ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast61c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
2dbj|AP003524.3| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
3ref|XM_471042.1| Oryza sativa (japonica cultivar-group), predic... 62 2e-06
4emb|AL606631.2|OSJN00069 Oryza sativa genomic DNA, chromosome 4,... 62 2e-06
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
6dbj|AK064965.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
7dbj|AK067625.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
8dbj|AK060501.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
9gb|AC087644.8| Homo sapiens chromosome 17, clone RP11-403E9, com... 42 1.5
10gb|AC104984.14| Homo sapiens chromosome 17, clone RP11-354P11, c... 42 1.5
11ref|XM_688097.1| PREDICTED: Danio rerio similar to Protein C20or... 42 1.5
12gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.5
13emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.5
14emb|BX004975.9| Zebrafish DNA sequence from clone DKEY-14B16, co... 42 1.5
15ref|XM_512560.1| PREDICTED: Pan troglodytes similar to KIAA0390 ... 40 5.8
16gb|AC185534.1| Drosophila melanogaster clone BACR39I04, complete... 40 5.8
17gb|AC130686.15| Homo sapiens chromosome 17, clone RP13-415G19, c... 40 5.8
18gb|AC019349.28| Homo sapiens chromosome 17, clone RP11-156A24, c... 40 5.8
19gb|AC105208.15| Homo sapiens chromosome 17, clone CTD-3226O14, c... 40 5.8 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                            
Query: 142      ggacctccgcctgcgctacggcacgtgggccgttgtcaccggcccgacgtctggcatcgg 201
                |||||||||||  || |||||| |||||||||| |||||||| |||||||| ||||||||
Sbjct: 11023999 ggacctccgccgccggtacggctcgtgggccgtcgtcaccgggccgacgtcaggcatcgg 11023940

                                     
Query: 202      ccggtccatcgccctggagct 222
                |||  |||| || ||||||||
Sbjct: 11023939 ccgtgccatggcgctggagct 11023919



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                            
Query: 167      tgggccgttgtcaccggcccgacgtctggcatcggccggtccatcgccctggagcttgca 226
                |||||||| |||||||| || ||||| |||||||||||  |||| || |||||||| || 
Sbjct: 10977088 tgggccgtcgtcaccgggccaacgtccggcatcggccgtgccatggcgctggagctcgcg 10977029

                                 
Query: 227      cgccggggcatcaacct 243
                ||||  ||| |||||||
Sbjct: 10977028 cgccacggcctcaacct 10977012
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>dbj|AP003524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0501G08
          Length = 173505

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                          
Query: 142    ggacctccgcctgcgctacggcacgtgggccgttgtcaccggcccgacgtctggcatcgg 201
              |||||||||||  || |||||| |||||||||| |||||||| |||||||| ||||||||
Sbjct: 108081 ggacctccgccgccggtacggctcgtgggccgtcgtcaccgggccgacgtcaggcatcgg 108022

                                   
Query: 202    ccggtccatcgccctggagct 222
              |||  |||| || ||||||||
Sbjct: 108021 ccgtgccatggcgctggagct 108001



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                         
Query: 167   tgggccgttgtcaccggcccgacgtctggcatcggccggtccatcgccctggagcttgca 226
             |||||||| |||||||| || ||||| |||||||||||  |||| || |||||||| || 
Sbjct: 61170 tgggccgtcgtcaccgggccaacgtccggcatcggccgtgccatggcgctggagctcgcg 61111

                              
Query: 227   cgccggggcatcaacct 243
             ||||  ||| |||||||
Sbjct: 61110 cgccacggcctcaacct 61094
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>ref|XM_471042.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 960

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 85/103 (82%)
 Strand = Plus / Plus

                                                                       
Query: 141 aggacctccgcctgcgctacggcacgtgggccgttgtcaccggcccgacgtctggcatcg 200
           ||||||||||||   ||||||||  ||||||||| ||||||||||||||| | ||  |||
Sbjct: 119 aggacctccgccgctgctacggcgagtgggccgtggtcaccggcccgacgacggggctcg 178

                                                      
Query: 201 gccggtccatcgccctggagcttgcacgccggggcatcaacct 243
           | || ||||| ||| ||||||| || ||||| ||| |||||||
Sbjct: 179 ggcgatccatggccatggagctcgcccgccgcggcttcaacct 221
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>emb|AL606631.2|OSJN00069 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050O03,
             complete sequence
          Length = 140948

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 85/103 (82%)
 Strand = Plus / Plus

                                                                         
Query: 141   aggacctccgcctgcgctacggcacgtgggccgttgtcaccggcccgacgtctggcatcg 200
             ||||||||||||   ||||||||  ||||||||| ||||||||||||||| | ||  |||
Sbjct: 51530 aggacctccgccgctgctacggcgagtgggccgtggtcaccggcccgacgacggggctcg 51589

                                                        
Query: 201   gccggtccatcgccctggagcttgcacgccggggcatcaacct 243
             | || ||||| ||| ||||||| || ||||| ||| |||||||
Sbjct: 51590 ggcgatccatggccatggagctcgcccgccgcggcttcaacct 51632
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 85/103 (82%)
 Strand = Plus / Plus

                                                                          
Query: 141    aggacctccgcctgcgctacggcacgtgggccgttgtcaccggcccgacgtctggcatcg 200
              ||||||||||||   ||||||||  ||||||||| ||||||||||||||| | ||  |||
Sbjct: 971811 aggacctccgccgctgctacggcgagtgggccgtggtcaccggcccgacgacggggctcg 971870

