ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast61f02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY372819.1| Sorghum bicolor P-glycoprotein 1 (PGP1) gene, PGP1-Dw3-T allele, complete cds Length = 6827 Score = 507 bits (256), Expect = e-141 Identities = 364/400 (91%) Strand = Plus / Plus Query: 1 ctcatcggcatgtcctccgcggcgctgctcttcaacaccgtgcagcacctcttctgggac 60 ||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||| Sbjct: 5171 ctcatcggcatgtcctccgcggcgctgctgttcaacacggtgcagcacgtgttctgggac 5230 Query: 61 acggtcggcgagaacctgaccaaacgcgtgcgcgagaagatgctcacggcggtgctccgc 120 ||||||||||||||||| || || || ||||||||||||||| || | || ||||||||| Sbjct: 5231 acggtcggcgagaacctcacgaagcgtgtgcgcgagaagatgttcgccgccgtgctccgc 5290 Query: 121 aacgagatggcctggttcgacatggaggccaacgccagcgcgcacatagccgccaggctc 180 |||||||| |||||||||||| || | ||||||||||||| | | |||||||||||| Sbjct: 5291 aacgagatcgcctggttcgacgccgacgagaacgccagcgcgcgcgtcgccgccaggctc 5350 Query: 181 gcgctggacgcccagaacgtgcgctccgccatcggggaccgcatctccgtcatcgtgcag 240 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 5351 gcgctcgacgcccagaacgtgcgctccgccatcggggaccgtatctccgtcatcgtccag 5410 Query: 241 aactcggcgcttatgctcgtcgcatgcaccgccgggttcgtcctgcagtggcgcctcgcg 300 ||||||||||| ||||||||||| |||||||| || |||||||| ||||||||||||||| Sbjct: 5411 aactcggcgctcatgctcgtcgcctgcaccgcgggcttcgtcctccagtggcgcctcgcg 5470 Query: 301 ctcgtgctcctcgccgtcttcccgctcgtcgttggcgccaccgtgctgcagaagatgttc 360 |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct: 5471 ctcgtgctcctcgccgtcttcccgctcgtcgtggccgccaccgtgctgcagaagatgttc 5530 Query: 361 atgaagggcttctccggtgacctggaaggcgcgcacgcca 400 |||||||||||||| || |||||||| | ||||||||||| Sbjct: 5531 atgaagggcttctcgggggacctggaggccgcgcacgcca 5570
>gb|AY366085.1| Zea mays cultivar B73 PGP1 (pgp1) gene, complete cds Length = 7139 Score = 500 bits (252), Expect = e-138 Identities = 363/400 (90%) Strand = Plus / Plus Query: 1 ctcatcggcatgtcctccgcggcgctgctcttcaacaccgtgcagcacctcttctgggac 60 ||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||| Sbjct: 5106 ctcatcggcatgtcctccgcggcgctgctgttcaacacggtgcagcacgtgttctgggac 5165 Query: 61 acggtcggcgagaacctgaccaaacgcgtgcgcgagaagatgctcacggcggtgctccgc 120 ||||| ||||||||| ||||||| || ||||||||||||||| || | || ||| ||||| Sbjct: 5166 acggtgggcgagaacttgaccaagcgggtgcgcgagaagatgttcgccgccgtgttccgc 5225 Query: 121 aacgagatggcctggttcgacatggaggccaacgccagcgcgcacatagccgccaggctc 180 |||||||| |||||||||||| ||| | ||||||||||||| | | |||||||||| Sbjct: 5226 aacgagatcgcctggttcgacgcggacgagaacgccagcgcgcgcgtgaccgccaggcta 5285 Query: 181 gcgctggacgcccagaacgtgcgctccgccatcggggaccgcatctccgtcatcgtgcag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 5286 gcgctggacgcccagaacgtgcgctccgccatcggggaccgcatctccgtcatcgtccag 5345 Query: 241 aactcggcgcttatgctcgtcgcatgcaccgccgggttcgtcctgcagtggcgcctcgcg 300 ||||||||||| ||||| || || |||||||| ||||||||||| ||||||||||||||| Sbjct: 5346 aactcggcgctgatgctggtggcctgcaccgcggggttcgtcctccagtggcgcctcgcg 5405 Query: 301 ctcgtgctcctcgccgtcttcccgctcgtcgttggcgccaccgtgctgcagaagatgttc 360 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 5406 ctcgtgctcctcgccgtgttcccgctcgtcgtgggcgccaccgtgctgcagaagatgttc 5465 Query: 361 atgaagggcttctccggtgacctggaaggcgcgcacgcca 400 |||||||||||||| || |||||||| | ||||||||||| Sbjct: 5466 atgaagggcttctcgggggacctggaggccgcgcacgcca 5505
