ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast61d11 |
|---|---|
| Clone Library Name | barley_pub |
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 44.7 bits (104), Expect = 1e-04 Identities = 34/121 (28%), Positives = 54/121 (44%) Frame = +3 Query: 81 MADTLDMSLDDIITKNKPHHRRGRHNPXXXXXXXXXXXXXXXXXXXXXXXXXXPYHQLSL 260 MAD +DMSLDDII N+ R R PY S Sbjct: 1 MADKMDMSLDDIIKLNRNQRRVNRGG---------GPRRNRPAIARGGRNRPAPY---SR 48 Query: 261 QQQVPPAFGYVAQSMAMVTAPSALDSPTKLYISNLDYNVSNEDIKELFSEMGDIQRYSIN 440 + +P + + +++ KL +SNLD+ VS+ DI+ELF+E G +++ +++ Sbjct: 49 PKPLPDKWQHDLFDSGC-GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVD 107 Query: 441 Y 443 Y Sbjct: 108 Y 108
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 41.2 bits (95), Expect = 0.001 Identities = 16/40 (40%), Positives = 31/40 (77%) Frame = +3 Query: 324 SALDSPTKLYISNLDYNVSNEDIKELFSEMGDIQRYSINY 443 + +++ KL +SNLD+ VS+ DI+ELF+E G +++ +++Y Sbjct: 99 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY 138
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 41.2 bits (95), Expect = 0.001 Identities = 16/40 (40%), Positives = 31/40 (77%) Frame = +3 Query: 324 SALDSPTKLYISNLDYNVSNEDIKELFSEMGDIQRYSINY 443 + +++ KL +SNLD+ VS+ DI+ELF+E G +++ +++Y Sbjct: 98 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY 137
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 35.0 bits (79), Expect = 0.086 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = +3 Query: 345 KLYISNLDYNVSNEDIKELFSEMGDIQRYSIN 440 +LYI NL +V+ E++KELFS G+I IN Sbjct: 114 RLYIGNLTSDVTEEELKELFSPYGEISEAFIN 145
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 34.7 bits (78), Expect = 0.11 Identities = 14/39 (35%), Positives = 25/39 (64%) Frame = +3 Query: 327 ALDSPTKLYISNLDYNVSNEDIKELFSEMGDIQRYSINY 443 ++DS ++Y+ NL + V + +KELFSE G++ + Y Sbjct: 202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVY 240
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 34.7 bits (78), Expect = 0.11 Identities = 15/31 (48%), Positives = 22/31 (70%) Frame = +3 Query: 330 LDSPTKLYISNLDYNVSNEDIKELFSEMGDI 422 ++SP K+YI NL V+NE +K+ FSE G + Sbjct: 180 VESPYKVYIGNLAKTVTNELLKDFFSEKGKV 210
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 34.7 bits (78), Expect = 0.11 Identities = 14/39 (35%), Positives = 25/39 (64%) Frame = +3 Query: 327 ALDSPTKLYISNLDYNVSNEDIKELFSEMGDIQRYSINY 443 ++DS ++Y+ NL + V + +KELFSE G++ + Y Sbjct: 203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVY 241
>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap| binding protein) (NCBP 20 kDa subunit) (CBP20) (Fragment) Length = 148 Score = 34.3 bits (77), Expect = 0.15 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +3 Query: 324 SALDSPTKLYISNLDYNVSNEDIKELFSEMGDIQR 428 S L LY+ NL + + E I ELFS+ GD++R Sbjct: 26 SLLKQSCTLYVGNLSFYTTEEQIHELFSKSGDVKR 60
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 33.9 bits (76), Expect = 0.19 Identities = 13/27 (48%), Positives = 22/27 (81%) Frame = +3 Query: 342 TKLYISNLDYNVSNEDIKELFSEMGDI 422 + LY+ NLD +V++E +KE+FSE G++ Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNV 354 Score = 30.8 bits (68), Expect = 1.6 Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 5/69 (7%) Frame = +3 Query: 246 HQLSLQQQVPPAFGYVAQSMAMVTAPSALDS-----PTKLYISNLDYNVSNEDIKELFSE 410 +Q ++ PP F V+Q A+ A +A ++ + LY+ +LD +V+ + +LF++ Sbjct: 8 NQPTVAAAAPPPFPAVSQVAAVAAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQ 67 Query: 411 MGDIQRYSI 437 + + + Sbjct: 68 VAPVHNLRV 76
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 33.9 bits (76), Expect = 0.19 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +3 Query: 330 LDSPTKLYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 LDS K+YISNL N+ + + EL GD+ + + Sbjct: 306 LDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQL 341
