ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast61e05 |
|---|---|
| Clone Library Name | barley_pub |
>HEM1_SYNPX (Q7U769) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)| Length = 432 Score = 33.1 bits (74), Expect = 0.31 Identities = 19/54 (35%), Positives = 30/54 (55%) Frame = +3 Query: 144 VDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREWRDELSVASPASSLQNSL 305 VDDLQE+ + Q AR ++ + +A L +Q Q EW D L + L++S+ Sbjct: 309 VDDLQEVVARNQEAR-QAMAREAEQLLQQEAQQFLEWWDSLEAVPTINRLRSSM 361
>NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer cells| cyclophilin-related protein) (NK-TR protein) Length = 1453 Score = 31.2 bits (69), Expect = 1.2 Identities = 22/57 (38%), Positives = 29/57 (50%) Frame = -1 Query: 292 REEAGEATLSSSRHSRSIWWTCSSRTAASAERLSLRADWRPEKISWRSSTRVLARSR 122 RE A+ SSS HS W+ S + SA S R +R + S RS +R +RSR Sbjct: 481 RERRSRASSSSSHHSSKRDWSKSDQDDGSASTHSSRDSYRSKSHS-RSDSRGSSRSR 536
>NEF_HV2G1 (P18038) Nef protein (Negative factor) (F-protein) (3'ORF)| Length = 254 Score = 30.4 bits (67), Expect = 2.0 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +3 Query: 369 EEEDDATSKLAQPMQPSRQDDHH 437 E EDD T+ L P Q SR DD H Sbjct: 183 EAEDDETNYLTHPAQTSRHDDEH 205
>PCNT_MOUSE (P48725) Pericentrin| Length = 1920 Score = 30.4 bits (67), Expect = 2.0 Identities = 14/51 (27%), Positives = 30/51 (58%) Frame = +3 Query: 129 RAKTRVDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREWRDELSVASP 281 R + +D+L+ + LQ +++ + D A EQ+H+++ + + ELS+ P Sbjct: 1432 RRNSEIDELKSLIENLQENQRQLQK-DKAEEIEQLHEVIEKLQSELSLMGP 1481
>DMBT1_PIG (Q4A3R3) Deleted in malignant brain tumors 1 protein precursor| Length = 1204 Score = 29.6 bits (65), Expect = 3.5 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 14/86 (16%) Frame = -1 Query: 316 WLFPSEFWR-------EEAGEATLSSSRHSRSI--WWTCSSRTAASAERLSLRADWRP-- 170 W P W+ E+AG + R S I WW ++R+ + R ++ A W P Sbjct: 161 WSCPHSGWKTHNCGHQEDAGVICSGAQRSSTVIPDWWYTTTRSQTAHIRSTIPAWWHPTT 220 Query: 169 ---EKISWRSSTRVLARSRNCWWRVD 101 + W + R++ C RV+ Sbjct: 221 TTAARTEWDLALRLVNGGDRCQGRVE 246
>PCNT_HUMAN (O95613) Pericentrin (Pericentrin B) (Kendrin)| Length = 3336 Score = 29.6 bits (65), Expect = 3.5 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 9/96 (9%) Frame = +3 Query: 138 TRVDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREWRDELSVASP---------ASS 290 + +++L+ LQ +K + A +E Q+H+++ + + ELS+ P A S Sbjct: 1712 SEIEELKATIENLQENQKRLQKEKAEEIE-QLHEVIEKLQHELSLMGPVVHEVSDSQAGS 1770 Query: 291 LQNSLGNNQGAADPPSETLRLLQLAIEEEDDATSKL 398 LQ+ L +Q A P + L+ A E +A S+L Sbjct: 1771 LQSELLCSQ-AGGPRGQALQGELEAALEAKEALSRL 1805
>METH_SYNY3 (Q55786) Methionine synthase (EC 2.1.1.13)| (5-methyltetrahydrofolate--homocysteine methyltransferase) (Methionine synthase, vitamin-B12 dependent isozyme) (MS) Length = 1195 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = +3 Query: 150 DLQEIFSG---LQSARKESRSADAAVLEEQVHQMLREWRDEL 266 DLQ +F G + R++SR L E+VH +L EW+ ++ Sbjct: 945 DLQALFVGQWQFRKPREQSREEYEQFLAEKVHPILAEWKGKV 986
>ECO_DROME (Q9VS50) N-acetyltransferase eco (EC 2.3.1.-) (Establishment of| cohesion 1 homolog) (ECO1 homolog) Length = 1052 Score = 29.6 bits (65), Expect = 3.5 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Frame = +3 Query: 150 DLQEIFSGLQSARKES-----RSADAAVLEEQVHQMLREWRDELSVASPASSLQNSLGNN 314 D+ I + L + R ++ R A V E+VHQ+LR +D + +A P S ++ NN Sbjct: 475 DMDNILNSLSNERLKNLITTKREERAKV--EEVHQILRNAKDPIKMAKPLSVIEADDANN 532