>ref|XM_483820.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2982 Score = 452 bits (228), Expect = e-124 Identities = 363/408 (88%) Strand = Plus / Plus Query: 1 ctcatcggcatgtcctccgcggcgctgctcttcaacaccgtgcagcacctcttctgggac 60 |||||||||||||||||||| || |||||||||||||| || |||||||||||||||||| Sbjct: 1239 ctcatcggcatgtcctccgccgccctgctcttcaacactgtccagcacctcttctgggac 1298 Query: 61 acggtcggcgagaacctgaccaaacgcgtgcgcgagaagatgctcacggcggtgctccgc 120 || |||||||||||||| ||||| ||||| ||||||| ||||||| | || ||||||||| Sbjct: 1299 accgtcggcgagaacctcaccaagcgcgtccgcgagaggatgctcgccgccgtgctccgc 1358 Query: 121 aacgagatggcctggttcgacatggaggccaacgccagcgcgcacatagccgccaggctc 180 |||||||| ||||||||||||||||||| |||| ||||||| | ||| ||||||||||| Sbjct: 1359 aacgagatcgcctggttcgacatggaggacaactccagcgcccgcatcgccgccaggctg 1418 Query: 181 gcgctggacgcccagaacgtgcgctccgccatcggggaccgcatctccgtcatcgtgcag 240 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| Sbjct: 1419 gcgctggacgcccagaacgtgcgctccgccatcggcgaccgcatctccatcatcgtccag 1478 Query: 241 aactcggcgcttatgctcgtcgcatgcaccgccgggttcgtcctgcagtggcgcctcgcg 300 ||||||||||| ||||| || || ||||||||||| |||||||||||||||||||||||| Sbjct: 1479 aactcggcgctcatgctggtggcctgcaccgccggcttcgtcctgcagtggcgcctcgcg 1538 Query: 301 ctcgtgctcctcgccgtcttcccgctcgtcgttggcgccaccgtgctgcagaagatgttc 360 || ||||| || |||||||||||||| || || | ||||||||| ||||||||||||||| Sbjct: 1539 ctggtgctgctggccgtcttcccgctggtggtggccgccaccgttctgcagaagatgttc 1598 Query: 361 atgaagggcttctccggtgacctggaaggcgcgcacgccaaggcgacg 408 | ||||| ||||| || |||||||| | |||||||| | ||||||| Sbjct: 1599 ctcaaggggttctcgggcgacctggagcgggcgcacgcgagggcgacg 1646
>ref|XM_483819.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4195 Score = 452 bits (228), Expect = e-124 Identities = 363/408 (88%) Strand = Plus / Plus Query: 1 ctcatcggcatgtcctccgcggcgctgctcttcaacaccgtgcagcacctcttctgggac 60 |||||||||||||||||||| || |||||||||||||| || |||||||||||||||||| Sbjct: 2457 ctcatcggcatgtcctccgccgccctgctcttcaacactgtccagcacctcttctgggac 2516 Query: 61 acggtcggcgagaacctgaccaaacgcgtgcgcgagaagatgctcacggcggtgctccgc 120 || |||||||||||||| ||||| ||||| ||||||| ||||||| | || ||||||||| Sbjct: 2517 accgtcggcgagaacctcaccaagcgcgtccgcgagaggatgctcgccgccgtgctccgc 2576 Query: 121 aacgagatggcctggttcgacatggaggccaacgccagcgcgcacatagccgccaggctc 180 |||||||| ||||||||||||||||||| |||| ||||||| | ||| ||||||||||| Sbjct: 2577 aacgagatcgcctggttcgacatggaggacaactccagcgcccgcatcgccgccaggctg 2636 Query: 181 gcgctggacgcccagaacgtgcgctccgccatcggggaccgcatctccgtcatcgtgcag 240 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| Sbjct: 2637 gcgctggacgcccagaacgtgcgctccgccatcggcgaccgcatctccatcatcgtccag 2696 Query: 241 aactcggcgcttatgctcgtcgcatgcaccgccgggttcgtcctgcagtggcgcctcgcg 300 ||||||||||| ||||| || || ||||||||||| |||||||||||||||||||||||| Sbjct: 2697 aactcggcgctcatgctggtggcctgcaccgccggcttcgtcctgcagtggcgcctcgcg 2756 Query: 301 ctcgtgctcctcgccgtcttcccgctcgtcgttggcgccaccgtgctgcagaagatgttc 360 || ||||| || |||||||||||||| || || | ||||||||| ||||||||||||||| Sbjct: 2757 ctggtgctgctggccgtcttcccgctggtggtggccgccaccgttctgcagaagatgttc 2816 Query: 361 atgaagggcttctccggtgacctggaaggcgcgcacgccaaggcgacg 408 | ||||| ||||| || |||||||| | |||||||| | ||||||| Sbjct: 2817 ctcaaggggttctcgggcgacctggagcgggcgcacgcgagggcgacg 2864
>ref|XM_483818.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3129 Score = 452 bits (228), Expect = e-124 Identities = 363/408 (88%) Strand = Plus / Plus Query: 1 ctcatcggcatgtcctccgcggcgctgctcttcaacaccgtgcagcacctcttctgggac 60 |||||||||||||||||||| || |||||||||||||| || |||||||||||||||||| Sbjct: 2399 ctcatcggcatgtcctccgccgccctgctcttcaacactgtccagcacctcttctgggac 2458 Query: 61 acggtcggcgagaacctgaccaaacgcgtgcgcgagaagatgctcacggcggtgctccgc 120 || |||||||||||||| ||||| ||||| ||||||| ||||||| | || ||||||||| Sbjct: 2459 accgtcggcgagaacctcaccaagcgcgtccgcgagaggatgctcgccgccgtgctccgc 2518 Query: 121 aacgagatggcctggttcgacatggaggccaacgccagcgcgcacatagccgccaggctc 180 |||||||| ||||||||||||||||||| |||| ||||||| | ||| ||||||||||| Sbjct: 2519 aacgagatcgcctggttcgacatggaggacaactccagcgcccgcatcgccgccaggctg 2578 Query: 181 gcgctggacgcccagaacgtgcgctccgccatcggggaccgcatctccgtcatcgtgcag 240 