>Y4466_ARATH (Q9SB61) ZF-HD homeobox protein At4g24660 (AtHB-22)|
          Length = 220

 Score = 74.7 bits (182), Expect = 5e-14
 Identities = 31/57 (54%), Positives = 41/57 (71%), Gaps = 4/57 (7%)
 Frame = +1

Query: 232 KYKECMRNHAAAMGGQAFDGCGEYMPASP----DSLKCAACGCHRSFHRRAGSLTGG 390
           +Y+EC++NHA  +GG A DGC E+MP+      D+LKCAACGCHR+FHR+     GG
Sbjct: 48  RYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETESIGG 104

>Y5541_ARATH (Q9FKP8) ZF-HD homeobox protein At5g65410|
          Length = 279

 Score = 72.0 bits (175), Expect = 3e-13
 Identities = 29/50 (58%), Positives = 40/50 (80%), Gaps = 4/50 (8%)
 Frame = +1

Query: 232 KYKECMRNHAAAMGGQAFDGCGEYMPA----SPDSLKCAACGCHRSFHRR 369
           +++EC++N A  +GG A DGCGE+MPA    + D+LKCAACGCHR+FHR+
Sbjct: 74  RFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRK 123

>RECO_MYCPA (Q73Y16) DNA repair protein recO (Recombination protein O)|
          Length = 265

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 289 GCGEYMPASPDSLKCAACGCHRSFHRRAGSLTGGACP 399
           G   + PA  +  +CA  G HR+FH  AG   G  CP
Sbjct: 145 GIAGWAPALTECARCATPGPHRAFHVGAG---GSVCP 178

>ODP2_HAEIN (P45118) Dihydrolipoyllysine-residue acetyltransferase component of|
           pyruvate dehydrogenase complex (EC 2.3.1.12) (E2)
           (Dihydrolipoamide acetyltransferase component of
           pyruvate dehydrogenase complex)
          Length = 567

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 191 PTREAAEPGATPGPSTRSACATTRLPWAARPSTAA 295
           P   A+ P +T  P T +   T + P AA P T A
Sbjct: 187 PAESASAPASTSAPQTAAPATTAQAPQAAAPDTTA 221

>RECO_NOCFA (Q5YZU4) DNA repair protein recO (Recombination protein O)|
          Length = 256

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 301 YMPASPDSLKCAACGCHRSFHRRAGSLTGGACPP 402
           + PA  +  KCA  G HR+FH  AG      C P
Sbjct: 149 WAPALDECAKCATPGPHRAFHVAAGGAVCVHCRP 182

>RECO_MYCTU (P65983) DNA repair protein recO (Recombination protein O)|
          Length = 265

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 289 GCGEYMPASPDSLKCAACGCHRSFHRRAGSLTGGACPP 402
           G   + PA  +  +CA  G HR+FH   G      C P
Sbjct: 145 GIAGWAPALTECARCATPGPHRAFHIATGGSVCAHCRP 182

>RECO_MYCBO (P65984) DNA repair protein recO (Recombination protein O)|
          Length = 265

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 289 GCGEYMPASPDSLKCAACGCHRSFHRRAGSLTGGACPP 402
           G   + PA  +  +CA  G HR+FH   G      C P
Sbjct: 145 GIAGWAPALTECARCATPGPHRAFHIATGGSVCAHCRP 182

>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 191 PTREAAEPGATPGPSTRSA-CATTRLPWAARPSTAAG 298
           P   AA PGATPG +T SA  A+T  P A+  + + G
Sbjct: 33  PPPSAASPGATPGSATASAERASTAAPVASPAAPSPG 69

>CT062_HUMAN (Q4KN68) Protein C20orf62|
          Length = 170

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 323 ESGEAGMYSPQPSKAWPPMAAAWLRMH 243
           ES   G+YSP P   W P A ++   H
Sbjct: 15  ESPHPGVYSPHPQGGWQPTADSYREWH 41

>ZN533_MOUSE (Q8BXJ8) Zinc finger protein 533|
          Length = 482

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +2

Query: 212 PGATPGPSTRSACATTRLPWAARPST 289
           PG  P  ST SAC TT LP   R  T
Sbjct: 88  PGPGPNTSTGSACHTTTLPALVRTPT 113

>RECO_MYCLE (Q9CCN0) DNA repair protein recO (Recombination protein O)|
          Length = 268

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 289 GCGEYMPASPDSLKCAACGCHRSFHRRAGSLTGGACPP 402
           G   + PA     +CA  G HR+FH  AG      C P
Sbjct: 145 GIAGWAPALTACARCATPGPHRAFHIAAGGSVCVHCRP 182

>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)|
          Length = 705

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 191 PTREAAEPGATPGPSTRSACATTRLPWAARPS 286
           P   A  PGATPGP T +A  ++ +  AA P+
Sbjct: 33  PPPGAHSPGATPGPGTATAERSSGVAPAASPA 64

>GPMI_AGRT5 (Q8UAA5) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (iPGM)
          Length = 505

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -2

Query: 306 HVL--PAAVEGLAAHGSRVVAHALLVLGPGVAPGSAASLV 193
           H+L   AAV+ + +HG +VV HA +  G  VAP SA   V
Sbjct: 126 HILHGQAAVKLMVSHGLKVVVHA-ITDGRDVAPQSAEDFV 164

>PDLI7_CHICK (Q679P3) PDZ and LIM domain protein 7 (LIM mineralization protein)|
          Length = 416

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +2

Query: 212 PGATPGPSTRSACATTRLPWAARPSTA 292
           P ATPGP       T+R PWA  PS A
Sbjct: 175 PAATPGP-------TSRPPWAVDPSFA 194

>USH2A_HUMAN (O75445) Usherin precursor (Usher syndrome type-2A protein) (Usher|
            syndrome type IIa protein)
          Length = 5202

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 262  AAMGGQAFDGCGE-YMPASPDSLKCAACGCHRS 357
            A++ GQ  D C + Y    P + +C  C CH S
Sbjct: 975  ASIAGQRCDQCKDHYFGFDPQTGRCQPCNCHLS 1007

>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 191 PTREAAEPGATPGPSTRSA-CATTRLPWAARPSTAAG 298
           P   AA PGATPG +  SA  A+T  P A+  + + G
Sbjct: 33  PPPSAASPGATPGSAAASAERASTAAPVASPAAPSPG 69

>LEU3_SYNPX (Q7U840) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 357

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 268 MGGQAFDGCGEYMPASP-DSLKCA 336
           +GG A D CGE +PAS  D+ K A
Sbjct: 44  IGGSAIDACGEPLPASTLDACKAA 67

>KCNK9_RAT (Q9ES08) Potassium channel subfamily K member 9 (Acid-sensitive|
           potassium channel protein TASK-3) (TWIK-related
           acid-sensitive K(+) channel 3) (Two pore potassium
           channel KT3.2)
          Length = 396

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 191 PTREAAEPGATPGPSTRSACAT 256
           P   AA   ATPGPSTR+  AT
Sbjct: 327 PAVAAAAAAATPGPSTRNVRAT 348


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,806,631
Number of Sequences: 219361
Number of extensions: 573294
Number of successful extensions: 2135
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2131
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)