ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast61b12 |
|---|---|
| Clone Library Name | barley_pub |
>UCRI_MAIZE (P49727) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 273 Score = 154 bits (388), Expect = 1e-37 Identities = 80/122 (65%), Positives = 96/122 (78%), Gaps = 5/122 (4%) Frame = +3 Query: 111 MLRVAGRRISSHLAWRPXXXXXXGRTPLVG-GLPGEDFPWDQN---PRFAIESPFYVAAR 278 MLRVAGRR+SS L+WRP G PL G G+P D + PRF+I+SPF+VA+R Sbjct: 1 MLRVAGRRLSSSLSWRPAAAVARG--PLAGAGVPDRDDDSARGRSQPRFSIDSPFFVASR 58 Query: 279 GFSA-ESLVPRSQDVGLAELPATAAALKNPCAKIVYDEYNHKRYPPGDPSKRAFAYFVLS 455 GFS+ E++VPR+QD GLA+LPAT AA+KNP K+VYDEYNH+RYPPGDPSKRAFAYFVLS Sbjct: 59 GFSSTETVVPRNQDAGLADLPATVAAVKNPNPKVVYDEYNHERYPPGDPSKRAFAYFVLS 118 Query: 456 GG 461 GG Sbjct: 119 GG 120
>UCRI_SOLTU (P37841) Ubiquinol-cytochrome c reductase iron-sulfur subunit,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 265 Score = 102 bits (255), Expect = 4e-22 Identities = 57/117 (48%), Positives = 74/117 (63%) Frame = +3 Query: 111 MLRVAGRRISSHLAWRPXXXXXXGRTPLVGGLPGEDFPWDQNPRFAIESPFYVAARGFSA 290 MLRVAGRR+SS A + +D ++P ++ S F RGFS+ Sbjct: 1 MLRVAGRRLSSSAARSSSTFFTRSSFTVT-----DDSSPARSPSPSLTSSFLDQIRGFSS 55 Query: 291 ESLVPRSQDVGLAELPATAAALKNPCAKIVYDEYNHKRYPPGDPSKRAFAYFVLSGG 461 S+ P Q +++LPAT AA+KNP +KIVYD+ NH+RYPPGDPSKRAFAYFVL+GG Sbjct: 56 NSVSPAHQLGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGG 112
>UCRI3_TOBAC (P51133) Ubiquinol-cytochrome c reductase iron-sulfur subunit 3,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein 3) (RISP3) Length = 268 Score = 102 bits (253), Expect = 6e-22 Identities = 57/117 (48%), Positives = 73/117 (62%) Frame = +3 Query: 111 MLRVAGRRISSHLAWRPXXXXXXGRTPLVGGLPGEDFPWDQNPRFAIESPFYVAARGFSA 290 MLR+AGR++SS A R R P +P ++ S F RGFS+ Sbjct: 1 MLRIAGRKLSSSAATRSSSAFFT-RNPFTFTDDSSSPARSPSPA-SLASQFLDQFRGFSS 58 Query: 291 ESLVPRSQDVGLAELPATAAALKNPCAKIVYDEYNHKRYPPGDPSKRAFAYFVLSGG 461 S+ P Q +++LPAT AA+KNP +KIVYD+ NH+RYPPGDPSKRAFAYFVL+GG Sbjct: 59 NSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGG 115
>UCRI5_TOBAC (P51135) Ubiquinol-cytochrome c reductase iron-sulfur subunit 5,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein 5) (RISP5) Length = 268 Score = 101 bits (252), Expect = 8e-22 Identities = 57/117 (48%), Positives = 73/117 (62%) Frame = +3 Query: 111 MLRVAGRRISSHLAWRPXXXXXXGRTPLVGGLPGEDFPWDQNPRFAIESPFYVAARGFSA 290 MLR+AGR++SS A R R P +P ++ S F RGFS+ Sbjct: 1 MLRIAGRKLSSSAAARSSSAFFT-RNPFTFTDDSSSPTRSPSPT-SLASQFLDQFRGFSS 58 Query: 291 ESLVPRSQDVGLAELPATAAALKNPCAKIVYDEYNHKRYPPGDPSKRAFAYFVLSGG 461 S+ P Q +++LPAT AA+KNP +KIVYD+ NH+RYPPGDPSKRAFAYFVL+GG Sbjct: 59 NSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGG 115
>UCRI2_TOBAC (P51132) Ubiquinol-cytochrome c reductase iron-sulfur subunit 2,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein 2) (RISP2) Length = 272 Score = 100 bits (249), Expect = 2e-21 Identities = 59/121 (48%), Positives = 74/121 (61%), Gaps = 4/121 (3%) Frame = +3 Query: 111 MLRVAGRRISSHLAWRPXXXXXXGRTPLVGGLPGEDFPWDQNPRF---AIESPFYVAARG 281 MLR+AGRR SS W P + + +PR ++ S F RG Sbjct: 1 MLRIAGRRASSLSRW-PVRSVAPSSSAFISANHFSSDDDSSSPRSISPSLASVFLHHTRG 59 Query: 282 FSAESLVPRSQDVGLA-ELPATAAALKNPCAKIVYDEYNHKRYPPGDPSKRAFAYFVLSG 458 FS+ S V + D+GL +LP T AA+KNP +KIVYDE+NH+RYPPGDPSKRAFAYFVL+G Sbjct: 60 FSSNS-VSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTG 118 Query: 459 G 461 G Sbjct: 119 G 119
>UCRI1_TOBAC (P49729) Ubiquinol-cytochrome c reductase iron-sulfur subunit 1,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein 1) (RISP1) (Fragment) Length = 258 Score = 93.2 bits (230), Expect = 3e-19 Identities = 46/73 (63%), Positives = 58/73 (79%), Gaps = 1/73 (1%) Frame = +3 Query: 246 AIESPFYVAARGFSAESLVPRSQDVGLA-ELPATAAALKNPCAKIVYDEYNHKRYPPGDP 422 ++ S F RGFS+ S+ P + D+GL +LP T AA+KNP +KIVYDE+NH+RYPPGDP Sbjct: 34 SLASVFLHHTRGFSSNSVSP-AHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDP 92 Query: 423 SKRAFAYFVLSGG 461 SKRAFAYFVL+GG Sbjct: 93 SKRAFAYFVLTGG 105