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| Sbjct: 2579 gcgctggacgcccagaacgtgcgctccgccatcggcgaccgcatctccatcatcgtccag 2638 Query: 241 aactcggcgcttatgctcgtcgcatgcaccgccgggttcgtcctgcagtggcgcctcgcg 300 ||||||||||| ||||| || || ||||||||||| |||||||||||||||||||||||| Sbjct: 2639 aactcggcgctcatgctggtggcctgcaccgccggcttcgtcctgcagtggcgcctcgcg 2698 Query: 301 ctcgtgctcctcgccgtcttcccgctcgtcgttggcgccaccgtgctgcagaagatgttc 360 || ||||| || |||||||||||||| || || | ||||||||| ||||||||||||||| Sbjct: 2699 ctggtgctgctggccgtcttcccgctggtggtggccgccaccgttctgcagaagatgttc 2758 Query: 361 atgaagggcttctccggtgacctggaaggcgcgcacgccaaggcgacg 408 | ||||| ||||| || |||||||| | |||||||| | ||||||| Sbjct: 2759 ctcaaggggttctcgggcgacctggagcgggcgcacgcgagggcgacg 2806
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 452 bits (228), Expect = e-124 Identities = 363/408 (88%) Strand = Plus / Plus Query: 1 ctcatcggcatgtcctccgcggcgctgctcttcaacaccgtgcagcacctcttctgggac 60 |||||||||||||||||||| || |||||||||||||| || |||||||||||||||||| Sbjct: 28260939 ctcatcggcatgtcctccgccgccctgctcttcaacactgtccagcacctcttctgggac 28260998 Query: 61 acggtcggcgagaacctgaccaaacgcgtgcgcgagaagatgctcacggcggtgctccgc 120 || |||||||||||||| ||||| ||||| ||||||| ||||||| | || ||||||||| Sbjct: 28260999 accgtcggcgagaacctcaccaagcgcgtccgcgagaggatgctcgccgccgtgctccgc 28261058 Query: 121 aacgagatggcctggttcgacatggaggccaacgccagcgcgcacatagccgccaggctc 180 |||||||| ||||||||||||||||||| |||| ||||||| | ||| ||||||||||| Sbjct: 28261059 aacgagatcgcctggttcgacatggaggacaactccagcgcccgcatcgccgccaggctg 28261118 Query: 181 gcgctggacgcccagaacgtgcgctccgccatcggggaccgcatctccgtcatcgtgcag 240 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| Sbjct: 28261119 gcgctggacgcccagaacgtgcgctccgccatcggcgaccgcatctccatcatcgtccag 28261178 Query: 241 aactcggcgcttatgctcgtcgcatgcaccgccgggttcgtcctgcagtggcgcctcgcg 300 ||||||||||| ||||| || || ||||||||||| |||||||||||||||||||||||| Sbjct: 28261179 aactcggcgctcatgctggtggcctgcaccgccggcttcgtcctgcagtggcgcctcgcg 28261238 Query: 301 ctcgtgctcctcgccgtcttcccgctcgtcgttggcgccaccgtgctgcagaagatgttc 360 || ||||| || |||||||||||||| || || | ||||||||| ||||||||||||||| Sbjct: 28261239 ctggtgctgctggccgtcttcccgctggtggtggccgccaccgttctgcagaagatgttc 28261298 Query: 361 atgaagggcttctccggtgacctggaaggcgcgcacgccaaggcgacg 408 | ||||| ||||| || |||||||| | |||||||| | ||||||| Sbjct: 28261299 ctcaaggggttctcgggcgacctggagcgggcgcacgcgagggcgacg 28261346 Score = 40.1 bits (20), Expect = 5.5 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 289 tggcgcctc-gcgctcgtgctcctcgccgtct 319 ||||||||| ||||| |||||||||||||||| Sbjct: 21574501 tggcgcctccgcgcttgtgctcctcgccgtct 21574470
>dbj|AP004623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0705A05 Length = 143765 Score = 452 bits (228), Expect = e-124 Identities = 363/408 (88%) Strand = Plus / Plus Query: 1 ctcatcggcatgtcctccgcggcgctgctcttcaacaccgtgcagcacctcttctgggac 60 |||||||||||||||||||| || |||||||||||||| || |||||||||||||||||| Sbjct: 52754 ctcatcggcatgtcctccgccgccctgctcttcaacactgtccagcacctcttctgggac 52813 Query: 61 acggtcggcgagaacctgaccaaacgcgtgcgcgagaagatgctcacggcggtgctccgc 120 || |||||||||||||| ||||| ||||| ||||||| ||||||| | || ||||||||| Sbjct: 52814 accgtcggcgagaacctcaccaagcgcgtccgcgagaggatgctcgccgccgtgctccgc 52873 Query: 121 aacgagatggcctggttcgacatggaggccaacgccagcgcgcacatagccgccaggctc 180 |||||||| ||||||||||||||||||| |||| ||||||| | ||| ||||||||||| Sbjct: 52874 aacgagatcgcctggttcgacatggaggacaactccagcgcccgcatcgccgccaggctg 52933 Query: 181 gcgctggacgcccagaacgtgcgctccgccatcggggaccgcatctccgtcatcgtgcag 240 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| Sbjct: 52934 gcgctggacgcccagaacgtgcgctccgccatcggcgaccgcatctccatcatcgtccag 52993 Query: 241 aactcggcgcttatgctcgtcgcatgcaccgccgggttcgtcctgcagtggcgcctcgcg 