ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast61e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UMP6_ARATH (Q9SX77) Unknown protein At1g47420, mitochondrial pre... 54 2e-07
2LYAM2_MOUSE (Q00690) E-selectin precursor (Endothelial leukocyte... 29 4.1
3GPT1_YEAST (P32784) Glycerol-3-phosphate O-acyltransferase 1 (EC... 29 5.4
4ISTA_PSEAE (P15025) Transposase for insertion sequence element IS21 28 7.1

>UMP6_ARATH (Q9SX77) Unknown protein At1g47420, mitochondrial precursor|
          Length = 257

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 24/49 (48%), Positives = 33/49 (67%)
 Frame = +2

Query: 275 RMFSSNEKHLPPISDPKIETAFKDLMAASWNELPGSLVEEAKKEVSKAT 421
           R FS +  H+P + D  +  AFKDLMAA W ELP ++V++AK  +SK T
Sbjct: 87  RRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNT 135



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>LYAM2_MOUSE (Q00690) E-selectin precursor (Endothelial leukocyte adhesion|
           molecule 1) (ELAM-1) (Leukocyte-endothelial cell
           adhesion molecule 2) (LECAM2) (CD62E antigen)
          Length = 612

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 427 SSSSFRYFFLCFLNKRTRKLIPAGSHQILKCSLNFRV 317
           +SSS  Y  + +  K+ +K +PA S Q L+   N+ V
Sbjct: 571 TSSSLLYLLMRYFRKKAKKFVPASSCQSLQSFENYHV 607



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>GPT1_YEAST (P32784) Glycerol-3-phosphate O-acyltransferase 1 (EC 2.3.1.15)|
           (G-3-P acyltransferase 1) (Dihydroxyacetone phosphate
           acyltransferase 1) (EC 2.3.1.42) (DHAP-AT 1)
           (Glycerol-3-phosphate / dihydroxyacetone phosphate
           acyltransferase 1)
          Length = 759

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +2

Query: 269 SRRMFSSNEKHLPPISDPKIETAFKDLMAAS----WNELPGSLVEEAKKEVSKATG 424
           +RRM    E +    +DPKI    KD+MA +       LP  LVEEAK   +K  G
Sbjct: 382 NRRMVKGYEFYR---NDPKIADLTKDIMAYNAALRHYNLPDHLVEEAKVNFAKNLG 434



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>ISTA_PSEAE (P15025) Transposase for insertion sequence element IS21|
          Length = 390

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 257 FSWNSRRMFSSNEKHLPPISDPKIETAFKDLMAASWN 367
           F     + F+  ++HL P+ D   +T++ D+   SW+
Sbjct: 273 FKETPEQRFALEQEHLQPLPDTDFDTSYFDIRHVSWD 309


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,361,594
Number of Sequences: 219361
Number of extensions: 575611
Number of successful extensions: 1793
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1793
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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