ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast61b08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M62720.1|WHTUCP1A Wheat ubiquitin carrier protein (UBC1) mRNA, complete cds Length = 773 Score = 398 bits (201), Expect = e-108 Identities = 245/256 (95%), Gaps = 3/256 (1%) Strand = Plus / Plus Query: 234 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggaccc 293 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 116 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcggctgcagcaggaccc 175 Query: 294 gcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtcat 353 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 176 gcccgccggcatcagcggcgcgccgcacgacaacaacatcaccctctggaacgccgtcat 235 Query: 354 attcgggcccgatgacacgccgtgggatggaggtacgttcaagctgaccctgncattcac 413 ||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 236 atttgggcctgatgacacgccgtgggatggaggtacgttcaagctgaccctgcaattcac 295 Query: 414 agaagattaccccaac-agccaccaactgttcggtttgtctcaaggatg-ttcaccc-aa 470 |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| || Sbjct: 296 agaagattaccccaacaagccaccaactgttcggtttgtctcaaggatgtttcacccaaa 355 Query: 471 catctatgcagatgga 486 ||| |||||||||||| Sbjct: 356 catttatgcagatgga 371
>gb|BT017249.1| Zea mays clone EL01N0307D01.c mRNA sequence Length = 863 Score = 319 bits (161), Expect = 5e-84 Identities = 238/260 (91%), Gaps = 3/260 (1%) Strand = Plus / Plus Query: 230 cggagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcagg 289 ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 169 cggagatgtcgacgccggcgaggaagcgcctgatgcgggacttcaagcggttgcagcagg 228 Query: 290 acccgcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccg 349 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct: 229 acccgcccgccggcatcagcggcgcgccgcacgacaacaacatcatgctctggaacgccg 288 Query: 350 tcatattcgggcccgatgacacgccgtgggatggaggtacgttcaagctgaccctgncat 409 ||||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||| || Sbjct: 289 tcatattcgggccggatgacacgccgtgggacggaggcacgttcaagctgactctgcaat 348 Query: 410 tcacagaagattaccccaac-agccaccaactgttcggtttgtctcaaggatg-ttcacc 467 | |||||||||||||||||| | || || |||||||||||||| || |||||| |||||| Sbjct: 349 ttacagaagattaccccaacaaacctccgactgttcggtttgtttcgaggatgtttcacc 408 Query: 468 c-aacatctatgcagatgga 486 | ||||| ||||| |||||| Sbjct: 409 caaacatttatgcggatgga 428
>ref|XM_469945.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1025 Score = 307 bits (155), Expect = 2e-80 Identities = 235/258 (91%), Gaps = 3/258 (1%) Strand = Plus / Plus Query: 232 gagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggac 291 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 179 gagatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggac 238 Query: 292 ccgcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtc 351 ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct: 239 ccgcccgccggaatcagcggcgcgccgcacgacaacaacatcatgctctggaacgccgtc 298 Query: 352 atattcgggcccgatgacacgccgtgggatggaggtacgttcaagctgaccctgncattc 411 |||||||| || ||||||||||||||||||||||| |||||||||||||| || ||| Sbjct: 299 atattcggaccggatgacacgccgtgggatggaggcacgttcaagctgacactacaattt 358 Query: 412 acagaagattaccccaac-agccaccaactgttcggtttgtctcaaggatg-ttcaccc- 468 ||||||||||| |||||| | |||||| |||||||||||||||||||||| ||||||| Sbjct: 359 acagaagattatcccaacaaaccaccagttgttcggtttgtctcaaggatgtttcaccca 418 Query: 469 aacatctatgcagatgga 486 || || |||||||||||| Sbjct: 419 aatatttatgcagatgga 436