300 ||||||||||| ||||| || || ||||||||||| |||||||||||||||||||||||| Sbjct: 52994 aactcggcgctcatgctggtggcctgcaccgccggcttcgtcctgcagtggcgcctcgcg 53053 Query: 301 ctcgtgctcctcgccgtcttcccgctcgtcgttggcgccaccgtgctgcagaagatgttc 360 || ||||| || |||||||||||||| || || | ||||||||| ||||||||||||||| Sbjct: 53054 ctggtgctgctggccgtcttcccgctggtggtggccgccaccgttctgcagaagatgttc 53113 Query: 361 atgaagggcttctccggtgacctggaaggcgcgcacgccaaggcgacg 408 | ||||| ||||| || |||||||| | |||||||| | ||||||| Sbjct: 53114 ctcaaggggttctcgggcgacctggagcgggcgcacgcgagggcgacg 53161
>dbj|AK121506.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022P13, full insert sequence Length = 4194 Score = 452 bits (228), Expect = e-124 Identities = 363/408 (88%) Strand = Plus / Plus Query: 1 ctcatcggcatgtcctccgcggcgctgctcttcaacaccgtgcagcacctcttctgggac 60 |||||||||||||||||||| || |||||||||||||| || |||||||||||||||||| Sbjct: 2456 ctcatcggcatgtcctccgccgccctgctcttcaacactgtccagcacctcttctgggac 2515 Query: 61 acggtcggcgagaacctgaccaaacgcgtgcgcgagaagatgctcacggcggtgctccgc 120 || |||||||||||||| ||||| ||||| ||||||| ||||||| | || ||||||||| Sbjct: 2516 accgtcggcgagaacctcaccaagcgcgtccgcgagaggatgctcgccgccgtgctccgc 2575 Query: 121 aacgagatggcctggttcgacatggaggccaacgccagcgcgcacatagccgccaggctc 180 |||||||| ||||||||||||||||||| |||| ||||||| | ||| ||||||||||| Sbjct: 2576 aacgagatcgcctggttcgacatggaggacaactccagcgcccgcatcgccgccaggctg 2635 Query: 181 gcgctggacgcccagaacgtgcgctccgccatcggggaccgcatctccgtcatcgtgcag 240 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| Sbjct: 2636 gcgctggacgcccagaacgtgcgctccgccatcggcgaccgcatctccatcatcgtccag 2695 Query: 241 aactcggcgcttatgctcgtcgcatgcaccgccgggttcgtcctgcagtggcgcctcgcg 300 ||||||||||| ||||| || || ||||||||||| |||||||||||||||||||||||| Sbjct: 2696 aactcggcgctcatgctggtggcctgcaccgccggcttcgtcctgcagtggcgcctcgcg 2755 Query: 301 ctcgtgctcctcgccgtcttcccgctcgtcgttggcgccaccgtgctgcagaagatgttc 360 || ||||| || |||||||||||||| || || | ||||||||| ||||||||||||||| Sbjct: 2756 ctggtgctgctggccgtcttcccgctggtggtggccgccaccgttctgcagaagatgttc 2815 Query: 361 atgaagggcttctccggtgacctggaaggcgcgcacgccaaggcgacg 408 | ||||| ||||| || |||||||| | |||||||| | ||||||| Sbjct: 2816 ctcaaggggttctcgggcgacctggagcgggcgcacgcgagggcgacg 2863
>dbj|AK119880.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-G08, full insert sequence Length = 3129 Score = 452 bits (228), Expect = e-124 Identities = 363/408 (88%) Strand = Plus / Plus Query: 1 ctcatcggcatgtcctccgcggcgctgctcttcaacaccgtgcagcacctcttctgggac 60 |||||||||||||||||||| || |||||||||||||| || |||||||||||||||||| Sbjct: 2399 ctcatcggcatgtcctccgccgccctgctcttcaacactgtccagcacctcttctgggac 2458 Query: 61 acggtcggcgagaacctgaccaaacgcgtgcgcgagaagatgctcacggcggtgctccgc 120 || |||||||||||||| ||||| ||||| ||||||| ||||||| | || ||||||||| Sbjct: 2459 accgtcggcgagaacctcaccaagcgcgtccgcgagaggatgctcgccgccgtgctccgc 2518 Query: 121 aacgagatggcctggttcgacatggaggccaacgccagcgcgcacatagccgccaggctc 180 |||||||| ||||||||||||||||||| |||| ||||||| | ||| ||||||||||| Sbjct: 2519 aacgagatcgcctggttcgacatggaggacaactccagcgcccgcatcgccgccaggctg 2578 Query: 181 gcgctggacgcccagaacgtgcgctccgccatcggggaccgcatctccgtcatcgtgcag 240 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| Sbjct: 2579 gcgctggacgcccagaacgtgcgctccgccatcggcgaccgcatctccatcatcgtccag 2638 Query: 241 aactcggcgcttatgctcgtcgcatgcaccgccgggttcgtcctgcagtggcgcctcgcg 300 ||||||||||| ||||| || || ||||||||||| |||||||||||||||||||||||| Sbjct: 2639 aactcggcgctcatgctggtggcctgcaccgccggcttcgtcctgcagtggcgcctcgcg 2698 Query: 301 ctcgtgctcctcgccgtcttcccgctcgtcgttggcgccaccgtgctgcagaagatgttc 360 || ||||| || |||||||||||||| || || | ||||||||| ||||||||||||||| Sbjct: 2699 ctggtgctgctggccgtcttcccgctggtggtggccgccaccgttctgcagaagatgttc 2758 Query: 361 atgaagggcttctccggtgacctggaaggcgcgcacgccaaggcgacg 408 | ||||| ||||| || |||||||| | |||||||| | ||||||| Sbjct: 2759 ctcaaggggttctcgggcgacctggagcgggcgcacgcgagggcgacg 2806
