>U2508_MOUSE (Q91YQ7) Protein UNQ2508/PRO5996 homolog|
          Length = 393

 Score = 76.3 bits (186), Expect = 3e-14
 Identities = 44/145 (30%), Positives = 80/145 (55%), Gaps = 7/145 (4%)
 Frame = +3

Query: 6   ALSKYLKVLEKSFNTDV-----SKAYRNVDFEDSTVNKIIANHFYRQGLFDLGDSFVHEC 170
           ++S+  K ++++F++++        + + + +   +   I  H Y+QG+  + +    E 
Sbjct: 85  SVSRVGKAIDRNFDSEICGVVSDAVWDSREKQQQILQMAIVEHLYQQGMLSVAEELCQES 144

Query: 171 GESDETYLKLPFQEMYGILEAMKARNLEPALTWAANNHDKLLQNSSMLELKLHSLQSVEI 350
             + +   K PF E+  ILEA+  ++L PAL WA ++  +LL+ +S LE KLH L  + +
Sbjct: 145 TLNVDLDFKQPFLELNRILEALHEQDLGPALEWAVSHRQRLLELNSSLEFKLHRLHFIRL 204

Query: 351 LTKG--RRDDALQYARTHLVPFASL 419
           L  G  ++ +AL YAR H  PFA L
Sbjct: 205 LAGGPEKQLEALSYAR-HFQPFARL 228

>U2508_HUMAN (Q96G75) Protein UNQ2508/PRO5996|
          Length = 393

 Score = 75.9 bits (185), Expect = 4e-14
 Identities = 44/145 (30%), Positives = 79/145 (54%), Gaps = 7/145 (4%)
 Frame = +3

Query: 6   ALSKYLKVLEKSFNTDVSKAYRNV-----DFEDSTVNKIIANHFYRQGLFDLGDSFVHEC 170
           ++S+  K ++++F++++     +      + +   +   I  H Y+QG+  + +    E 
Sbjct: 85  SVSRVGKAIDRNFDSEICGVVSDAVWDAREQQQQILQMAIVEHLYQQGMLSVAEELCQES 144

Query: 171 GESDETYLKLPFQEMYGILEAMKARNLEPALTWAANNHDKLLQNSSMLELKLHSLQSVEI 350
             + +   K PF E+  ILEA+  ++L PAL WA ++  +LL+ +S LE KLH L  + +
Sbjct: 145 TLNVDLDFKQPFLELNRILEALHEQDLGPALEWAVSHRQRLLELNSSLEFKLHRLHFIRL 204

Query: 351 LTKG--RRDDALQYARTHLVPFASL 419
           L  G  ++ +AL YAR H  PFA L
Sbjct: 205 LAGGPAKQLEALSYAR-HFQPFARL 228

>YIJ7_YEAST (P40492) Hypothetical 59.9 kDa protein in SGA1-KTR7 intergenic|
           region
          Length = 516

 Score = 35.4 bits (80), Expect = 0.055
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +3

Query: 243 RNLEPALTWAANNHDKLLQNSSMLELKLHSLQSVEILTKGRRDDALQYARTHLVPF 410
           RNL P ++W   N   L + SS+LE +    + +E+L      DA+   +  L+PF
Sbjct: 202 RNLLPLISWINENKKTLTKKSSILEFQARLQEYIELLKVDNYTDAIVCFQRFLLPF 257

>NRIP1_MOUSE (Q8CBD1) Nuclear receptor-interacting protein 1 (Nuclear factor|
           RIP140) (Receptor-interacting protein 140)
          Length = 1161

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
 Frame = +3

Query: 90  STVNKIIANHFYRQGLFDLGDSFVHECGESDETYLKLPFQEMYGILEAMKARNLEPALTW 269
           + +NK  A H      F+L  S    C  +  T     +Q   G+L   KAR L+ +  W
Sbjct: 35  TAINKKSAGHKEEDQNFNLSGSAFPSCQSNGPTVSTQTYQGS-GMLHLKKARLLQSSEDW 93

Query: 270 AANNHDKLLQNSSMLELKLHSLQS--VEILTKGRRDDAL 380
            A    +L  +   L +K  +L +  V+ + KG++D  L
Sbjct: 94  NAAKRKRLSDSIVNLNVKKEALLAGMVDSVPKGKQDSTL 132

>NRIP1_HUMAN (P48552) Nuclear receptor-interacting protein 1 (Nuclear factor|
           RIP140) (Receptor-interacting protein 140)
          Length = 1158

