ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast61e12 |
|---|---|
| Clone Library Name | barley_pub |
>HPPD_HORVU (O48604) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) Length = 434 Score = 157 bits (396), Expect = 8e-39 Identities = 76/98 (77%), Positives = 76/98 (77%) Frame = +2 Query: 95 RPHRMVRFNPRSDRFHTLSFHHVEFWCXXXXXXXXXXXXXXXXXXXXXXDLSTGNSAHAS 274 RPHRMVRFNPRSDRFHTLSFHHVEFWC DLSTGNSAHAS Sbjct: 23 RPHRMVRFNPRSDRFHTLSFHHVEFWCADAASAAGRFAFALGAPLAARSDLSTGNSAHAS 82 Query: 275 QLLRSGSLAFLFTAPYANGCDAATASLPSFSADAARRF 388 QLLRSGSLAFLFTAPYANGCDAATASLPSFSADAARRF Sbjct: 83 QLLRSGSLAFLFTAPYANGCDAATASLPSFSADAARRF 120
>HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) Length = 436 Score = 85.1 bits (209), Expect = 4e-17 Identities = 45/94 (47%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Frame = +2 Query: 110 VRFNPRSDRFHTLSFHHVEFWCXXXXXXXXXXXXXXXXXXXXXXDLSTGNSAHASQLLRS 289 VR NP SD F FHHVEFWC DLSTGNSAHAS LLRS Sbjct: 25 VRSNPMSDHFPVHRFHHVEFWCGDATNTSRRFSWGLGMPLVAKSDLSTGNSAHASYLLRS 84 Query: 290 GSLAFLFTAPYANG-CDAATASLPSFSADAARRF 388 G L+F+FTAPY+ + ++AS+P+FS R F Sbjct: 85 GELSFVFTAPYSPSLAEPSSASIPTFSFSDHRAF 118
>HPPD_ARATH (P93836) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) Length = 445 Score = 84.0 bits (206), Expect = 8e-17 Identities = 44/101 (43%), Positives = 51/101 (50%), Gaps = 6/101 (5%) Frame = +2 Query: 104 RMVRFNPRSDRFHTLSFHHVEFWCXXXXXXXXXXXXXXXXXXXXXXDLSTGNSAHASQLL 283 + VR NP+SD+F FHH+EFWC DLSTGN HAS LL Sbjct: 31 KFVRKNPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMVHASYLL 90 Query: 284 RSGSLAFLFTAPYANGCDA------ATASLPSFSADAARRF 388 SG L FLFTAPY+ A TAS+PSF + R F Sbjct: 91 TSGDLRFLFTAPYSPSLSAGEIKPTTTASIPSFDHGSCRSF 131
>HPPD_DAUCA (O23920) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) Length = 442 Score = 82.0 bits (201), Expect = 3e-16 Identities = 41/98 (41%), Positives = 53/98 (54%), Gaps = 2/98 (2%) Frame = +2 Query: 101 HRMVRFNPRSDRFHTLSFHHVEFWCXXXXXXXXXXXXXXXXXXXXXXDLSTGNSAHASQL 280 + VR NP+SD F FHH+EFWC DLSTGNS HAS L Sbjct: 29 NNFVRANPKSDHFAVKRFHHIEFWCGDATNTSRRFSWGLGMPLVAKSDLSTGNSVHASYL 88 Query: 281 LRSGSLAFLFTAPY--ANGCDAATASLPSFSADAARRF 388 +RS +L+F+FTAPY + + +A++PSFSA F Sbjct: 89 VRSANLSFVFTAPYSPSTTTSSGSAAIPSFSASGFHSF 126
>RL22_DROME (P50887) 60S ribosomal protein L22| Length = 299 Score = 33.1 bits (74), Expect = 0.17 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Frame = -1 Query: 384 RRAASAEKEGREAVAASQPLA*GAVKRKAREPERSSWEACAEFP---VERSDLAASGAPS 214 ++A+ A K+ + A AA++P A K A +P +S +A + P + D A+ AP+ Sbjct: 54 KKASEAAKDVKAAAAAAKP---AAAKPAAAKPAAASKDAGKKAPAAAAPKKDAKAAAAPA 110 Query: 213 ANAKRPAAEAAS 178 PA +AAS Sbjct: 111 PAKAAPAKKAAS 122 Score = 30.4 bits (67), Expect = 1.1 Identities = 22/65 (33%), Positives = 31/65 (47%) Frame = -1 Query: 378 AASAEKEGREAVAASQPLA*GAVKRKAREPERSSWEACAEFPVERSDLAASGAPSANAKR 199 AA+A K+ +A AA P K+ A P A P +++ A + AP+A A Sbjct: 95 AAAAPKKDAKAAAAPAPAKAAPAKKAASTP-------AAAPPAKKAAPAKAAAPAAAAPA 147 Query: 198 PAAEA 184 PAA A Sbjct: 148 PAAAA 152