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 33.1 bits (74), Expect = 0.33 Identities = 13/25 (52%), Positives = 20/25 (80%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDI 422 LY+ NLD +V +E +KE+FSE G++ Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNV 358
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 32.7 bits (73), Expect = 0.43 Identities = 11/27 (40%), Positives = 21/27 (77%) Frame = +3 Query: 345 KLYISNLDYNVSNEDIKELFSEMGDIQ 425 +L +SN+ +N+++ED+K +F GDI+ Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIE 367
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 32.3 bits (72), Expect = 0.56 Identities = 12/27 (44%), Positives = 20/27 (74%) Frame = +3 Query: 342 TKLYISNLDYNVSNEDIKELFSEMGDI 422 + LY+ NLD ++S+E +KE+FS G + Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTV 344 Score = 31.6 bits (70), Expect = 0.95 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Frame = +3 Query: 249 QLSLQQQVPPAFGYVAQSMAMVTAPSALDSP---TKLYISNLDYNVSNEDIKELFSEMGD 419 Q+ LQ Q P A + A T+ A + T LY+ +LD+NV++ + + F +MG Sbjct: 3 QVQLQGQTPNG-STAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGT 61 Query: 420 I 422 + Sbjct: 62 V 62
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 32.0 bits (71), Expect = 0.73 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQR 428 LY+ NL + + E I ELFS+ GDI++ Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKK 68
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 32.0 bits (71), Expect = 0.73 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQR 428 LY+ NL + + E I ELFS+ GDI++ Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKK 68
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 32.0 bits (71), Expect = 0.73 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQR 428 LY+ NL + + E I ELFS+ GDI++ Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKK 68
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 32.0 bits (71), Expect = 0.73 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = +3 Query: 288 YVAQSMAMVTAPSALDSPTKLYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 YV + M + T LY+ NLD +VS + ++E F+E G I +I Sbjct: 183 YVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI 232
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.0 bits (71), Expect = 0.73 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 +YI NLD +++E +KE FS G I R + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKV 333
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.0 bits (71), Expect = 0.73 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 +YI NLD +++E +KE FS G I R + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKV 333
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.0 bits (71), Expect = 0.73 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 +YI NLD +++E +KE FS G I R + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKV 333
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.0 bits (71), Expect = 0.73 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 +YI NLD +++E +KE FS G I R + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKV 333
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.0 bits (71), Expect = 0.73 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 +YI NLD +++E +KE FS G I R + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKV 333
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.0 bits (71), Expect = 0.73 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 +YI NLD +++E +KE FS G I R + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKV 333