>dbj|AB079798.1| Oryza sativa (japonica cultivar-group) OsRad6 mRNA for Rad6, complete cds Length = 764 Score = 307 bits (155), Expect = 2e-80 Identities = 235/258 (91%), Gaps = 3/258 (1%) Strand = Plus / Plus Query: 232 gagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggac 291 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 172 gagatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggac 231 Query: 292 ccgcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtc 351 ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct: 232 ccgcccgccggaatcagcggcgcgccgcacgacaacaacatcatgctctggaacgccgtc 291 Query: 352 atattcgggcccgatgacacgccgtgggatggaggtacgttcaagctgaccctgncattc 411 |||||||| || ||||||||||||||||||||||| |||||||||||||| || ||| Sbjct: 292 atattcggaccggatgacacgccgtgggatggaggcacgttcaagctgacactacaattt 351 Query: 412 acagaagattaccccaac-agccaccaactgttcggtttgtctcaaggatg-ttcaccc- 468 ||||||||||| |||||| | |||||| |||||||||||||||||||||| ||||||| Sbjct: 352 acagaagattatcccaacaaaccaccagttgttcggtttgtctcaaggatgtttcaccca 411 Query: 469 aacatctatgcagatgga 486 || || |||||||||||| Sbjct: 412 aatatttatgcagatgga 429
>dbj|AK120251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045G10, full insert sequence Length = 847 Score = 307 bits (155), Expect = 2e-80 Identities = 235/258 (91%), Gaps = 3/258 (1%) Strand = Plus / Plus Query: 232 gagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggac 291 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 179 gagatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggac 238 Query: 292 ccgcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtc 351 ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct: 239 ccgcccgccggaatcagcggcgcgccgcacgacaacaacatcatgctctggaacgccgtc 298 Query: 352 atattcgggcccgatgacacgccgtgggatggaggtacgttcaagctgaccctgncattc 411 |||||||| || ||||||||||||||||||||||| |||||||||||||| || ||| Sbjct: 299 atattcggaccggatgacacgccgtgggatggaggcacgttcaagctgacactacaattt 358 Query: 412 acagaagattaccccaac-agccaccaactgttcggtttgtctcaaggatg-ttcaccc- 468 ||||||||||| |||||| | |||||| |||||||||||||||||||||| ||||||| Sbjct: 359 acagaagattatcccaacaaaccaccagttgttcggtttgtctcaaggatgtttcaccca 418 Query: 469 aacatctatgcagatgga 486 || || |||||||||||| Sbjct: 419 aatatttatgcagatgga 436
>dbj|AK067703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116J09, full insert sequence Length = 882 Score = 307 bits (155), Expect = 2e-80 Identities = 235/258 (91%), Gaps = 3/258 (1%) Strand = Plus / Plus Query: 232 gagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggac 291 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 165 gagatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggac 224 Query: 292 ccgcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtc 351 ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct: 225 ccgcccgccggaatcagcggcgcgccgcacgacaacaacatcatgctctggaacgccgtc 284 Query: 352 atattcgggcccgatgacacgccgtgggatggaggtacgttcaagctgaccctgncattc 411 |||||||| || ||||||||||||||||||||||| |||||||||||||| || ||| Sbjct: 285 atattcggaccggatgacacgccgtgggatggaggcacgttcaagctgacactacaattt 344 Query: 412 acagaagattaccccaac-agccaccaactgttcggtttgtctcaaggatg-ttcaccc- 468 ||||||||||| |||||| | |||||| |||||||||||||||||||||| ||||||| Sbjct: 345 acagaagattatcccaacaaaccaccagttgttcggtttgtctcaaggatgtttcaccca 404 Query: 469 aacatctatgcagatgga 486 || || |||||||||||| Sbjct: 405 aatatttatgcagatgga 422
>gb|AY103578.1| Zea mays PCO136701 mRNA sequence Length = 1179 Score = 289 bits (146), Expect = 4e-75 Identities = 212/233 (90%), Gaps = 1/233 (0%) Strand = Plus / Plus Query: 232 gagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggac 291 |||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||| Sbjct: 340 gagatgtcgacgccggcgaggaagcggctgatgcgggacttcaggcgcctgcagcaggac 399 Query: 292 ccgcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtc 351 ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct: 400 ccgcccgccgggatcagcggcgcgccgcacgacaacaacatcatgctctggaacgccgtc 459 Query: 352 atattcgggcccgatgacacgccgtgggatggaggtacgttcaagctgaccctgncattc 411 ||||||||||| ||||| ||||| ||||| ||||| ||||||||||| ||| || || Sbjct: 460 atattcgggccggatgatacgccttgggacggaggcacgttcaagcttaccttgcagttt 519 Query: 412 acagaagattaccccaac-agccaccaactgttcggtttgtctcaaggatgtt 463 |||||||||||||| ||| ||||||||||||||||||| ||||| |||||||| Sbjct: 520 acagaagattacccaaacaagccaccaactgttcggttcgtctctaggatgtt 572