>emb|AJ535058.1|OSA535058 Oryza sativa (japonica cultivar-group) mdr14 gene for MDR-like ABC transporter, exons 1-4 Length = 5239 Score = 452 bits (228), Expect = e-124 Identities = 363/408 (88%) Strand = Plus / Plus Query: 1 ctcatcggcatgtcctccgcggcgctgctcttcaacaccgtgcagcacctcttctgggac 60 |||||||||||||||||||| || |||||||||||||| || |||||||||||||||||| Sbjct: 3623 ctcatcggcatgtcctccgccgccctgctcttcaacactgtccagcacctcttctgggac 3682 Query: 61 acggtcggcgagaacctgaccaaacgcgtgcgcgagaagatgctcacggcggtgctccgc 120 || |||||||||||||| ||||| ||||| ||||||| ||||||| | || ||||||||| Sbjct: 3683 accgtcggcgagaacctcaccaagcgcgtccgcgagaggatgctcgccgccgtgctccgc 3742 Query: 121 aacgagatggcctggttcgacatggaggccaacgccagcgcgcacatagccgccaggctc 180 |||||||| ||||||||||||||||||| |||| ||||||| | ||| ||||||||||| Sbjct: 3743 aacgagatcgcctggttcgacatggaggacaactccagcgcccgcatcgccgccaggctg 3802 Query: 181 gcgctggacgcccagaacgtgcgctccgccatcggggaccgcatctccgtcatcgtgcag 240 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| Sbjct: 3803 gcgctggacgcccagaacgtgcgctccgccatcggcgaccgcatctccatcatcgtccag 3862 Query: 241 aactcggcgcttatgctcgtcgcatgcaccgccgggttcgtcctgcagtggcgcctcgcg 300 ||||||||||| ||||| || || ||||||||||| |||||||||||||||||||||||| Sbjct: 3863 aactcggcgctcatgctggtggcctgcaccgccggcttcgtcctgcagtggcgcctcgcg 3922 Query: 301 ctcgtgctcctcgccgtcttcccgctcgtcgttggcgccaccgtgctgcagaagatgttc 360 || ||||| || |||||||||||||| || || | ||||||||| ||||||||||||||| Sbjct: 3923 ctggtgctgctggccgtcttcccgctggtggtggccgccaccgttctgcagaagatgttc 3982 Query: 361 atgaagggcttctccggtgacctggaaggcgcgcacgccaaggcgacg 408 | ||||| ||||| || |||||||| | |||||||| | ||||||| Sbjct: 3983 ctcaaggggttctcgggcgacctggagcgggcgcacgcgagggcgacg 4030
>dbj|AK111817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013139P17, full insert sequence Length = 2982 Score = 444 bits (224), Expect = e-121 Identities = 362/408 (88%) Strand = Plus / Plus Query: 1 ctcatcggcatgtcctccgcggcgctgctcttcaacaccgtgcagcacctcttctgggac 60 |||||||||||||||||||| || |||||||||||||| || |||||||||||||||||| Sbjct: 1239 ctcatcggcatgtcctccgccgccctgctcttcaacactgtccagcacctcttctgggac 1298 Query: 61 acggtcggcgagaacctgaccaaacgcgtgcgcgagaagatgctcacggcggtgctccgc 120 || |||||||||||||| ||||| ||||| ||||||| ||||||| | || ||||||||| Sbjct: 1299 accgtcggcgagaacctcaccaagcgcgtccgcgagaggatgctcgccgccgtgctccgc 1358 Query: 121 aacgagatggcctggttcgacatggaggccaacgccagcgcgcacatagccgccaggctc 180 |||||||| ||||||||||||||||||| |||| ||||||| | ||| ||||||||||| Sbjct: 1359 aacgagatcgcctggttcgacatggaggacaactccagcgcccgcatcgccgccaggctg 1418 Query: 181 gcgctggacgcccagaacgtgcgctccgccatcggggaccgcatctccgtcatcgtgcag 240 || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| Sbjct: 1419 gcactggacgcccagaacgtgcgctccgccatcggcgaccgcatctccatcatcgtccag 1478 Query: 241 aactcggcgcttatgctcgtcgcatgcaccgccgggttcgtcctgcagtggcgcctcgcg 300 ||||||||||| ||||| || || ||||||||||| |||||||||||||||||||||||| Sbjct: 1479 aactcggcgctcatgctggtggcctgcaccgccggcttcgtcctgcagtggcgcctcgcg 1538 Query: 301 ctcgtgctcctcgccgtcttcccgctcgtcgttggcgccaccgtgctgcagaagatgttc 360 || ||||| || |||||||||||||| || || | ||||||||| ||||||||||||||| Sbjct: 1539 ctggtgctgctggccgtcttcccgctggtggtggccgccaccgttctgcagaagatgttc 1598 Query: 361 atgaagggcttctccggtgacctggaaggcgcgcacgccaaggcgacg 408 | ||||| ||||| || |||||||| | |||||||| | ||||||| Sbjct: 1599 ctcaaggggttctcgggcgacctggagcgggcgcacgcgagggcgacg 1646