>HEM1_SYNY3 (P28463) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)| Length = 427 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/54 (31%), Positives = 30/54 (55%) Frame = +3 Query: 144 VDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREWRDELSVASPASSLQNSL 305 VDDL+E+ + Q++R++ A+LEE++ WR L SSL++ + Sbjct: 300 VDDLKEVVAQNQASRRQMARQAEALLEEEIAAFDLWWR-SLETVPTISSLRSKV 352
>PER3_MOUSE (O70361) Period circadian protein 3 (mPER3)| Length = 1113 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/62 (32%), Positives = 30/62 (48%) Frame = +3 Query: 129 RAKTRVDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREWRDELSVASPASSLQNSLG 308 R K R L E + + S D A L+EQ+H++L + V + ASS SLG Sbjct: 369 RHKVRTSPLNEDVFATRIKKAASNDKDIAELQEQIHKLLLQ-----PVHASASSGYGSLG 423 Query: 309 NN 314 ++ Sbjct: 424 SS 425
>HEM1_SYNEL (Q8DI53) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)| Length = 426 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +3 Query: 144 VDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREW 254 VDDLQ + + Q AR++ +LEE++ L W Sbjct: 301 VDDLQAVVAQNQEARRQLAQEAEGILEEELETFLAWW 337
>FRAP_RAT (P42346) FKBP12-rapamycin complex-associated protein (FK506-binding| protein 12-rapamycin complex-associated protein 1) (Rapamycin target protein) (RAPT1) (Mammalian target of rapamycin) (MTOR) Length = 2549 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = +3 Query: 138 TRVDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREWRDELS 269 + V LQ+ SGL+S +E+R+ A L+ V LRE E S Sbjct: 17 SNVSVLQQFASGLKSRNEETRAKAAKELQHYVTMELREMSQEES 60
>FRAP_MOUSE (Q9JLN9) FKBP12-rapamycin complex-associated protein (FK506-binding| protein 12-rapamycin complex-associated protein 1) (Rapamycin target protein) (RAPT1) (Mammalian target of rapamycin) (MTOR) Length = 2549 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = +3 Query: 138 TRVDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREWRDELS 269 + V LQ+ SGL+S +E+R+ A L+ V LRE E S Sbjct: 17 SNVSVLQQFASGLKSRNEETRAKAAKELQHYVTMELREMSQEES 60
>FRAP_HUMAN (P42345) FKBP12-rapamycin complex-associated protein (FK506-binding| protein 12-rapamycin complex-associated protein 1) (Rapamycin target protein) (RAPT1) (Mammalian target of rapamycin) (MTOR) Length = 2549 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = +3 Query: 138 TRVDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREWRDELS 269 + V LQ+ SGL+S +E+R+ A L+ V LRE E S Sbjct: 17 SNVSVLQQFASGLKSRNEETRAKAAKELQHYVTMELREMSQEES 60
>MYSM1_CHICK (Q5F3F2) Protein MYSM1 (Myb-like, SWIRM and MPN domain-containing| protein 1) Length = 832 Score = 28.9 bits (63), Expect = 5.9 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = +3 Query: 300 SLGNNQGAADPPSETLRLLQLAIEEEDDATSKLAQPMQPSRQ 425 S GN +G ADP +++ +L+ +EE D T + + P+ Q Sbjct: 197 SAGNLRGRADPNLNAVKIEKLSDDEEVDITDDMDELFSPAFQ 238
>NRFA_WOLSU (Q9S1E5) Cytochrome c-552 precursor (EC 1.7.2.2) (Ammonia-forming| cytochrome c nitrite reductase) (Cytochrome c nitrite reductase) Length = 507 Score = 28.9 bits (63), Expect = 5.9 Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 10/107 (9%) Frame = +3 Query: 114 QQFRDRAKT---RVDDLQEI-FSGLQSARKESRSA------DAAVLEEQVHQMLREWRDE 263 Q+ +D K R + LQ+I F + A E+ A DA + E + H +WR + Sbjct: 335 QKLKDIVKQKFERKEFLQDIAFDNIGKAHLETGKAMELGATDAELKEIRTHIRHAQWRAD 394 Query: 264 LSVASPASSLQNSLGNNQGAADPPSETLRLLQLAIEEEDDATSKLAQ 404 +++A S P E LRLL EE A KL + Sbjct: 395 MAIAGHGSFFH-----------APEEVLRLLASGNEEAQKARIKLVK 430
