>SOX9_CHICK (P48434) Transcription factor SOX-9|
          Length = 494

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 42  PDRHGATPTTSFYLSPVPGSARVSSGPGRPAGAEWEWMAR 161
           P+ H   P T   ++   G+  +SS    PAGA   WMA+
Sbjct: 302 PNGHPGVPATHGQVTTYSGTYGISSSASSPAGAGHAWMAK 341

>ROBO3_HUMAN (Q96MS0) Roundabout homolog 3 precursor (Roundabout-like protein 3)|
          Length = 1386

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 27   VRACLPDRHGATPTTSFYLSPVPGSARVSSGPGR 128
            +R   P   GA P  S +LSP P  +  SS PGR
Sbjct: 1197 IREARPAGLGAGPAASPHLSPSPAPSTASSAPGR 1230

>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein|
            kinase with no lysine 2) (Protein kinase,
            lysine-deficient 2)
          Length = 2297

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 54   GATPTTSFYLSPVPGSARVSSGPGRPAG 137
            GA P TS    P  G+A  + GPG P G
Sbjct: 1435 GAAPATSTMPEPASGTASQAGGPGTPQG 1462

>WDR24_MOUSE (Q8CFJ9) WD-repeat protein 24|
          Length = 790

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 92  DRGEVKTGGRCGAVPVWEARTHEA 21
           DRG + TGGR   V VW+  TH A
Sbjct: 219 DRGWLATGGRDKMVKVWDMTTHRA 242

>WDR24_HUMAN (Q96S15) WD-repeat protein 24|
          Length = 920

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 92  DRGEVKTGGRCGAVPVWEARTHEA 21
           DRG + TGGR   V VW+  TH A
Sbjct: 349 DRGWLATGGRDKMVKVWDMTTHRA 372

>COX11_PONPY (Q5R7U6) Cytochrome c oxidase assembly protein COX11, mitochondrial|
           precursor
          Length = 277

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 93  GPGRGKNWWSVWRRAGLGGTH 31
           G GRG  W   W+R  LG  H
Sbjct: 45  GAGRGLRWLGTWKRCSLGARH 65

>PRTP_HHV1F (P06490) Processing and transport protein (Infected cell protein|
           18.5) (ICP18.5 protein)
          Length = 780

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 15  RVRLVRACLPD--RHGATPTTSFYLSPVPGSARVSSGPGRPAGA 140
           ++ L+R C P   R  A PT +   S    +A   +GPG PAGA
Sbjct: 28  QIELLRRCDPHIGRGNAPPTEAERASGAGAAASSEAGPGGPAGA 71

>THOC6_BRARE (Q5XJS5) THO complex subunit 6 homolog (WD-repeat protein 58)|
          Length = 323

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 86  GEVKTGGRCGAVPVWEARTH 27
           GE+ +GG  GAV +W++RT+
Sbjct: 165 GEILSGGEDGAVRIWDSRTN 184

>Y1797_COREF (Q8FPI1) Hypothetical RNA methyltransferase CE1797 (EC 2.1.1.-)|
          Length = 421

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 208 DHPLLDPPSELD---RCITLAIHSHSAPAGLPGPELTRAEPGTGER*KLVVGV 59
           D+  L P +EL+   R +T  +      A +P PEL   EP  G R ++ +GV
Sbjct: 96  DYAELSPEAELEIKSRVLTDQLQRIGGLADIPTPELFELEPSQGWRTRVRLGV 148

>ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblastoma-inhibiting|
            gene 1) (Rig-1)
          Length = 1366

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 54   GATPTTSFYLSPVPGSARVSSGPGR 128
            GA P  S++ SP P  +  SS PGR
Sbjct: 1206 GAGPVLSYHASPSPVPSTASSAPGR 1230

>WDR24_XENLA (Q7ZX22) WD-repeat protein 24|
          Length = 780

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 92  DRGEVKTGGRCGAVPVWEARTHEA 21
           DRG + TGGR   V VW+  T+ A
Sbjct: 214 DRGWLATGGRDKMVKVWDMNTNRA 237

>TRF1_SALSA (P80426) Serotransferrin I precursor (Siderophilin I) (STF I)|
          Length = 690

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 92  DRGEVKTGGRCGAVPV 45
           D GEV T G+CG VPV
Sbjct: 394 DGGEVYTAGKCGLVPV 409

>TRF2_SALSA (P80429) Serotransferrin II precursor (Siderophilin II) (STF II)|
          Length = 691

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 92  DRGEVKTGGRCGAVPV 45
           D GEV T G+CG VPV
Sbjct: 394 DGGEVYTAGKCGLVPV 409

>TRFE_ONCKI (P79815) Serotransferrin precursor|
          Length = 687

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 92  DRGEVKTGGRCGAVPVWEARTHEADALLP 6
           D GEV T G+CG VPV   +  E     P
Sbjct: 394 DGGEVFTAGKCGLVPVMVEQYDEVRCSAP 422


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,312,142
Number of Sequences: 219361
Number of extensions: 461849
Number of successful extensions: 2183
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2181
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)