcgaggcgtcggcggcggtgaag 209
                ||||||||| ||||||||||||||
Sbjct: 21778643 ggcgaggcggcggcggcggtgaag 21778620



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 234     ggcgagctcgcggcggcgtg 253
               ||||||||||||||||||||
Sbjct: 4357349 ggcgagctcgcggcggcgtg 4357368
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>dbj|AP004182.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1199_H01
          Length = 107252

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 186   ggcgaggcgtcggcggcggtga 207
             ||||||||||||||||||||||
Sbjct: 78388 ggcgaggcgtcggcggcggtga 78409
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 62      ccggctgcttcaggccgtcctc 83
               ||||||||||||||||||||||
Sbjct: 5488685 ccggctgcttcaggccgtcctc 5488664
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>dbj|AP004278.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0468G03
          Length = 143918

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 141   gagggccactacatgacctgcaagat 166
             |||||||||||||| |||||||||||
Sbjct: 13254 gagggccactacattacctgcaagat 13279
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>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0453G03
          Length = 144480

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 186   ggcgaggcgtcggcggcggtga 207
             ||||||||||||||||||||||
Sbjct: 17061 ggcgaggcgtcggcggcggtga 17082
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>ref|XM_477103.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2292

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 306  ttcgccgacacccccggcgactgca 330
            ||||||| |||||||||||||||||
Sbjct: 1046 ttcgccgtcacccccggcgactgca 1022
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 195     tcggcggcggtgaaggggctc 215
               |||||||||||||||||||||
Sbjct: 3385402 tcggcggcggtgaaggggctc 3385382
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>ref|XM_284542.6| PREDICTED: Mus musculus hypothetical protein LOC620538 (LOC620538),
           mRNA
          Length = 5131

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 232 tcggcgagctcgcggcggcgtgctc 256
           |||||||||||||||||||| ||||
Sbjct: 100 tcggcgagctcgcggcggcgcgctc 76
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>dbj|AK079552.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length
           enriched library, clone:A230061D21 product:hypothetical
           TPR repeat/Ankyrin-repeat/Ankyrin repeat region circular
           profile/Yeast DNA-binding domain containing protein,
           full insert sequence
          Length = 2845

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 232 tcggcgagctcgcggcggcgtgctc 256
           |||||||||||||||||||| ||||
Sbjct: 101 tcggcgagctcgcggcggcgcgctc 77
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>gb|AC126677.3| Mus musculus BAC clone RP24-156D14 from chromosome 9, complete sequence
          Length = 152468

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 232   tcggcgagctcgcggcggcgtgctc 256
             |||||||||||||||||||| ||||
Sbjct: 37471 tcggcgagctcgcggcggcgcgctc 37495
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>dbj|AP005107.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0431E05
          Length = 146091

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 193   cgtcggcggcggtgaaggggc 213
             |||||||||||||||||||||
Sbjct: 17598 cgtcggcggcggtgaaggggc 17618
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>dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0091G06
          Length = 161851

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 193    cgtcggcggcggtgaaggggc 213
              |||||||||||||||||||||
Sbjct: 115714 cgtcggcggcggtgaaggggc 115734
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>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_A05
          Length = 120823

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 306   ttcgccgacacccccggcgactgca 330
             ||||||| |||||||||||||||||
Sbjct: 66884 ttcgccgtcacccccggcgactgca 66908
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>dbj|AK120944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037N02, full
            insert sequence
          Length = 2827

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 306  ttcgccgacacccccggcgactgca 330
            ||||||| |||||||||||||||||
Sbjct: 1276 ttcgccgtcacccccggcgactgca 1252
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>gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence
          Length = 114045

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   cggcggcggtgaaggggctc 215
             ||||||||||||||||||||
Sbjct: 24228 cggcggcggtgaaggggctc 24247



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   cggcggcggtgaaggggctc 215
             ||||||||||||||||||||
Sbjct: 23412 cggcggcggtgaaggggctc 23431
to top
>gb|AC136228.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0672D07,
              complete sequence
          Length = 136465

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 234    ggcgagctcgcggcggcgtg 253
              ||||||||||||||||||||
Sbjct: 111956 ggcgagctcgcggcggcgtg 111975
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>gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0012G21, complete sequence
          Length = 135750

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 186   ggcgaggcgtcggcggcggtgaag 209
             ||||||||| ||||||||||||||
Sbjct: 31052 ggcgaggcggcggcggcggtgaag 31029
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>gb|AC114637.9| Mus musculus chromosome 3, clone RP24-119G15, complete sequence
          Length = 179087

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    aggacagagagagggccaag 38
             ||||||||||||||||||||
Sbjct: 25862 aggacagagagagggccaag 25881
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>ref|XM_362563.1| Magnaporthe grisea 70-15 hypothetical protein (MG08146.4) partial
            mRNA
          Length = 1659