>UCRI4_TOBAC (P51134) Ubiquinol-cytochrome c reductase iron-sulfur subunit 4,| mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein 4) (RISP4) Length = 236 Score = 89.0 bits (219), Expect = 5e-18 Identities = 44/73 (60%), Positives = 56/73 (76%), Gaps = 1/73 (1%) Frame = +3 Query: 246 AIESPFYVAARGFSAESLVPRSQDVGLA-ELPATAAALKNPCAKIVYDEYNHKRYPPGDP 422 ++ S + GFS+ S V + D+GL +LP T AA+KNP +KIVYDE+NH+RYPPGDP Sbjct: 12 SVTSNSFSIISGFSSNS-VSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDP 70 Query: 423 SKRAFAYFVLSGG 461 SKRAFAYFVL+GG Sbjct: 71 SKRAFAYFVLTGG 83
>CBIB_SALTY (Q05600) Cobalamin biosynthesis protein cbiB| Length = 319 Score = 31.2 bits (69), Expect = 1.3 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = -3 Query: 151 ARWEDMRR--PATLSIVAVGVAASPRSFALRLSGGSGGRVWWRDRFTETT 8 AR +D+ PA LS + +G+AA RLSG R+ WRDR+ ++ Sbjct: 199 ARMDDVANYLPARLSWLLLGIAAG----LCRLSGWRALRIGWRDRYNHSS 244
>CBIB_SALTI (Q8Z5M7) Cobalamin biosynthesis protein cbiB| Length = 319 Score = 31.2 bits (69), Expect = 1.3 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = -3 Query: 151 ARWEDMRR--PATLSIVAVGVAASPRSFALRLSGGSGGRVWWRDRFTETT 8 AR +D+ PA LS + +G+AA RLSG R+ WRDR+ ++ Sbjct: 199 ARMDDVANYLPARLSWLLLGIAAG----LCRLSGWRALRIGWRDRYNHSS 244
>KCAB1_RAT (P63144) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 401 Score = 31.2 bits (69), Expect = 1.3 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -2 Query: 461 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 291 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 264 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQ 319 Query: 290 SRK 282 K Sbjct: 320 QNK 322
>KCAB1_RABIT (Q9XT31) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 419 Score = 31.2 bits (69), Expect = 1.3 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -2 Query: 461 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 291 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 282 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQ 337 Query: 290 SRK 282 K Sbjct: 338 QNK 340
>KCAB1_MOUSE (P63143) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 401 Score = 31.2 bits (69), Expect = 1.3 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -2 Query: 461 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 291 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 264 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQ 319 Query: 290 SRK 282 K Sbjct: 320 QNK 322
>KCAB1_HUMAN (Q14722) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 419 Score = 31.2 bits (69), Expect = 1.3 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -2 Query: 461 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 291 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 282 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQ 337 Query: 290 SRK 282 K Sbjct: 338 QNK 340
>KCAB1_CHICK (Q9PWR1) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 401 Score = 31.2 bits (69), Expect = 1.3 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -2 Query: 461 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 291 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 264 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRAALKCYQWLKEKIISEEGRKQ 319 Query: 290 SRK 282 K Sbjct: 320 QTK 322
>KCAB1_BOVIN (Q4PJK1) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 401 Score = 31.2 bits (69), Expect = 1.3 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -2 Query: 461 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 291 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 264 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQ 319 Query: 290 SRK 282 K Sbjct: 320 QNK 322