                                                         
Query: 201    gccggtccatcgccctggagcttgcacgccggggcatcaacct 243
              | || ||||| ||| ||||||| || ||||| ||| |||||||
Sbjct: 971871 ggcgatccatggccatggagctcgcccgccgcggcttcaacct 971913
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>dbj|AK064965.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001B01, full
           insert sequence
          Length = 1810

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 85/103 (82%)
 Strand = Plus / Plus

                                                                       
Query: 141 aggacctccgcctgcgctacggcacgtgggccgttgtcaccggcccgacgtctggcatcg 200
           ||||||||||||   ||||||||  ||||||||| ||||||||||||||| | ||  |||
Sbjct: 172 aggacctccgccgctgctacggcgagtgggccgtggtcaccggcccgacgacggggctcg 231

                                                      
Query: 201 gccggtccatcgccctggagcttgcacgccggggcatcaacct 243
           | || ||||| ||| ||||||| || ||||| ||| |||||||
Sbjct: 232 ggcgatccatggccatggagctcgcccgccgcggcttcaacct 274
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>dbj|AK067625.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013113L03, full
           insert sequence
          Length = 1209

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                       
Query: 167 tgggccgttgtcaccggcccgacgtctggcatcggccggtccatcgccctggagcttgca 226
           |||||||| |||||||| || ||||| |||||||||||  |||| || |||||||| || 
Sbjct: 321 tgggccgtcgtcaccgggccaacgtccggcatcggccgtgccatggcgctggagctcgcg 380

                            
Query: 227 cgccggggcatcaacct 243
           ||||  ||| |||||||
Sbjct: 381 cgccacggcctcaacct 397
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>dbj|AK060501.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-G10, full
           insert sequence
          Length = 1210

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                       
Query: 167 tgggccgttgtcaccggcccgacgtctggcatcggccggtccatcgccctggagcttgca 226
           |||||||| |||||||| || ||||| |||||||||||  |||| || |||||||| || 
Sbjct: 320 tgggccgtcgtcaccgggccaacgtccggcatcggccgtgccatggcgctggagctcgcg 379

                            
Query: 227 cgccggggcatcaacct 243
           ||||  ||| |||||||
Sbjct: 380 cgccacggcctcaacct 396
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>gb|AC087644.8| Homo sapiens chromosome 17, clone RP11-403E9, complete sequence
          Length = 102286

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 50    tttctctggctggcctccctc 70
             |||||||||||||||||||||
Sbjct: 19089 tttctctggctggcctccctc 19109
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>gb|AC104984.14| Homo sapiens chromosome 17, clone RP11-354P11, complete sequence
          Length = 175136

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 50   tttctctggctggcctccctc 70
            |||||||||||||||||||||
Sbjct: 4614 tttctctggctggcctccctc 4594
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>ref|XM_688097.1| PREDICTED: Danio rerio similar to Protein C20orf22 homolog
           (LOC564768), mRNA
          Length = 1455

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 398 aagaagctggatgtggggattctgg 422
           |||||||||||||||| ||||||||
Sbjct: 169 aagaagctggatgtggagattctgg 193
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 193     tggcatcggccggtccatcgccctg 217
               ||||||||||||| |||||||||||
Sbjct: 2216844 tggcatcggccgggccatcgccctg 2216868
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 194     ggcatcggccggtccatcgccctggagct 222
               |||||||||||| | ||||||||||||||
Sbjct: 1105733 ggcatcggccgggcgatcgccctggagct 1105761
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>emb|BX004975.9| Zebrafish DNA sequence from clone DKEY-14B16, complete sequence
          Length = 208909

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 398    aagaagctggatgtggggattctgg 422
              |||||||||||||||| ||||||||
Sbjct: 208082 aagaagctggatgtggagattctgg 208058
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>ref|XM_512560.1| PREDICTED: Pan troglodytes similar to KIAA0390 (LOC455915), mRNA
          Length = 6693

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 401  aagctggatgtggggattctggtg 424
            |||||||||||||||| |||||||
Sbjct: 4297 aagctggatgtggggaatctggtg 4274
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>gb|AC185534.1| Drosophila melanogaster clone BACR39I04, complete sequence
          Length = 119461

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    cggcacgtgggccgttgtca 179
              ||||||||||||||||||||
Sbjct: 105099 cggcacgtgggccgttgtca 105080
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>gb|AC130686.15| Homo sapiens chromosome 17, clone RP13-415G19, complete sequence
          Length = 208462

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    ggccggtccatcgccctgga 219
              ||||||||||||||||||||
Sbjct: 134346 ggccggtccatcgccctgga 134327
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>gb|AC019349.28| Homo sapiens chromosome 17, clone RP11-156A24, complete sequence
          Length = 166320

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   ggccggtccatcgccctgga 219
             ||||||||||||||||||||
Sbjct: 19093 ggccggtccatcgccctgga 19074
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>gb|AC105208.15| Homo sapiens chromosome 17, clone CTD-3226O14, complete sequence
          Length = 65233

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   ggccggtccatcgccctgga 219
             ||||||||||||||||||||
Sbjct: 50102 ggccggtccatcgccctgga 50083


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,252,792
Number of Sequences: 3902068
Number of extensions: 2252792
Number of successful extensions: 40398
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40257
Number of HSP's gapped (non-prelim): 141
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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