>emb|X53604.1|ZMMU8 Maize mutator element Mu8 Length = 1428 Score = 438 bits (221), Expect = e-120 Identities = 361/401 (90%), Gaps = 5/401 (1%) Strand = Plus / Minus Query: 1 ctcatcggcatgtcctccgcggcgctgctcttcaacaccgtgcagcacctcttctgggac 60 ||||||||||||||||| ||| ||||||| |||||||| ||||||||| | ||||||||| Sbjct: 790 ctcatcggcatgtcctc-gcg-cgctgctgttcaacacggtgcagcacgtgttctgggac 733 Query: 61 acggtcggcgagaacctgaccaaacgcgtgcgcgagaagatgctcacggcggtgctccgc 120 ||||| ||||||||||||||||| || ||||||||||||||| || || ||||||||| Sbjct: 732 acggtgggcgagaacctgaccaagcgggtgcgcgagaagatgttcgacgccgtgctccgc 673 Query: 121 aacgagatggcctggttcgacatggaggccaacgccagcgcgcacatagccgccaggctc 180 |||||||| ||||||||||||| ||| | ||||||||||||| | | || ||||||||| Sbjct: 672 aacgagatcgcctggttcgacacggacgagaacgccagcgcgcgcgtggc-gccaggctc 614 Query: 181 gcgctggacgcccagaacgtgcgctccgccatcggggaccgcatctccgtcatcgtgcag 240 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct: 613 gcgctggacgcccagaacgtgccgtccgccatcggggaccgcatctccgtcatcgtccag 554 Query: 241 aactcggcgcttatgctcgtcgcatg-caccgccgggttcgtcctgcagtggcgcctcgc 299 ||||||||||| ||||| || || || |||||| ||||||||||| ||||| |||||||| Sbjct: 553 aactcggcgctgatgctggtggcctgacaccgcggggttcgtcctccagtg-cgcctcgc 495 Query: 300 gctcgtgctcctcgccgtcttcccgctcgtcgttggcgccaccgtgctgcagaagatgtt 359 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct: 494 gctcgtgctcctcgccgtgttcccgctcgtcgtgggcgccaccgtgctgcagaagatgtt 435 Query: 360 catgaagggcttctccggtgacctggaaggcgcgcacgcca 400 ||||||||||||||| || |||||||| | ||||||||||| Sbjct: 434 catgaagggcttctcgggggacctggaggccgcgcacgcca 394
>dbj|AK105923.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A06, full insert sequence Length = 1674 Score = 387 bits (195), Expect = e-104 Identities = 318/359 (88%) Strand = Plus / Plus Query: 50 tcttctgggacacggtcggcgagaacctgaccaaacgcgtgcgcgagaagatgctcacgg 109 ||||||||||||| |||||||||||||| ||||| ||||| ||||||| ||||||| | | Sbjct: 1 tcttctgggacaccgtcggcgagaacctcaccaagcgcgtccgcgagaggatgctcgccg 60 Query: 110 cggtgctccgcaacgagatggcctggttcgacatggaggccaacgccagcgcgcacatag 169 | ||||||||||||||||| ||||||||||||||||||| |||| ||||||| | ||| | Sbjct: 61 ccgtgctccgcaacgagatcgcctggttcgacatggaggacaactccagcgcccgcatcg 120 Query: 170 ccgccaggctcgcgctggacgcccagaacgtgcgctccgccatcggggaccgcatctccg 229 |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 121 ccgccaggctggcgctggacgcccagaacgtgcgctccgccatcggcgaccgcatctcca 180 Query: 230 tcatcgtgcagaactcggcgcttatgctcgtcgcatgcaccgccgggttcgtcctgcagt 289 ||||||| |||||||||||||| ||||| || || ||||||||||| ||||||||||||| Sbjct: 181 tcatcgtccagaactcggcgctcatgctggtggcctgcaccgccggcttcgtcctgcagt 240 Query: 290 ggcgcctcgcgctcgtgctcctcgccgtcttcccgctcgtcgttggcgccaccgtgctgc 349 ||||||||||||| ||||| || |||||||||||||| || || | ||||||||| |||| Sbjct: 241 ggcgcctcgcgctggtgctgctggccgtcttcccgctggtggtggccgccaccgttctgc 300 Query: 350 agaagatgttcatgaagggcttctccggtgacctggaaggcgcgcacgccaaggcgacg 408 ||||||||||| | ||||| ||||| || |||||||| | |||||||| | ||||||| Sbjct: 301 agaagatgttcctcaaggggttctcgggcgacctggagcgggcgcacgcgagggcgacg 359
>dbj|AK111869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045G11, full insert sequence Length = 2583 Score = 315 bits (159), Expect = 6e-83 Identities = 352/411 (85%), Gaps = 4/411 (0%) Strand = Plus / Minus Query: 1 ctcatcggcatgtcctccgcggcgctgctcttcaacaccgtgcagcacctcttctgggac 60 |||| ||||||||||||| | ||||||||| ||||||| || ||||| || ||| | Sbjct: 1722 ctcagcggcatgtcctccccccgcctgctcttccacaccgtccaccaccttttttggacc 1663 Query: 61 acggtcggcgagaacctgaccaaacgcgtgcgcgagaagat-gctcacggcggtgctccg 119 || ||| |||||||||| ||||| ||||| ||||||| ||| |||| | || ||||||| Sbjct: 1662 accgtc-gcgagaacctcaccaagcgcgtccgcgagaggatggctcgccgccctgctccg 1604 Query: 120 caa-cgagatggcctggttcgacatggaggccaacgccagcgcgcacatagccgccaggc 178 ||| |||||| ||||||||||||||||||| |||| ||||||| | ||| |||||||||| Sbjct: 1603 caagcgagatcgcctggttcgacatggaggacaactccagcgcccgcatcgccgccaggc 1544 Query: 179 