>HPPD_MYCGR (O42764) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) Length = 419 Score = 31.2 bits (69), Expect = 0.63 Identities = 18/77 (23%), Positives = 30/77 (38%) Frame = +2 Query: 152 FHHVEFWCXXXXXXXXXXXXXXXXXXXXXXDLSTGNSAHASQLLRSGSLAFLFTAPYANG 331 +HH E+W L TG+ AS ++++ + F+FT+P + Sbjct: 42 YHHAEWWVGNAKQVAQFYITRMGFEPVAHKGLETGSRFFASHVVQNNGVRFVFTSPVRSS 101 Query: 332 CDAATASLPSFSADAAR 382 + P AD AR Sbjct: 102 ARQTLKAAP--LADQAR 116
>UGGG_SCHPO (Q09140) UDP-glucose:glycoprotein glucosyltransferase precursor (EC| 2.4.1.-) (UDP--Glc:glycoprotein glucosyltransferase) (UGT) Length = 1448 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -1 Query: 249 ERSDLAASGAPSANAKRPAAEAASAHQNSTWWKESVWKRSLRGLK 115 E D+ GAP P ++ + +WK+ WK+ LRGLK Sbjct: 1270 ELMDMDLHGAPYGYT--PMCDSREEMEGFRFWKKGYWKKFLRGLK 1312
>BASP_MOUSE (Q91XV3) Brain acid soluble protein 1 (BASP1 protein) (Neuronal| axonal membrane protein NAP-22) (22 kDa neuronal tissue-enriched acidic protein) Length = 225 Score = 29.6 bits (65), Expect = 1.8 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Frame = -1 Query: 378 AASAEKEGR--EAVAASQPLA*GAVKRKAREPERSSWEACAEFPVERSDLAASGAPSANA 205 AA E E + EA AA+ P A A + + SS E P + AAS APS+ A Sbjct: 137 AAPEEGEAKKTEAPAAAGPEAKSDAAPAASDSKPSSAEPA---PSSKETPAASEAPSSAA 193 Query: 204 KRPAAEAASA 175 K PA A +A Sbjct: 194 KAPAPAAPAA 203
>BASP_RAT (Q05175) Brain acid soluble protein 1 (BASP1 protein) (Neuronal| axonal membrane protein NAP-22) (22 kDa neuronal tissue-enriched acidic protein) Length = 219 Score = 29.6 bits (65), Expect = 1.8 Identities = 23/68 (33%), Positives = 28/68 (41%) Frame = -1 Query: 378 AASAEKEGREAVAASQPLA*GAVKRKAREPERSSWEACAEFPVERSDLAASGAPSANAKR 199 A A +E EA P A K A S + P + AAS APS+ AK Sbjct: 133 ADGAPQEEGEAKKTEAPAAGPEAKSDAAPAASDSKPSTEPAPSSKETPAASEAPSSAAKA 192 Query: 198 PAAEAASA 175 PA A +A Sbjct: 193 PAPAAPAA 200
>HPPD_COCIM (Q00415) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (T-cell reactive protein) Length = 399 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/25 (44%), Positives = 19/25 (76%) Frame = +2 Query: 245 LSTGNSAHASQLLRSGSLAFLFTAP 319 L TG+ A AS ++R+G++ F+ T+P Sbjct: 55 LETGSKAVASHVVRNGNITFILTSP 79
>HPPD_XENTR (Q5BKL0) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) Length = 394 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/62 (24%), Positives = 22/62 (35%) Frame = +2 Query: 146 LSFHHVEFWCXXXXXXXXXXXXXXXXXXXXXXDLSTGNSAHASQLLRSGSLAFLFTAPYA 325 LSFHH+ FW L TG+ S ++ + F+F +P Sbjct: 17 LSFHHLTFWVGNAKQAASFYCDKFGFEPCAYKGLETGSRDVVSHAIKQDKIIFVFQSPLN 76 Query: 326 NG 331 G Sbjct: 77 PG 78