>gb|BT016345.1| Zea mays clone Contig178 mRNA sequence Length = 965 Score = 281 bits (142), Expect = 1e-72 Identities = 211/233 (90%), Gaps = 1/233 (0%) Strand = Plus / Minus Query: 232 gagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggac 291 ||||||||||||||||| |||| ||| |||||||| ||||||| |||||||||||||||| Sbjct: 817 gagatgtcgacgccggctaggaggcgtctgatgcgggacttcaggcgcctgcagcaggac 758 Query: 292 ccgcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtc 351 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct: 757 ccgcccgccggcatcagcggcgcgccgcacgacaacaacatcatgctctggaacgccgtc 698 Query: 352 atattcgggcccgatgacacgccgtgggatggaggtacgttcaagctgaccctgncattc 411 ||||||||||| ||||| ||||| ||||| ||||| ||||||||||| ||| || || Sbjct: 697 atattcgggccggatgatacgccttgggacggaggcacgttcaagcttaccttgcagttt 638 Query: 412 acagaagattaccccaac-agccaccaactgttcggtttgtctcaaggatgtt 463 |||||||||||||| ||| ||||||||||||||||||| ||||| |||||||| Sbjct: 637 acagaagattacccaaacaagccaccaactgttcggttcgtctctaggatgtt 585
>dbj|AK121382.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H21, full insert sequence Length = 895 Score = 256 bits (129), Expect = 6e-65 Identities = 207/232 (89%), Gaps = 1/232 (0%) Strand = Plus / Plus Query: 234 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggaccc 293 |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 155 gatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggaccc 214 Query: 294 gcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtcat 353 ||||| || ||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct: 215 ccccgcggggatcagcggcgcgccgcacgacaacaacatcatgctctggaacgccgtcat 274 Query: 354 attcgggcccgatgacacgccgtgggatggaggtacgttcaagctgaccctgncattcac 413 |||||||| ||||| ||||||||||| ||||| ||||||||||| ||| || || || Sbjct: 275 cttcgggccggatgatacgccgtgggacggaggcacgttcaagcttaccttgcagtttac 334 Query: 414 agaagattaccccaac-agccaccaactgttcggtttgtctcaaggatgttc 464 ||||||||| |||||| |||| || |||||||||||||| || ||||||||| Sbjct: 335 agaagattatcccaacaagccgccgactgttcggtttgtttctaggatgttc 386
>dbj|AK070524.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055G02, full insert sequence Length = 4109 Score = 256 bits (129), Expect = 6e-65 Identities = 207/232 (89%), Gaps = 1/232 (0%) Strand = Plus / Plus Query: 234 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggaccc 293 |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 111 gatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggaccc 170 Query: 294 gcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtcat 353 ||||| || ||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct: 171 ccccgcggggatcagcggcgcgccgcacgacaacaacatcatgctctggaacgccgtcat 230 Query: 354 attcgggcccgatgacacgccgtgggatggaggtacgttcaagctgaccctgncattcac 413 |||||||| ||||| ||||||||||| ||||| ||||||||||| ||| || || || Sbjct: 231 cttcgggccggatgatacgccgtgggacggaggcacgttcaagcttaccttgcagtttac 290 Query: 414 agaagattaccccaac-agccaccaactgttcggtttgtctcaaggatgttc 464 ||||||||| |||||| |||| || |||||||||||||| || ||||||||| Sbjct: 291 agaagattatcccaacaagccgccgactgttcggtttgtttctaggatgttc 342