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
 Frame = +3

Query: 90  STVNKIIANHFYRQGLFDLGDSFVHECGESDETYLKLPFQEMYGILEAMKARNLEPALTW 269
           + V+K  A H      F++  S    C +S+   L     +  G+L   KAR L+ +  W
Sbjct: 35  TAVDKKSAGHNEEDQNFNISGSAFPTC-QSNGPVLNTHTYQGSGMLHLKKARLLQSSEDW 93

Query: 270 AANNHDKLLQNSSMLELKLHSLQS--VEILTKGRRDDAL 380
            A    +L  +   L +K  +L +  V+ + KG++D  L
Sbjct: 94  NAAKRKRLSDSIMNLNVKKEALLAGMVDSVPKGKQDSTL 132

>YAMB_SCHPO (Q10064) Hypothetical protein C1F5.11c in chromosome I|
          Length = 3655

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 18/53 (33%), Positives = 31/53 (58%)
 Frame = +3

Query: 261 LTWAANNHDKLLQNSSMLELKLHSLQSVEILTKGRRDDALQYARTHLVPFASL 419
           L +  N    L +NSS+ ELK+ +L  ++  +   RD+  QYA++ ++ F SL
Sbjct: 56  LDFLRNTEVNLYRNSSVNELKIEALTLIQ--SCAHRDEFKQYAQSCVLSFISL 106

>RUMA_NITMU (Q2Y6W3) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)|
           (23S rRNA(M-5-U1939)-methyltransferase)
          Length = 439

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 15/69 (21%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = +3

Query: 111 ANHFYRQGLFDLGDSFVHECGESDETYLKLPFQEMYGILEAMKARNLEP-ALTWAANNHD 287
           +  F    LF++ +S++ E G+ D+  +  P +    ++ A++ + L+P  + + + N  
Sbjct: 335 STRFMEANLFEIDESWMREQGDFDKMLIDPPREGAVAVVTALEEKQLKPWRIVYVSCNPA 394

Query: 288 KLLQNSSML 314
            L +++S+L
Sbjct: 395 TLARDASVL 403

>RP54_XANCV (P77998) RNA polymerase sigma-54 factor|
          Length = 479

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 150 DSFVHECGESDETYLKLPFQEMYGILEAMKAR 245
           ++ +  CGESD  YL+   QE   +L++++AR
Sbjct: 307 ENLIRSCGESDAGYLRGQLQEARWLLKSLEAR 338

>VN34_ROTBU (P04514) Nonstructural RNA-binding protein 34 (NS34) (NCVP4)|
           (NS2/VP9)
          Length = 313

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +3

Query: 129 QGLFDLGDSFVHECGESDETYLKLPFQEMYGILEAMKARNLEPALTWAANNHDKLLQNSS 308
           +G  ++ DSFV E  E D    K  + ++    E++K R  E   TW        +Q + 
Sbjct: 149 RGAVEVDDSFVEEKMEVDTVDWKSRYDQLERRFESLKQRVNEKYTTW--------VQKAK 200

Query: 309 MLELKLHSLQSV 344
            +   ++SLQ+V
Sbjct: 201 KVNENMYSLQNV 212

>MURC_BARQU (Q6G125) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 475

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 81  FEDSTVNKIIANHFYRQGLFDLGDSFVHECGESDETYLKLP 203
           F+   +N  I N +        GD  V E  ESD T+LKLP
Sbjct: 134 FDPMVINGGIINAYGTNARMGSGDWMVVEADESDGTFLKLP 174

>MURC_RHOPA (P61682) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 467

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 78  DFEDSTVNKIIANHFYRQGLFDLGDSFVHECGESDETYLKLP 203
           D + + +N  I N +        GD  V E  ESD T+LKLP
Sbjct: 133 DLDPTVINGGIINAYGTNARLGGGDWMVVEADESDGTFLKLP 174

>MURC_BARHE (Q6G2Q6) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 475

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 81  FEDSTVNKIIANHFYRQGLFDLGDSFVHECGESDETYLKLP 203
           F+   +N  I N +        GD  V E  ESD T+LKLP
Sbjct: 134 FDPMVINGGIINAYGTNARMGEGDWMVVEADESDGTFLKLP 174

>SEC8_YEAST (P32855) Exocyst complex component SEC8|
          Length = 1065

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
 Frame = +3

Query: 63   AYRNVDFEDSTVNKIIANHFY------RQGLFD-LGDSFVHECGESD-ETYLKLPF-QEM 215
            AYRN+  E S +N  +  +FY         LF+ + D+ +  C   D +T L+L F +EM
Sbjct: 944  AYRNLSSEPSKINMNVTMNFYSLCGSSEAELFEYIKDNELPHCSVEDLKTILRLQFSEEM 1003