>HRDB_STRCO (P18183) RNA polymerase principal sigma factor hrdB| Length = 511 Score = 28.9 bits (63), Expect = 3.1 Identities = 23/83 (27%), Positives = 36/83 (43%) Frame = -1 Query: 378 AASAEKEGREAVAASQPLA*GAVKRKAREPERSSWEACAEFPVERSDLAASGAPSANAKR 199 +A+ K R++VAA P +R++ +A A PV A AP+A A Sbjct: 72 SAAEPKRTRKSVAAKSPA------------KRTATKAVAAKPVTSRKATAPAAPAAPATE 119 Query: 198 PAAEAASAHQNSTWWKESVWKRS 130 PAA A K++ K++ Sbjct: 120 PAAVEEEAPAKKAAAKKTTAKKA 142
>ACES_ANOST (P56161) Acetylcholinesterase precursor (EC 3.1.1.7) (AChE)| Length = 664 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +2 Query: 248 STGNSAHASQLLRSGSLAFLFTAPYANG 331 + GN AS R G+ FL+ APY NG Sbjct: 193 AVGNVIVASMQYRVGAFGFLYLAPYING 220
>IF2_BURS3 (Q39H30) Translation initiation factor IF-2| Length = 972 Score = 28.5 bits (62), Expect = 4.1 Identities = 24/74 (32%), Positives = 34/74 (45%) Frame = -1 Query: 384 RRAASAEKEGREAVAASQPLA*GAVKRKAREPERSSWEACAEFPVERSDLAASGAPSANA 205 RR A +E +Q L + + E ER + E AE R++ A+ A Sbjct: 124 RREEEARREADLLEKQAQELRERQERLEREEAERRAREEAAEAERRRAEEEAA------A 177 Query: 204 KRPAAEAASAHQNS 163 KR AAEAA+A Q + Sbjct: 178 KRVAAEAAAAQQQA 191
>H1T_MOUSE (Q07133) Histone H1t (Testicular H1 histone)| Length = 207 Score = 28.5 bits (62), Expect = 4.1 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%) Frame = -1 Query: 387 NRRAASAEKEGREAVAASQPLA*GAVKRKAREPERSSWEACAEFPVERSDLAASGAPSAN 208 +++AAS +G+ +AS + R +R P+ S +A + + + SG + Sbjct: 109 SKKAASGNDKGKGKKSASAKAKKMGLPRASRSPKSSKTKAVKKPKATPTKASGSGRKTKG 168 Query: 207 AK-----RPAAEAASAHQNSTWWKESVWKRSLR 124 AK + A+A +A+ NS K + K LR Sbjct: 169 AKGVQQRKSPAKARAANPNSGKAKMVMQKTDLR 201
>DAB_DROME (P98081) Protein disabled| Length = 2224 Score = 28.5 bits (62), Expect = 4.1 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Frame = -1 Query: 378 AASAEK---EGREAVAASQPLA*GAVKRKAREPERSSWEACAEFPVERSDLAASGAPSAN 208 AA E+ E R AVA Q + G +R+ R+ R+ DLA GAPSA+ Sbjct: 1836 AAETERRLAESRRAVALGQTPSDGEKERRFRKKTRAR---------SAKDLATVGAPSAS 1886 Query: 207 AKRPA 193 P+ Sbjct: 1887 TSAPS 1891
>RBPMS_XENLA (Q9YGP5) RNA-binding protein with multiple splicing homolog| (RBP-MS) (HEart, RRM Expressed Sequence) (Hermes) Length = 196 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = -1 Query: 282 SSWEACAEFPVERSDLAASGAPSANAKRPAAEAASAHQNSTWWKES 145 +S EA A +P+ ++LA + P A PAA AA+ H W+ S Sbjct: 139 ASPEAWAPYPLYTAELAPA-IPHAAFTYPAAAAAALHAQMRWYPPS 183
>RED2_HUMAN (Q9NS39) Double-stranded RNA-specific editase B2 (EC 3.5.-.-)| (dsRNA adenosine deaminase B2) (RNA-dependent adenosine deaminase 3) (RNA-editing deaminase 2) (RNA-editing enzyme 2) Length = 739 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 2/41 (4%) Frame = -1 Query: 255 PVERSDLAASGAPSANAKRPAAEAASAH--QNSTWWKESVW 139 P D A GAP A KRP E H + WK+ W Sbjct: 82 PPPSGDRARGGAPGAKRKRPLEEGNGGHLCKLQLVWKKLSW 122