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 32.0 bits (71), Expect = 0.73 Identities = 13/48 (27%), Positives = 26/48 (54%) Frame = +3 Query: 300 SMAMVTAPSALDSPTKLYISNLDYNVSNEDIKELFSEMGDIQRYSINY 443 S V P+ S +++ N+ Y + E +K++FSE+G + + + Y Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVY 49
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 32.0 bits (71), Expect = 0.73 Identities = 13/48 (27%), Positives = 26/48 (54%) Frame = +3 Query: 300 SMAMVTAPSALDSPTKLYISNLDYNVSNEDIKELFSEMGDIQRYSINY 443 S V P+ S +++ N+ Y + E +K++FSE+G + + + Y Sbjct: 2 SSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVY 49
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 32.0 bits (71), Expect = 0.73 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 +Y+ NL Y+VS D+ +F+E G ++R + Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQL 32
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 31.6 bits (70), Expect = 0.95 Identities = 12/44 (27%), Positives = 25/44 (56%) Frame = +3 Query: 312 VTAPSALDSPTKLYISNLDYNVSNEDIKELFSEMGDIQRYSINY 443 V P+ S +++ N+ Y + E +K++FSE+G + + + Y Sbjct: 6 VRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVY 49
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 31.6 bits (70), Expect = 0.95 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQR 428 L++ NLD+ ++ D+KE F ++G I+R Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRR 256
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 31.6 bits (70), Expect = 0.95 Identities = 12/44 (27%), Positives = 25/44 (56%) Frame = +3 Query: 312 VTAPSALDSPTKLYISNLDYNVSNEDIKELFSEMGDIQRYSINY 443 V P+ S +++ N+ Y + E +K++FSE+G + + + Y Sbjct: 6 VRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVY 49
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 31.6 bits (70), Expect = 0.95 Identities = 12/44 (27%), Positives = 25/44 (56%) Frame = +3 Query: 312 VTAPSALDSPTKLYISNLDYNVSNEDIKELFSEMGDIQRYSINY 443 V P+ S +++ N+ Y + E +K++FSE+G + + + Y Sbjct: 6 VRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVY 49
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 31.6 bits (70), Expect = 0.95 Identities = 12/44 (27%), Positives = 25/44 (56%) Frame = +3 Query: 312 VTAPSALDSPTKLYISNLDYNVSNEDIKELFSEMGDIQRYSINY 443 V P+ S +++ N+ Y + E +K++FSE+G + + + Y Sbjct: 6 VRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVY 49
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 30.8 bits (68), Expect = 1.6 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +3 Query: 342 TKLYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 T +YI NLD ++ ++ +LF + G+I S+ Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSL 292
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 30.8 bits (68), Expect = 1.6 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Frame = +3 Query: 264 QQVPPAFGYVAQSM---AMVTAP-----SALDSPTKLYISNLDYNVSNEDIKELFSEMGD 419 QQ P A S A VT P S D P +L++SN+ + + D+K +F + G Sbjct: 119 QQGQPVVATTAGSTNGSAAVTQPDPSTSSGPDGPKRLHVSNIPFRFRDPDLKTMFEKFGV 178 Query: 420 IQRYSINYXQ 449 + I + + Sbjct: 179 VSDVEIIFNE 188
>NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2| Length = 208 Score = 30.8 bits (68), Expect = 1.6 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQR 428 +Y+ NL + S E I ELFS+ G I+R Sbjct: 48 IYVGNLSFYTSEEQIYELFSKCGTIKR 74
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 30.4 bits (67), Expect = 2.1 Identities = 10/33 (30%), Positives = 20/33 (60%) Frame = +3 Query: 345 KLYISNLDYNVSNEDIKELFSEMGDIQRYSINY 443 KL++ NL +NV + + +LF G+++ + Y Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIY 132
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 30.0 bits (66), Expect = 2.8 Identities = 10/30 (33%), Positives = 21/30 (70%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 +Y+ N+DY+V+ E+++ F+ G + R +I Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTI 86