>ref|XM_476729.1| Oryza sativa (japonica cultivar-group), mRNA Length = 459 Score = 254 bits (128), Expect = 2e-64 Identities = 206/231 (89%), Gaps = 1/231 (0%) Strand = Plus / Plus Query: 235 atgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggacccg 294 ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 1 atgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggacccc 60 Query: 295 cccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtcata 354 ||||| || ||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct: 61 cccgcggggatcagcggcgcgccgcacgacaacaacatcatgctctggaacgccgtcatc 120 Query: 355 ttcgggcccgatgacacgccgtgggatggaggtacgttcaagctgaccctgncattcaca 414 |||||||| ||||| ||||||||||| ||||| ||||||||||| ||| || || ||| Sbjct: 121 ttcgggccggatgatacgccgtgggacggaggcacgttcaagcttaccttgcagtttaca 180 Query: 415 gaagattaccccaac-agccaccaactgttcggtttgtctcaaggatgttc 464 |||||||| |||||| |||| || |||||||||||||| || ||||||||| Sbjct: 181 gaagattatcccaacaagccgccgactgttcggtttgtttctaggatgttc 231
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 208 bits (105), Expect = 1e-50 Identities = 123/129 (95%) Strand = Plus / Plus Query: 232 gagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggac 291 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 112518 gagatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggac 112577 Query: 292 ccgcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtc 351 ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct: 112578 ccgcccgccggaatcagcggcgcgccgcacgacaacaacatcatgctctggaacgccgtc 112637 Query: 352 atattcggg 360 ||||||||| Sbjct: 112638 atattcggg 112646 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand = Plus / Plus Query: 388 acgttcaagctgaccctgncattcacagaagattaccccaacag-ccaccaactgttcgg 446 |||||||||||||| || ||| ||||||||||| ||||||| |||||| ||||||| Sbjct: 116380 acgttcaagctgacactacaatttacagaagattatcccaacaaaccaccagttgttcgg 116439 Query: 447 tttgtctcaaggatgtt 463 ||||||||||||||||| Sbjct: 116440 tttgtctcaaggatgtt 116456 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 364 gatgacacgccgtgggatggaggt 387 |||||||||||||||||||||||| Sbjct: 112825 gatgacacgccgtgggatggaggt 112848
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 208 bits (105), Expect = 1e-50 Identities = 123/129 (95%) Strand = Plus / Minus Query: 232 gagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggac 291 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 32631389 gagatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggac 32631330 Query: 292 ccgcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtc 351 ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct: 32631329 ccgcccgccggaatcagcggcgcgccgcacgacaacaacatcatgctctggaacgccgtc 32631270 Query: 352 atattcggg 360 ||||||||| Sbjct: 32631269 atattcggg 32631261 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand = Plus / Minus Query: 388 acgttcaagctgaccctgncattcacagaagattaccccaacag-ccaccaactgttcgg 446 |||||||||||||| || ||| ||||||||||| ||||||| |||||| ||||||| Sbjct: 32627527 acgttcaagctgacactacaatttacagaagattatcccaacaaaccaccagttgttcgg 32627468 Query: 447 tttgtctcaaggatgtt 463 ||||||||||||||||| Sbjct: 32627467 tttgtctcaaggatgtt 32627451 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Minus Query: 364 gatgacacgccgtgggatggaggt 387 |||||||||||||||||||||||| Sbjct: 32631082 gatgacacgccgtgggatggaggt 32631059 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 43 gagggacgtcacgctcctcgcg 64 |||||||||||||||||||||| Sbjct: 29228449 gagggacgtcacgctcctcgcg 29228428
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 208 bits (105), Expect = 1e-50 Identities = 123/129 (95%) Strand = Plus / Minus Query: 232 gagatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggac 291 |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| Sbjct: 32721899 gagatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggac 32721840 Query: 292 ccgcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtc 351 ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct: 32721839 ccgcccgccggaatcagcggcgcgccgcacgacaacaacatcatgctctggaacgccgtc 32721780 Query: 352 atattcggg 360 ||||||||| Sbjct: 32721779 atattcggg 32721771 Score = 67.9 bits (34), Expect = 