ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast61f03 |
|---|---|
| Clone Library Name | barley_pub |
>OXRP_CRIGR (Q60432) 150 kDa oxygen-regulated protein precursor (Orp150)| (Hypoxia up-regulated 1) (170 kDa glucose-regulated protein) Length = 999 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = -3 Query: 397 DAGNAREEPEEERSGALEEDGVGWA*RERERVGRDVSGCRPGPQGAPPAPE 245 DA E+P+E+ SG E ++ E G+ GP+G PPAPE Sbjct: 644 DAAPEGEKPDEKESGGKSEA------QKPEEKGQS------GPEGVPPAPE 682
>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein| Length = 977 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = -3 Query: 391 GNAREEPEEERS-GALEEDGVGWA*RERERVGRDVSGCRPGPQGAPP 254 G+ R P+ E G + D G A +E+ R R RP P GAPP Sbjct: 126 GSLRSPPDSEAYYGETDSDADGPATQEKPRRPRRRGPTRPTPPGAPP 172
>MLF3_YEAST (P32047) Protein MLF3 (Multicopy suppressor of leflunomide| sensitivity 3) Length = 452 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +1 Query: 64 HAAAVTDTTNAAPSSGFTTTGSNGE 138 H+AA T N ++G TTT SNGE Sbjct: 194 HSAATRPTLNNINNTGMTTTTSNGE 218
>MELPH_MOUSE (Q91V27) Melanophilin (Exophilin-3) (Leaden protein)| (Synaptotagmin-like protein 2a) (Slac2-a) (Slp homolog lacking C2 domains a) Length = 590 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = -3 Query: 376 EPEEERSGALEEDGVGWA*RERERVGRDVSGCRPGPQGAPPAP 248 EP E + +LE +G+ E G GCRP P+ P +P Sbjct: 229 EPYSEDTTSLEPEGL-------EETGARALGCRPSPEVQPCSP 264
>DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13)| Length = 302 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/12 (83%), Positives = 11/12 (91%) Frame = -3 Query: 283 CRPGPQGAPPAP 248 C+PGPQGAP AP Sbjct: 103 CQPGPQGAPGAP 114
>DPOL_HHV21 (P07918) DNA polymerase (EC 2.7.7.7)| Length = 1240 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = -3 Query: 391 GNAREEPEEERSGALEEDGVGWA*RERERVGRDVSGCRPGPQGA 260 GN E+ +++ G +EDG ERE V R+ G G QGA Sbjct: 668 GNGDEDKDDDEDG--DEDG-----DEREEVARETGGRHVGYQGA 704
>FA43B_HUMAN (Q6ZT52) Protein FAM43B| Length = 329 Score = 28.1 bits (61), Expect = 5.3 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Frame = -3 Query: 382 REEPEEERSGALEEDGVGWA*RERERV---GRDVSGC--RPGPQGAPPAPERR 239 +EE EEE EE G RER V R++ C R P PPA RR Sbjct: 264 QEEDEEEEEDDAEEQEGGVPQRERPEVLSLARELRTCSLRGAPAPPPPAQPRR 316
>SMAD6_CHICK (Q9W734) Mothers against decapentaplegic homolog 6 (SMAD 6)| (Mothers against DPP homolog 6) (Smad6) Length = 431 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 6/56 (10%) Frame = -3 Query: 397 DAGNAREEPEEERSGALEEDGVGWA*--RERERVGRDVSGC----RPGPQGAPPAP 248 D G+ + E + A+ +G A R +E GR V C RPGP+ PP P Sbjct: 23 DGGDGNGQSSERNATAVTAEGQRMAQPRRAQEGEGRPVRCCLFAERPGPELPPPPP 78
>CEBPB_BOVIN (O02755) CCAAT/enhancer-binding protein beta (C/EBP beta)| Length = 348 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = +1 Query: 31 FSPY*EVVYSPHAAAVT---DTTNAAPSSGFTTTGSNGE 138 FSPY E + +P A A T DT AAPS+ S+G+ Sbjct: 75 FSPYLEPLGAPQAPAPTTASDTFEAAPSAPAPVPASSGQ 113
>RXRB_HUMAN (P28702) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)| Length = 533 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = -3 Query: 394 AGNAREEPEEERSGALEEDGVGWA*RERERVGRDVSGCRPGPQGAPP 254 AG ++ PE E G DG+G + R+ D S P PQG PP Sbjct: 54 AGGEQQTPEPE-PGEAGRDGMGDSGRDSR--SPDSSSPNPLPQGVPP 97
>OXRP_RAT (Q63617) 150 kDa oxygen-regulated protein precursor (Orp150)| (Hypoxia up-regulated 1) Length = 999 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = -3 Query: 397 DAGNAREEPEEERSGALEEDGVGWA*RERERVGRDVSGCRPGPQGAPPAPE 245 DA E P+E+ SG E A + E+ + GP+G PPAPE Sbjct: 644 DAAREGETPDEKESGDKSE-----AQKPNEKG-------QAGPEGVPPAPE 682
>PEP_DROME (P41073) Zinc finger protein on ecdysone puffs| Length = 716 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 7/55 (12%) Frame = -3 Query: 391 GNAREEPEEERSGALEEDGVGWA*RERERVGRDVSG----CRPGPQGAP---PAP 248 G E +EE +EEDG G E E ++ G P P+ AP PAP Sbjct: 594 GEGEGEGDEEAEAEVEEDGAGQDNGEEEMEAQEEEGQEGEQEPEPEPAPVQTPAP 648
>CEBPB_HUMAN (P17676) CCAAT/enhancer-binding protein beta (C/EBP beta) (Nuclear| factor NF-IL6) (Transcription factor 5) Length = 345 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = +1 Query: 31 FSPY*EVVYSPHA---AAVTDTTNAAPSSGFTTTGSNGE 138 FSPY E + +P A A TDT AAP + S+G+ Sbjct: 75 FSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQ 113 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,349,047 Number of Sequences: 219361 Number of extensions: 398657 Number of successful extensions: 1576 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1460 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1575 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