tcgcgctggacgcccagaacgtgcgctccgccatcggggaccgcatctccgtcatcgtgc 238 | ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | Sbjct: 1543 tggcgctggacgcccagaacgtgcgctccgccatcggcgaccgcatctccatcatcgtcc 1484 Query: 239 agaactcggcgcttatgctcgtcgcatgcaccgccgggttcgtcctgcagtggcgcctcg 298 ||||||||||||| ||||| || || ||||||||||| |||||||||||||||||||||| Sbjct: 1483 agaactcggcgctcatgctggtggcctgcaccgccggcttcgtcctgcagtggcgcctcg 1424 Query: 299 cgctcgtgctcctcgccgtcttcccgctcgtcgttggcg-ccaccgtgctgcagaagatg 357 |||| ||||| || |||||||||||||| || || | || ||||||| |||||||||||| Sbjct: 1423 cgctggtgctgctggccgtcttcccgctggtggtggccgcccaccgttctgcagaagatg 1364 Query: 358 ttcatgaagggcttctccggtgacctggaaggcgcgcacgccaaggcgacg 408 ||| | ||||| ||||| || |||||||| | |||||||| | ||||||| Sbjct: 1363 ttcctcaaggggttctcgggcgacctggagcgggcgcacgcgagggcgacg 1313
>gb|U52079.1|STU52079 Solanum tuberosum P-glycoprotein (pmdr1) mRNA, complete cds Length = 4160 Score = 52.0 bits (26), Expect = 0.001 Identities = 131/166 (78%) Strand = Plus / Plus Query: 223 atctccgtcatcgtgcagaactcggcgcttatgctcgtcgcatgcaccgccgggttcgtc 282 ||||||||||| |||||||||| || || ||||| ||||| ||||| || || ||||| Sbjct: 2568 atctccgtcattatgcagaactcagctctcatgctagtcgcgtgcactgcaggattcgta 2627 Query: 283 ctgcagtggcgcctcgcgctcgtgctcctcgccgtcttcccgctcgtcgttggcgccacc 342 |||||||||| || || ||||| ||| | | |||||||| | ||||||| || || Sbjct: 2628 ttgcagtggcgtctggccctcgtcctcattggggtcttccccgtggtcgttgcagcaaca 2687 Query: 343 gtgctgcagaagatgttcatgaagggcttctccggtgacctggaag 388 || | ||||| |||||||||||||| ||||| || ||| |||||| Sbjct: 2688 gttttacagaaaatgttcatgaagggattctcaggagacttggaag 2733
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 6 cggcatgtcctccgcggcgctgctc 30 ||||||| ||||||||||||||||| Sbjct: 1213872 cggcatggcctccgcggcgctgctc 1213896
>ref|XM_482638.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2671 Score = 40.1 bits (20), Expect = 5.5 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 289 tggcgcctc-gcgctcgtgctcctcgccgtct 319 ||||||||| ||||| |||||||||||||||| Sbjct: 914 tggcgcctccgcgcttgtgctcctcgccgtct 945
>ref|NM_185037.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2175 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 gatgctcacggcggtgctcc 118 |||||||||||||||||||| Sbjct: 1404 gatgctcacggcggtgctcc 1423
>ref|NM_184957.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1659 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 cgtgcgctccgccatcgggg 217 |||||||||||||||||||| Sbjct: 600 cgtgcgctccgccatcgggg 619
>ref|XM_365298.1| Magnaporthe grisea 70-15 hypothetical protein (MG02000.4) partial mRNA Length = 1416 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 tgcaccgccgggttcgtcct 284 |||||||||||||||||||| Sbjct: 959 tgcaccgccgggttcgtcct 940
>gb|DQ145115.1| Sarcoptes scabiei type suis voltage sensitive sodium channel (vssc) gene, partial cds Length = 5027 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 gcagaagatgttcatgaagg 367 |||||||||||||||||||| Sbjct: 4674 gcagaagatgttcatgaagg 4693
>gb|DQ077148.1| Sarcoptes scabiei type hominis voltage-sensitive sodium channel (vssc) gene, partial cds Length = 6151 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 gcagaagatgttcatgaagg 367 |||||||||||||||||||| Sbjct: 5798 gcagaagatgttcatgaagg 5817
>gb|DQ077149.1| Sarcoptes scabiei type hominis voltage-sensitive sodium channel (vssc) mRNA, partial cds Length = 3537 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 gcagaagatgttcatgaagg 367 |||||||||||||||||||| Sbjct: 2773 gcagaagatgttcatgaagg 2792
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 gatgctcacggcggtgctcc 118 |||||||||||||||||||| Sbjct: 33057551 gatgctcacggcggtgctcc 33057570 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 cgtgcgctccgccatcgggg 217 |||||||||||||||||||| Sbjct: 21931849 cgtgcgctccgccatcgggg 21931868