Query: 216  YGILEAMKARNLEPALTWAANNHDKLLQNSSMLE 317
            +  L+     + + ++  +   + + L+  S LE
Sbjct: 1004 HRQLKRQSTSSTKGSIKPSNKRYTEALEKLSNLE 1037

>MURC_BRAJA (Q89FU8) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 467

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 84  EDSTVNKIIANHFYRQGLFDLGDSFVHECGESDETYLKLP 203
           + + +N  I N +        GD  V E  ESD T+LKLP
Sbjct: 135 DPTVINGGIINAYGSNARLGAGDWMVVEADESDGTFLKLP 174

>ATM_YARLI (Q6CAD2) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)|
            (DNA-damage checkpoint kinase TEL1) (Telomere length
            regulation protein 1) (ATM homolog)
          Length = 2282

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
 Frame = +3

Query: 54   VSKAYRNVDFEDSTVNKIIANHFYRQGLFDLGDSFVHECGESDETYLKLPFQEMYGILE- 230
            VSKA      +D   + I+   F R   + LGD    + G S  TY  +P     G++E 
Sbjct: 1964 VSKALLKGGKDDMRQDAIMEQVFCRVNQYFLGDPETRKRGLSIRTYNVVPMGPRAGMIEF 2023

Query: 231  AMKARNLEPALT--WAANNHDKLLQNSSMLELKLHSLQSVEILTKGRRDDALQYARTHLV 404
                 +L+ AL      ++ D L   + M         +V   +  RR + L+   TH+ 
Sbjct: 2024 VANTESLQAALVPLHEKDDWDYLTGRTKM--------SAVAKESNSRRVEVLEEIYTHVT 2075

Query: 405  PFAS 416
            P  S
Sbjct: 2076 PVMS 2079

>NAL12_HUMAN (P59046) NACHT-, LRR- and PYD-containing protein 12|
           (PYRIN-containing APAF1-like protein 7) (Monarch-1)
           (Regulated by nitric oxide)
          Length = 1061

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
 Frame = +3

Query: 177 SDETYLKLPFQEMYGILEAMKARNLEPALTWAANNHDK--LLQ------NSSMLELKLHS 332
           S+ ++L L  + ++G+L      +LE +L W  + H K  LLQ       S    L+  S
Sbjct: 551 SERSFLALTSRFLFGLLNEETRSHLEKSLCWKVSPHIKMDLLQWIQSKAQSDGSTLQQGS 610

Query: 333 LQSVEILTKGRRDDALQYARTH 398
           L+    L + + ++ +Q A +H
Sbjct: 611 LEFFSCLYEIQEEEFIQQALSH 632

>P210L_MOUSE (Q9D2F7) Nuclear pore membrane glycoprotein 210-like precursor|
            (Nucleoporin 210 kDa-like)
          Length = 1881

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = -2

Query: 243  LLSSLQVFHTSPGMAISG 190
            +L SL+VFH+SP +A+SG
Sbjct: 1716 VLESLEVFHSSPFLAVSG 1733

>YK82_SCHPO (Q9HGP4) Hypothetical bromodomain protein C631.02|
          Length = 727

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +3

Query: 78  DFEDST---VNKIIANHFYRQG-LFDLGDSFVHECGESDETYLKLPFQEMYGILEAMKAR 245
           DF+  T   ++ +  +++Y    +FD GD F+ + GE  E  +     ++   L+AMK+R
Sbjct: 499 DFDSETYMGMSSVNTDYYYGDNEVFDSGDEFLEDDGEEFEA-VNRQIHKLQSTLQAMKSR 557

>TRUA_CHLMU (Q9PJT0) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 267

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
 Frame = -2

Query: 309 LSYSATAYHGY-WQPK*AQAQGFLLSSLQ-VFHTSPGMAISGKSRLIHRTRGQRSLRDQR 136
           ++Y  TAY G+ +QP     Q  L + LQ +  T   +  SG++      +GQ +     
Sbjct: 9   IAYQGTAYSGWQYQPNALSIQEVLETLLQKISRTRISVIASGRTDAGVHAQGQVAH---- 64

Query: 135 GPGDRNDSLLSYLLCCPQNPHFCMP 61
                         CCP +PHF  P
Sbjct: 65  -------------FCCPDHPHFSDP 76

>YCJ5_SCHPO (Q9Y7T1) Hypothetical protein C63.05 in chromosome III|
          Length = 323

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 342 VEILTKGRRDDALQYARTHLVPFASL 419
           VE  TKG R  A+QYA+TH   F S+
Sbjct: 74  VEQWTKGDRLKAVQYAKTHYETFLSI 99


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,640,194
Number of Sequences: 219361
Number of extensions: 999567
Number of successful extensions: 3081
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3077
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)