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 30.0 bits (66), Expect = 2.8 Identities = 10/33 (30%), Positives = 21/33 (63%) Frame = +3 Query: 345 KLYISNLDYNVSNEDIKELFSEMGDIQRYSINY 443 +LY+ NL +++++ + E+F+E G + I Y Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVY 147 Score = 29.6 bits (65), Expect = 3.6 Identities = 10/38 (26%), Positives = 24/38 (63%) Frame = +3 Query: 330 LDSPTKLYISNLDYNVSNEDIKELFSEMGDIQRYSINY 443 +DSP KLY++NL + ++++ +++ F++ + Y Sbjct: 213 VDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIY 250
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 30.0 bits (66), Expect = 2.8 Identities = 12/44 (27%), Positives = 24/44 (54%) Frame = +3 Query: 309 MVTAPSALDSPTKLYISNLDYNVSNEDIKELFSEMGDIQRYSIN 440 M + +DS K++I L ++ + +KEL G ++ +S+N Sbjct: 280 MPVSTIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLN 323
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 30.0 bits (66), Expect = 2.8 Identities = 10/33 (30%), Positives = 20/33 (60%) Frame = +3 Query: 345 KLYISNLDYNVSNEDIKELFSEMGDIQRYSINY 443 KL++ NL +NV + + +LF G+++ + Y Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIY 124
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 30.0 bits (66), Expect = 2.8 Identities = 13/46 (28%), Positives = 25/46 (54%) Frame = +3 Query: 285 GYVAQSMAMVTAPSALDSPTKLYISNLDYNVSNEDIKELFSEMGDI 422 G+ S A +A K++I L ++ + +D+K+ FS+ GD+ Sbjct: 76 GHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDV 121
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 30.0 bits (66), Expect = 2.8 Identities = 12/44 (27%), Positives = 24/44 (54%) Frame = +3 Query: 309 MVTAPSALDSPTKLYISNLDYNVSNEDIKELFSEMGDIQRYSIN 440 M + +DS K++I L ++ + +KEL G ++ +S+N Sbjct: 271 MPVSSIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLN 314
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 29.6 bits (65), Expect = 3.6 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +3 Query: 342 TKLYISNLDYNVSNEDIKELFSEMGDIQ 425 TK+ I NL + + DI++LFS G ++ Sbjct: 719 TKILIKNLPFEATKRDIRDLFSSQGQLK 746
>PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein| Length = 138 Score = 29.6 bits (65), Expect = 3.6 Identities = 10/30 (33%), Positives = 20/30 (66%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 LYI NL Y ++ E++ E+F + G +++ + Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAVRQIRV 50
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 29.6 bits (65), Expect = 3.6 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +3 Query: 345 KLYISNLDYNVSNEDIKELFSEMGDI 422 KL+I LDY ++E +K+ F + G+I Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEI 43
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 29.6 bits (65), Expect = 3.6 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +3 Query: 339 PTKLYISNLDYNVSNEDIKELFSEMGDIQ 425 PTK++I L NV+ + I E+FS G I+ Sbjct: 160 PTKVHIGRLTRNVTKDHIMEIFSTYGKIK 188
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 29.6 bits (65), Expect = 3.6 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +3 Query: 339 PTKLYISNLDYNVSNEDIKELFSEMGDIQ 425 PTK++I L NV+ + I E+FS G I+ Sbjct: 160 PTKVHIGRLTRNVTKDHIMEIFSTYGKIK 188
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 29.6 bits (65), Expect = 3.6 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +3 Query: 339 PTKLYISNLDYNVSNEDIKELFSEMGDIQ 425 PTK++I L NV+ + I E+FS G I+ Sbjct: 160 PTKVHIGRLTRNVTKDHIMEIFSTYGKIK 188
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 29.6 bits (65), Expect = 3.6 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +3 Query: 339 PTKLYISNLDYNVSNEDIKELFSEMGDIQ 425 PTK++I L NV+ + I E+FS G I+ Sbjct: 160 PTKVHIGRLTRNVTKDHIMEIFSTYGKIK 188