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 aggcgcgcacgccaaggcga 406 |||||||||||||||||||| Sbjct: 228263 aggcgcgcacgccaaggcga 228244
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 gatgctcacggcggtgctcc 118 |||||||||||||||||||| Sbjct: 33148061 gatgctcacggcggtgctcc 33148080 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 cgtgcgctccgccatcgggg 217 |||||||||||||||||||| Sbjct: 21924878 cgtgcgctccgccatcgggg 21924897
>gb|AC120537.6| Oryza sativa chromosome 3 BAC OSJNBb0042N11 genomic sequence, complete sequence Length = 127210 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 cgtgcgctccgccatcgggg 217 |||||||||||||||||||| Sbjct: 77167 cgtgcgctccgccatcgggg 77148
>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete sequence Length = 139823 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 gatgctcacggcggtgctcc 118 |||||||||||||||||||| Sbjct: 65757 gatgctcacggcggtgctcc 65738
>dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0708B04 Length = 170523 Score = 40.1 bits (20), Expect = 5.5 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 289 tggcgcctc-gcgctcgtgctcctcgccgtct 319 ||||||||| ||||| |||||||||||||||| Sbjct: 34675 tggcgcctccgcgcttgtgctcctcgccgtct 34644
>dbj|AK111772.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067P10, full insert sequence Length = 2671 Score = 40.1 bits (20), Expect = 5.5 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 289 tggcgcctc-gcgctcgtgctcctcgccgtct 319 ||||||||| ||||| |||||||||||||||| Sbjct: 914 tggcgcctccgcgcttgtgctcctcgccgtct 945
>dbj|AK069017.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170D06, full insert sequence Length = 1763 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 cgtgcgctccgccatcgggg 217 |||||||||||||||||||| Sbjct: 650 cgtgcgctccgccatcgggg 669
>dbj|AK068267.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149D11, full insert sequence Length = 1363 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 gatgctcacggcggtgctcc 118 |||||||||||||||||||| Sbjct: 688 gatgctcacggcggtgctcc 707
>dbj|AK064790.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000C06, full insert sequence Length = 2309 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 gatgctcacggcggtgctcc 118 |||||||||||||||||||| Sbjct: 1414 gatgctcacggcggtgctcc 1433
>gb|AY613855.1| Oikopleura dioica clone BACOIKO007 10xi11, complete sequence Length = 104968 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 gcggcgctgctcttcaacac 38 |||||||||||||||||||| Sbjct: 65513 gcggcgctgctcttcaacac 65532
>gb|AY846870.1| Gordonia terrae phage GTE5 genomic sequence Length = 31661 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 ggaccgcatctccgtcatcg 235 |||||||||||||||||||| Sbjct: 2335 ggaccgcatctccgtcatcg 2316
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 gcgcctcgcgctcgtgctcc 310 |||||||||||||||||||| Sbjct: 2207856 gcgcctcgcgctcgtgctcc 2207837
>gb|AY048670.1| Streptomyces globisporus enediyne antitumor antibiotic C-1027 biosynthetic gene cluster, complete sequence Length = 85163 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ggcctggttcgacatggagg 148 |||||||||||||||||||| Sbjct: 46449 ggcctggttcgacatggagg 46468 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,390,349 Number of Sequences: 3902068 Number of extensions: 2390349 Number of successful extensions: 42870 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 42464 Number of HSP's gapped (non-prelim): 404 length of query: 408 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 386 effective length of database: 17,147,199,772 effective search space: 6618819111992 effective search space used: 6618819111992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
