ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast61g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VACHT_RAT (Q62666) Vesicular acetylcholine transporter (VAChT) (... 28 4.1
2VACHT_MOUSE (O35304) Vesicular acetylcholine transporter (VAChT)... 28 5.4
3SPS_MAIZE (P31927) Sucrose-phosphate synthase (EC 2.4.1.14) (UDP... 27 9.2

>VACHT_RAT (Q62666) Vesicular acetylcholine transporter (VAChT) (Solute|
           carrier family 18 member 3) (rVAT)
          Length = 530

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 121 VRRTWRPTCGAPSLA--VAYLATSSAPLKG*IGAAAMMRPR 237
           V   W PT   P+LA   AYLA +SA       A +++RPR
Sbjct: 74  VSEVWEPTLPPPTLANASAYLANTSASPTAAGSARSILRPR 114



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>VACHT_MOUSE (O35304) Vesicular acetylcholine transporter (VAChT) (Solute|
           carrier family 18 member 3)
          Length = 530

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 121 VRRTWRPTCGAPSLA--VAYLATSSAPLKG*IGAAAMMRPR 237
           +   W PT   P+LA   AYLA +SA       A +++RPR
Sbjct: 74  ISEVWEPTLPPPTLANASAYLANTSASPTAAGSARSILRPR 114



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>SPS_MAIZE (P31927) Sucrose-phosphate synthase (EC 2.4.1.14)|
           (UDP-glucose-fructose-phosphate glucosyltransferase)
          Length = 1068

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 210 DSALQRRGAGG*VGNGERWSATSGA-PRSAH 121
           DS    RGAGG  G G+  S T  A PR AH
Sbjct: 16  DSHTSSRGAGGGGGGGDPRSPTKAASPRGAH 46


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,794,220
Number of Sequences: 219361
Number of extensions: 427594
Number of successful extensions: 1039
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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