>KCAB1_MUSPU (Q28528) Voltage-gated potassium channel beta-1 subunit (K(+)| channel beta-1 subunit) (Kv-beta-1) Length = 408 Score = 31.2 bits (69), Expect = 1.3 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -2 Query: 461 PTAQHKVGKGTLAGVTRWVPLVVILVVDNFGTGILQSSRS---CWELSQPYILAPRNKRF 291 P HK+G G + W PL ++ +G G+ +SSR+ C++ + I++ ++ Sbjct: 271 PELYHKIGVGAMT----WSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQ 326 Query: 290 SRK 282 K Sbjct: 327 QNK 329
>DPOE_EMENI (O93845) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)| (DNA polymerase II subunit A) Length = 2207 Score = 30.4 bits (67), Expect = 2.3 Identities = 15/64 (23%), Positives = 30/64 (46%) Frame = +3 Query: 213 EDFPWDQNPRFAIESPFYVAARGFSAESLVPRSQDVGLAELPATAAALKNPCAKIVYDEY 392 +D P D +PR I+ +Y+ G + L+ +PA ++NP ++ + E+ Sbjct: 1097 KDDPGDMDPRSVIDWDYYLERLGSVVQKLIT---------IPAALQKIRNPVPRVAHPEW 1147 Query: 393 NHKR 404 +R Sbjct: 1148 LQRR 1151
>FUTSC_DROME (Q9W596) Microtubule-associated protein futsch| Length = 5412 Score = 30.0 bits (66), Expect = 3.0 Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 7/149 (4%) Frame = +3 Query: 9 VVSVNRSRHQTRPPDPPDSRRANERGEAATPTATMLRVA--GRRISSHLAWRPXXXXXXG 182 V V RSR T+PP D + A + ++PT T A + + RP Sbjct: 684 VKPVVRSRIDTKPPKSMDRKLAKRDEKKSSPTTTPAARAPVAQNAKPKVLSRPATKSSPS 743 Query: 183 RTPLVGGLPGEDFPWDQNPRFA--IESPFYVAAR--GFSAESLVPRSQDVGLAELPATAA 350 TP + ++ + A +++ V+ R ++E V + + A AT A Sbjct: 744 STPAKSAKEANNRKVLESKQQAARVQATSTVSRRVTSTASERRVQQQAEAKTAATGATQA 803 Query: 351 ALKNPCAKIVYDEYNHKRYP-PGDPSKRA 434 + P ++ KR P PG P K+A Sbjct: 804 TQRKPISRRPRGVSPSKRAPAPGSPVKQA 832
>MBHL_RHILV (P18636) Uptake hydrogenase large subunit (EC 1.12.99.6)| (Hydrogenlyase) (Membrane-bound hydrogenase large subunit) Length = 596 Score = 29.6 bits (65), Expect = 3.9 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Frame = -2 Query: 410 WVPLVVILVVDNFGTGILQSSRSCWELSQPYI---LAPRNKRFSRKASGSNVEGGFNGEA 240 WV +V L D T L S S W LS P + R K+F + G+ G A Sbjct: 130 WVDVVSALSADPKATSALAQSISDWPLSSPGYFKDIQTRLKKFVESGQLGPFKNGYWGNA 189 Query: 239 RILIPGE 219 +P E Sbjct: 190 SYKLPPE 196
>B2_DAUCA (P37707) B2 protein| Length = 207 Score = 28.9 bits (63), Expect = 6.7 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -3 Query: 409 GYLLWLYSS*TILAQGFFRAAAVAGSSANPTSW 311 G L+LY+ T G F AA+ G++ +PT+W Sbjct: 111 GLPLFLYNYSTHQLHGVFEAASFGGTNIDPTAW 143
>CORA_WHV2 (P06433) Core antigen| Length = 187 Score = 28.9 bits (63), Expect = 6.7 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +1 Query: 28 LATKPDHPIPRTAGERTSEAKRRRLP 105 L+T P+H + R G R S + RRR P Sbjct: 140 LSTLPEHTVIRRGGARASRSPRRRTP 165
>MMPS3_MYCTU (P65378) Putative membrane protein mmpS3| Length = 299 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +2 Query: 26 ISPPNPTTRSPGQPESERARRSGD 97 +S PNP R P +PESE +GD Sbjct: 1 MSGPNPPGREPDEPESEPVSDTGD 24
>MMPS3_MYCBO (P65379) Putative membrane protein mmpS3| Length = 299 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +2 Query: 26 ISPPNPTTRSPGQPESERARRSGD 97 +S PNP R P +PESE +GD Sbjct: 1 MSGPNPPGREPDEPESEPVSDTGD 24
>MBHL_BRAJA (P12636) Uptake hydrogenase large subunit (EC 1.12.99.6)| (Hydrogenlyase) (Membrane-bound hydrogenase large subunit) Length = 596 Score = 28.5 bits (62), Expect = 8.7 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Frame = -2 Query: 410 WVPLVVILVVDNFGTGILQSSRSCWELSQPYI---LAPRNKRFSRKASGSNVEGGFNGEA 240 WV +V L D T L S S W LS P L R K+F + G+ G Sbjct: 130 WVDVVSALSADPRATSTLAQSISNWPLSSPGYFKDLQTRLKKFVESGQLGPFKNGYWGSK 189 Query: 239 RILIPGE 219 +P E Sbjct: 190 AYKLPPE 196 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,529,676 Number of Sequences: 219361 Number of extensions: 1381076 Number of successful extensions: 5526 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5279 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5512 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