>WRIP1_MOUSE (Q91XU0) ATPase WRNIP1 (Werner helicase-interacting protein 1)| Length = 660 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/49 (36%), Positives = 23/49 (46%) Frame = -1 Query: 291 PERSSWEACAEFPVERSDLAASGAPSANAKRPAAEAASAHQNSTWWKES 145 P S +FPV RS +S A KRPAA AA+ + W E+ Sbjct: 115 PTPSGARLIPDFPVARS---SSPARKGMGKRPAAAAAAGSASPRSWDEA 160
>HPPD_BRARE (Q6TGZ5) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) Length = 397 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/62 (22%), Positives = 23/62 (37%) Frame = +2 Query: 125 RSDRFHTLSFHHVEFWCXXXXXXXXXXXXXXXXXXXXXXDLSTGNSAHASQLLRSGSLAF 304 + +R L+FHH++FW L TG+ S +R + F Sbjct: 10 KPERGKFLNFHHIKFWVGNAKQAAVFYCDKFGFEPLAYKGLETGSREVVSHAVRQDKIIF 69 Query: 305 LF 310 +F Sbjct: 70 VF 71
>G6PI_HALSA (Q9HNQ6) Probable glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 426 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -1 Query: 264 AEFPVERSDLAASGAPSANAKRPAAEAAS 178 AEF + LAASG P+ + PA +A S Sbjct: 343 AEFEATAASLAASGVPTVRVEVPAVDARS 371
>WRIP1_HUMAN (Q96S55) ATPase WRNIP1 (Werner helicase-interacting protein 1)| Length = 665 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = -1 Query: 291 PERSSWEACAEFPVERSDLAASGAPSANAKRPAAEAASAHQNSTWWKES 145 P S +FPV RS +S + KRPAA AA+ + W E+ Sbjct: 115 PTPSGARLIPDFPVARS---SSPGRKGSGKRPAAAAAAGSASPRSWDEA 160
>WRIP1_RAT (Q8CG07) ATPase WRNIP1 (Werner helicase-interacting protein 1)| Length = 660 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/49 (36%), Positives = 23/49 (46%) Frame = -1 Query: 291 PERSSWEACAEFPVERSDLAASGAPSANAKRPAAEAASAHQNSTWWKES 145 P S +FPV RS +S A KRPAA AA+ + W E+ Sbjct: 115 PTPSGARLIPDFPVARS---SSPARKGLGKRPAAAAAAGSASPRSWDET 160
>TIF1G_MOUSE (Q99PP7) Transcription intermediary factor 1-gamma (TIF1-gamma)| (Tripartite motif protein 33) Length = 1142 Score = 27.7 bits (60), Expect = 6.9 Identities = 22/66 (33%), Positives = 29/66 (43%) Frame = -1 Query: 372 SAEKEGREAVAASQPLA*GAVKRKAREPERSSWEACAEFPVERSDLAASGAPSANAKRPA 193 +A G A A PLA V+ + E R+ E A P + AAS + + A PA Sbjct: 23 TAGAAGPTAQEAEPPLAAVLVEEEEEEGGRAGAEGGAAGPDDGGVAAASSSSAPAASVPA 82 Query: 192 AEAASA 175 A SA Sbjct: 83 ASVGSA 88
>HPPD_RAT (P32755) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (4-hydroxyphenylpyruvic acid oxidase) (HPPDase) (F protein) (F Alloantigen) Length = 392 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/62 (22%), Positives = 22/62 (35%) Frame = +2 Query: 122 PRSDRFHTLSFHHVEFWCXXXXXXXXXXXXXXXXXXXXXXDLSTGNSAHASQLLRSGSLA 301 P+ +R L FH V FW L TG+ S +++ G + Sbjct: 8 PKPERGRFLHFHSVTFWVGNAKQAASFYCNKMGFEPLAYKGLETGSREVVSHVIKQGKIV 67 Query: 302 FL 307 F+ Sbjct: 68 FV 69