>MDL2_YEAST (P33311) ATP-dependent permease MDL2, mitochondrial precursor| (Multidrug resistance-like protein 2) Length = 773 Score = 28.5 bits (62), Expect = 7.7 Identities = 19/56 (33%), Positives = 28/56 (50%) Frame = +3 Query: 273 ASPASSLQNSLGNNQGAADPPSETLRLLQLAIEEEDDATSKLAQPMQPSRQDDHHN 440 A+P S+L L N+ AA PS+ ++ IE+ED SK + DD+ N Sbjct: 675 ANPTSALSQLL--NEKAAPGPSDQQLQIEKVIEKEDLNESKEHDDQKKDDNDDNDN 728
>TRH_CHICK (Q6ZXC3) Thyroliberin precursor [Contains: Prothyroliberin;| Thyroliberin (Thyrotropin-releasing hormone) (TRH) (Thyrotropin-releasing factor) (TRF) (TSH-releasing factor) (Protirelin); Thyroliberin-like] Length = 260 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 2/90 (2%) Frame = +3 Query: 174 LQSARKESRSADAAVLEEQVHQMLREWRDELSVASPASSLQNSLGNNQGAADPPSET--L 347 L K ++ + H R W DEL ++ GN +D P T Sbjct: 156 LNELSKRQHPGRRYLMYKHQHPSKRGWNDELDLSDQNWEKHQQFGNRDRDSDSPDYTGPC 215 Query: 348 RLLQLAIEEEDDATSKLAQPMQPSRQDDHH 437 L Q AI +D LA+ ++ H Sbjct: 216 DLQQSAICNKDSLLLDLAEKFSKEGVEEKH 245
>NEF_HV2BE (P18092) Nef protein (Negative factor) (F-protein) (3'ORF)| Length = 256 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +3 Query: 354 LQLAIEEEDDATSKLAQPMQPSRQDDHH 437 ++L+ E E+D + L P Q SR DD H Sbjct: 179 VELSQEAEEDEANCLVHPAQTSRHDDEH 206
>NRFA_SALTY (Q8ZKF5) Cytochrome c-552 precursor (EC 1.7.2.2) (Ammonia-forming| cytochrome c nitrite reductase) (Cytochrome c nitrite reductase) Length = 478 Score = 28.5 bits (62), Expect = 7.7 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 7/97 (7%) Frame = +3 Query: 135 KTRVDDLQ-EIFSGLQSARKESRSA-DAAVLEEQVHQMLRE-----WRDELSVASPASSL 293 K + DL+ ++ L A E+++A DA + ++ +L + WR +L++AS + Sbjct: 333 KQAIHDLKIKVEDQLVHAHFEAKAAWDAGATDAEMKPILNDIRHAQWRWDLAIASHGIHM 392 Query: 294 QNSLGNNQGAADPPSETLRLLQLAIEEEDDATSKLAQ 404 P E LR+L A+++ DA +KLA+ Sbjct: 393 H-----------APEEGLRMLGSAMDKAADARTKLAR 418
>NRFA_SALTI (Q8Z1Q9) Cytochrome c-552 precursor (EC 1.7.2.2) (Ammonia-forming| cytochrome c nitrite reductase) (Cytochrome c nitrite reductase) Length = 478 Score = 28.5 bits (62), Expect = 7.7 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 7/97 (7%) Frame = +3 Query: 135 KTRVDDLQ-EIFSGLQSARKESRSA-DAAVLEEQVHQMLRE-----WRDELSVASPASSL 293 K + DL+ ++ L A E+++A DA + ++ +L + WR +L++AS + Sbjct: 333 KQAIHDLKIKVEDQLVHAHFEAKAAWDAGATDAEMKPILNDIRHAQWRWDLAIASHGIHM 392 Query: 294 QNSLGNNQGAADPPSETLRLLQLAIEEEDDATSKLAQ 404 P E LR+L A+++ DA +KLA+ Sbjct: 393 H-----------APEEGLRMLGSAMDKAADARTKLAR 418
>DMD_CHICK (P11533) Dystrophin| Length = 3660 Score = 28.5 bits (62), Expect = 7.7 Identities = 19/80 (23%), Positives = 38/80 (47%) Frame = +3 Query: 189 KESRSADAAVLEEQVHQMLREWRDELSVASPASSLQNSLGNNQGAADPPSETLRLLQLAI 368 ++S +ADA VL+EQ+ + W++ + + + + E L L L + Sbjct: 2174 EQSSAADANVLKEQLGNLNTRWQE---ICRQLVEKRKRIEEEKNILSEFQEDLNKLILWL 2230 Query: 369 EEEDDATSKLAQPMQPSRQD 428 EE ++ +A P++P +D Sbjct: 2231 EETENV---IAIPLEPGNED 2247
>CEF1_ASHGO (Q756C3) Pre-mRNA-splicing factor CEF1| Length = 477 Score = 28.5 bits (62), Expect = 7.7 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = +3 Query: 105 TRHQQFRDRAKTRVDDLQEIFSGLQSARKESRSADAAVLEEQVHQMLREW--RDELSVAS 278 T ++ RDRA + Q G ++ARK+SR+ A EQ +R R L + Sbjct: 213 TANEAARDRAAREAYERQIEARGKRTARKQSRAPARAPATEQPALQVRRAIPRPPLELPV 272 Query: 279 PASSLQNS 302 P + L+NS Sbjct: 273 PEALLKNS 280 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,565,266 Number of Sequences: 219361 Number of extensions: 344149 Number of successful extensions: 2176 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2128 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2175 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