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 155  gacctgcaagatcgccgagg 174
            ||||||||||||||||||||
Sbjct: 1632 gacctgcaagatcgccgagg 1651
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>gb|AC164441.4| Mus musculus BAC clone CH25-660D15 from chromosome 13, complete
             sequence
          Length = 110316

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    cagcaaggacagagagaggg 33
             ||||||||||||||||||||
Sbjct: 61011 cagcaaggacagagagaggg 60992
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>gb|AC164086.3| Mus musculus BAC clone RP23-25E6 from chromosome 13, complete sequence
          Length = 214085

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    cagcaaggacagagagaggg 33
             ||||||||||||||||||||
Sbjct: 11296 cagcaaggacagagagaggg 11277
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>emb|CR956405.10| Pig DNA sequence from clone CH242-240K6 on chromosome 17, complete
             sequence
          Length = 135681

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    gctgcttcaggccgtcctcc 84
             ||||||||||||||||||||
Sbjct: 28464 gctgcttcaggccgtcctcc 28445
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>gb|AC121797.3| Mus musculus BAC clone RP23-424C23 from chromosome 3, complete sequence
          Length = 177109

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    aggacagagagagggccaag 38
             ||||||||||||||||||||
Sbjct: 19359 aggacagagagagggccaag 19340
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 265     acgccgtgcggcgccagatg 284
               ||||||||||||||||||||
Sbjct: 3428086 acgccgtgcggcgccagatg 3428067
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>emb|BX640595.13| Zebrafish DNA sequence from clone CH211-117K11 in linkage group 2,
             complete sequence
          Length = 121429

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 51    atggggttcctccggctgcttcag 74
             ||||| ||||||||||||||||||
Sbjct: 86090 atgggtttcctccggctgcttcag 86067
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>gb|AC121254.2| Homo sapiens chromosome 3 clone RP11-284A4, complete sequence
          Length = 25487

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cagcaaggacagagagaggg 33
            ||||||||||||||||||||
Sbjct: 7599 cagcaaggacagagagaggg 7618
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>gb|AC015641.9| Homo sapiens chromosome 8, clone RP11-45O16, complete sequence
          Length = 154580

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    cagcaaggacagagagaggg 33
             ||||||||||||||||||||
Sbjct: 17548 cagcaaggacagagagaggg 17567
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 227     ggccgtcggcgagctcgcgg 246
               ||||||||||||||||||||
Sbjct: 2769018 ggccgtcggcgagctcgcgg 2769037
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>gb|AC158338.1| Homo sapiens chromosome 3 clone WI2-3321H1, complete sequence
          Length = 43051

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   cagcaaggacagagagaggg 33
            ||||||||||||||||||||
Sbjct: 3656 cagcaaggacagagagaggg 3675
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 163      agatcgccgagggtttcctg 182
                ||||||||||||||||||||
Sbjct: 17310943 agatcgccgagggtttcctg 17310924
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>gb|AC135352.6| Homo sapiens chromosome 8, clone RP11-369K16, complete sequence
          Length = 133950

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     cagcaaggacagagagaggg 33
              ||||||||||||||||||||
Sbjct: 128591 cagcaaggacagagagaggg 128610
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 191     ggcgtcggcggcggtgaagg 210
               ||||||||||||||||||||
Sbjct: 1406836 ggcgtcggcggcggtgaagg 1406817
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>dbj|AP005317.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0579G08
          Length = 164452

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   agatcgccgagggtttcctg 182
             ||||||||||||||||||||
Sbjct: 83626 agatcgccgagggtttcctg 83607
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>dbj|AK106805.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-C03, full
           insert sequence
          Length = 935

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 234 ggcgagctcgcggcggcgtg 253
           ||||||||||||||||||||
Sbjct: 316 ggcgagctcgcggcggcgtg 297
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>gb|AY623658.2| Aeromicrobium erythreum putative transcriptional repressor and putative
             dehydrogenase/reductase genes, complete cds; erythromycin
             biosynthesis gene cluster, complete sequence; putative
             oxidoreductase and LipN genes, complete cds; monoamine
             oxidase gene, partial cds; and unknown gene
          Length = 61845

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   tcggcgagctcgcggcggcg 251
             ||||||||||||||||||||
Sbjct: 54079 tcggcgagctcgcggcggcg 54060
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 298    ccctgcacttcgccgacacccccggcga 325
              |||||| |||||||| ||||||||||||
Sbjct: 488293 ccctgcgcttcgccgtcacccccggcga 488266
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>emb|AL137918.4|CNS01DWQ Human chromosome 14 DNA sequence BAC R-442G21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 162016

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    ttcagcaaggacagagagag 31
             ||||||||||||||||||||
Sbjct: 67283 ttcagcaaggacagagagag 67264


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,417,914
Number of Sequences: 3902068
Number of extensions: 2417914
Number of successful extensions: 52463
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51265
Number of HSP's gapped (non-prelim): 1195
length of query: 411
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 389
effective length of database: 17,147,199,772
effective search space: 6670260711308
effective search space used: 6670260711308
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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