>HPPD_MOUSE (P49429) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (4-hydroxyphenylpyruvic acid oxidase) (HPPDase) (F protein) (F Alloantigen) Length = 392 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/62 (22%), Positives = 22/62 (35%) Frame = +2 Query: 122 PRSDRFHTLSFHHVEFWCXXXXXXXXXXXXXXXXXXXXXXDLSTGNSAHASQLLRSGSLA 301 P+ +R L FH V FW L TG+ S +++ G + Sbjct: 8 PKPERGRFLHFHSVTFWVGNAKQAASFYCNKMGFEPLAYRGLETGSREVVSHVIKQGKIV 67 Query: 302 FL 307 F+ Sbjct: 68 FV 69
>DAX1_MOUSE (Q61066) Nuclear receptor 0B1 (Nuclear receptor DAX-1)| Length = 472 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/49 (28%), Positives = 21/49 (42%) Frame = -1 Query: 267 CAEFPVERSDLAASGAPSANAKRPAAEAASAHQNSTWWKESVWKRSLRG 121 C E + + S SA + EA AH+ WW+ S +S+ G Sbjct: 137 CGEEHPRQGSILYSLLTSAQQTHVSREAPEAHRRGEWWQLSYCTQSVGG 185
>NLK_MOUSE (O54949) Serine/threonine kinase NLK (EC 2.7.11.24) (Nemo-like| kinase) Length = 515 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = -1 Query: 264 AEFPVERSDLAAS--GAPSANAKRPAAEAASAH 172 A+ P+++ DL G PS A R A E A AH Sbjct: 331 AQSPIQQLDLITDLLGTPSLEAMRTACEGAKAH 363
>NLK_HUMAN (Q9UBE8) Serine/threonine kinase NLK (EC 2.7.11.24) (Nemo-like| kinase) (LAK1 protein) Length = 515 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = -1 Query: 264 AEFPVERSDLAAS--GAPSANAKRPAAEAASAH 172 A+ P+++ DL G PS A R A E A AH Sbjct: 331 AQSPIQQLDLITDLLGTPSLEAMRTACEGAKAH 363
>MST3_DROHY (O01395) Axoneme-associated protein mst101(3)| Length = 275 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/77 (25%), Positives = 35/77 (45%) Frame = -1 Query: 390 ENRRAASAEKEGREAVAASQPLA*GAVKRKAREPERSSWEACAEFPVERSDLAASGAPSA 211 + + A A K+ E VAA + A K+K E ++ + EA + E + L +A Sbjct: 197 KKKAAEEAAKKKAEEVAAKKKADEAAAKKKCAEAKKKAEEAALKKMCEEAALKKMCEEAA 256 Query: 210 NAKRPAAEAASAHQNST 160 K+ A A +A + + Sbjct: 257 LQKKCAEAAKNAKKTDS 273
>H101_CHICK (P08284) Histone H1.01| Length = 218 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = -1 Query: 354 REAVAASQPLA*GAVKR---KAREPERSSWEACAEFPVERSDLAASGAPSANAKRPAAEA 184 + A AA +P AVK+ KA++P ++ + A+ P + A +G P AK PA Sbjct: 135 KPAAAAKKPKKAAAVKKSPKKAKKPAAAATKKAAKSPKKA---AKAGRPKKAAKSPAKAK 191 Query: 183 A 181 A Sbjct: 192 A 192
>PME1_CAEEL (Q9N4H4) Poly(ADP-ribose) polymerase pme-1 (EC 2.4.2.30) (Poly| ADP-ribose metabolism enzyme 1) Length = 945 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = -1 Query: 315 AVKRKAREPERSSWEACAEFPVERSDLAASGAPSANAKRPAA 190 A KR++ EP + + E L+A G+P ++ KRPA+ Sbjct: 192 AAKRRSTEPATPASASPTPPEAETPVLSAEGSPESSNKRPAS 233 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.303 0.127 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,389,582 Number of Sequences: 219361 Number of extensions: 215727 Number of successful extensions: 753 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 729 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 751 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.8 bits)