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 29.6 bits (65), Expect = 3.6 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +3 Query: 339 PTKLYISNLDYNVSNEDIKELFSEMGDIQ 425 PTK++I L NV+ + I E+FS G I+ Sbjct: 160 PTKVHIGRLTRNVTKDHIMEIFSTYGKIK 188
>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2| Length = 218 Score = 29.6 bits (65), Expect = 3.6 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQR 428 +Y+ NL + S E + ELFS+ G I++ Sbjct: 48 IYVGNLSFYTSEEQLYELFSKCGSIEK 74
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 29.6 bits (65), Expect = 3.6 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 +++ NL Y+ + ED+ E FS++G + R I Sbjct: 138 IFVGNLTYDSTPEDLTEFFSQIGKVVRADI 167
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 29.3 bits (64), Expect = 4.7 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +3 Query: 342 TKLYISNLDYNVSNEDIKELFSEMG 416 T +YI N V +E +KELFS+ G Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFG 215
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 29.3 bits (64), Expect = 4.7 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%) Frame = +3 Query: 288 YVAQSMAMVTAPSALDSP----TKLYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 YVA ++ S L+ T LY+ N++ ++E +ELF++ G I S+ Sbjct: 196 YVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASL 249
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 29.3 bits (64), Expect = 4.7 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +3 Query: 318 APSALDSPTKLYISNLDYNVSNEDIKELFSEMGDI 422 A A + TKL + NL + V+ ++++ LFS G + Sbjct: 696 AKKAANQGTKLVVKNLPFEVTKKEVRTLFSAYGKL 730
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 29.3 bits (64), Expect = 4.7 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +3 Query: 339 PTKLYISNLDYNVSNEDIKELFSEMGDIQ 425 PTK++I L NV+ + I E+FS G I+ Sbjct: 137 PTKVHIGRLTRNVTKDHILEIFSTYGKIK 165
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 29.3 bits (64), Expect = 4.7 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +3 Query: 345 KLYISNLDYNVSNEDIKELFSEMGDI 422 +L++ NL Y S ED+++LFS G + Sbjct: 401 RLFVRNLSYTSSEEDLEKLFSAYGPL 426
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 29.3 bits (64), Expect = 4.7 Identities = 10/33 (30%), Positives = 21/33 (63%) Frame = +3 Query: 345 KLYISNLDYNVSNEDIKELFSEMGDIQRYSINY 443 KL++ NL Y++ +E + +LF + G ++ + Y Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIY 130
>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein| Length = 124 Score = 29.3 bits (64), Expect = 4.7 Identities = 10/30 (33%), Positives = 22/30 (73%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 LY+ NL +N+++E++ ++F + G I++ I Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRI 50
>NONA_DROVI (Q9GRW7) Protein no-on-transient A| Length = 697 Score = 28.9 bits (63), Expect = 6.2 Identities = 9/26 (34%), Positives = 20/26 (76%) Frame = +3 Query: 345 KLYISNLDYNVSNEDIKELFSEMGDI 422 +LY+ NL ++++E+++E+F G+I Sbjct: 286 RLYVGNLTNDITDEELREMFKPYGEI 311
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 28.9 bits (63), Expect = 6.2 Identities = 11/30 (36%), Positives = 21/30 (70%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 ++++NLD+ V + +KE+FS G ++R I Sbjct: 226 IFVANLDFKVGWKKLKEVFSIAGTVKRADI 255
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 28.9 bits (63), Expect = 6.2 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = +3 Query: 345 KLYISNLDYNVSNEDIKELFSEMGDIQRYSINY 443 KL++ NL Y+V +E + LF + G ++ + Y Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIY 169
>NONA_DROLR (Q9GRX4) Protein no-on-transient A| Length = 698 Score = 28.9 bits (63), Expect = 6.2 Identities = 9/26 (34%), Positives = 20/26 (76%) Frame = +3 Query: 345 KLYISNLDYNVSNEDIKELFSEMGDI 422 +LY+ NL ++++E+++E+F G+I Sbjct: 282 RLYVGNLTNDITDEELREMFKPYGEI 307
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 28.9 bits (63), Expect = 6.2 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +3 Query: 312 VTAPSALDSPTKLYISNLDYNVSNEDIKELFSEMGDIQ 425 VT PS D +++ NLD+ E + + F GDI+ Sbjct: 349 VTHPSPHDKRRSVFVGNLDFEEVEESLWKHFEPCGDIE 386
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 28.9 bits (63), Expect = 6.2 Identities = 11/30 (36%), Positives = 21/30 (70%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 ++++NLD+ V + +KE+FS G ++R I Sbjct: 235 IFVANLDFKVGWKKLKEVFSIAGTVKRADI 264
>MLO3_SCHPO (Q09330) Protein mlo3| Length = 199 Score = 28.9 bits (63), Expect = 6.2 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = +3 Query: 324 SALDSPTKLYISNLDYNVSNEDIKELF-SEMGDIQRYSINY 443 S + +K+ +SNL +V+ +KELF +G +R S+ Y Sbjct: 49 SVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAY 89
>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein| crp79) (Poly(A)-binding protein) (PABP) (Meiotic expression up-regulated protein 5) Length = 710 Score = 28.5 bits (62), Expect = 8.1 Identities = 10/31 (32%), Positives = 21/31 (67%) Frame = +3 Query: 333 DSPTKLYISNLDYNVSNEDIKELFSEMGDIQ 425 D + +Y+ N+D +S+E+I + FS+ G ++ Sbjct: 14 DESSTIYVGNIDSRLSDEEIIKHFSKYGQVE 44
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 28.5 bits (62), Expect = 8.1 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 ++++NLDY V + +KE+FS G + R I Sbjct: 165 VFVANLDYKVGWKKLKEVFSMAGVVVRADI 194
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 28.5 bits (62), Expect = 8.1 Identities = 10/33 (30%), Positives = 20/33 (60%) Frame = +3 Query: 324 SALDSPTKLYISNLDYNVSNEDIKELFSEMGDI 422 S D KL++ LD++ + E ++ FS+ G++ Sbjct: 4 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEV 36
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 28.5 bits (62), Expect = 8.1 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 ++++NLDY V + +KE+FS G + R I Sbjct: 204 VFVANLDYKVGWKKLKEVFSMAGVVVRADI 233
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 28.5 bits (62), Expect = 8.1 Identities = 10/26 (38%), Positives = 19/26 (73%) Frame = +3 Query: 345 KLYISNLDYNVSNEDIKELFSEMGDI 422 +L++ NL Y + ED+++LFS+ G + Sbjct: 403 RLFVRNLPYTSTEEDLEKLFSKYGPL 428
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/59 (27%), Positives = 31/59 (52%) Frame = +3 Query: 249 QLSLQQQVPPAFGYVAQSMAMVTAPSALDSPTKLYISNLDYNVSNEDIKELFSEMGDIQ 425 Q +QQQV A A + + ++ T L ++ L ++ ++I+ LFS +G+I+ Sbjct: 154 QQQVQQQVQQANTNGNSGGAQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIE 212
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 28.5 bits (62), Expect = 8.1 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 ++++NLDY V + +KE+FS G + R I Sbjct: 205 VFVANLDYKVGWKKLKEVFSMAGVVVRADI 234
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 28.5 bits (62), Expect = 8.1 Identities = 7/30 (23%), Positives = 22/30 (73%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDIQRYSI 437 +++ N+ Y+VS + + E+F+++G ++ + + Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKL 38
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 28.5 bits (62), Expect = 8.1 Identities = 9/25 (36%), Positives = 19/25 (76%) Frame = +3 Query: 348 LYISNLDYNVSNEDIKELFSEMGDI 422 +++ NL ++ + ED+KELF +G++ Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEV 148 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,495,532 Number of Sequences: 219361 Number of extensions: 517696 Number of successful extensions: 1700 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 1634 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1700 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