3e-08 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand = Plus / Minus Query: 388 acgttcaagctgaccctgncattcacagaagattaccccaacag-ccaccaactgttcgg 446 |||||||||||||| || ||| ||||||||||| ||||||| |||||| ||||||| Sbjct: 32718037 acgttcaagctgacactacaatttacagaagattatcccaacaaaccaccagttgttcgg 32717978 Query: 447 tttgtctcaaggatgtt 463 ||||||||||||||||| Sbjct: 32717977 tttgtctcaaggatgtt 32717961 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Minus Query: 364 gatgacacgccgtgggatggaggt 387 |||||||||||||||||||||||| Sbjct: 32721592 gatgacacgccgtgggatggaggt 32721569 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 43 gagggacgtcacgctcctcgcg 64 |||||||||||||||||||||| Sbjct: 29319825 gagggacgtcacgctcctcgcg 29319804
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 180 bits (91), Expect = 3e-42 Identities = 118/127 (92%) Strand = Plus / Minus Query: 234 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggaccc 293 |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 3625882 gatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggaccc 3625823 Query: 294 gcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtcat 353 ||||| || ||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct: 3625822 ccccgcggggatcagcggcgcgccgcacgacaacaacatcatgctctggaacgccgtcat 3625763 Query: 354 attcggg 360 |||||| Sbjct: 3625762 cttcggg 3625756 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/78 (84%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 388 acgttcaagctgaccctgncattcacagaagattaccccaaca-gccaccaactgttcgg 446 ||||||||||| ||| || || ||||||||||| ||||||| ||| || ||||||||| Sbjct: 3622867 acgttcaagcttaccttgcagtttacagaagattatcccaacaagccgccgactgttcgg 3622808 Query: 447 tttgtctcaaggatgttc 464 ||||| || ||||||||| Sbjct: 3622807 tttgtttctaggatgttc 3622790
>dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1641_C04 Length = 134367 Score = 180 bits (91), Expect = 3e-42 Identities = 118/127 (92%) Strand = Plus / Minus Query: 234 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggaccc 293 |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 95199 gatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggaccc 95140 Query: 294 gcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtcat 353 ||||| || ||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct: 95139 ccccgcggggatcagcggcgcgccgcacgacaacaacatcatgctctggaacgccgtcat 95080 Query: 354 attcggg 360 |||||| Sbjct: 95079 cttcggg 95073 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/78 (84%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 388 acgttcaagctgaccctgncattcacagaagattaccccaaca-gccaccaactgttcgg 446 ||||||||||| ||| || || ||||||||||| ||||||| ||| || ||||||||| Sbjct: 92184 acgttcaagcttaccttgcagtttacagaagattatcccaacaagccgccgactgttcgg 92125 Query: 447 tttgtctcaaggatgttc 464 ||||| || ||||||||| Sbjct: 92124 tttgtttctaggatgttc 92107
>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0039H02 Length = 169162 Score = 180 bits (91), Expect = 3e-42 Identities = 118/127 (92%) Strand = Plus / Minus Query: 234 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggaccc 293 |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct: 163832 gatgtcgacgccggcgaggaagcggctgatgcgggacttcaagcggctgcagcaggaccc 163773 Query: 294 gcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtcat 353 ||||| || ||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct: 163772 ccccgcggggatcagcggcgcgccgcacgacaacaacatcatgctctggaacgccgtcat 163713 Query: 354 attcggg 360 |||||| Sbjct: 163712 cttcggg 163706 Score = 54.0 bits (27), Expect = 4e-04 Identities = 66/78 (84%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 388 acgttcaagctgaccctgncattcacagaagattaccccaaca-gccaccaactgttcgg 446 ||||||||||| ||| || || ||||||||||| ||||||| ||| || ||||||||| Sbjct: 160817 acgttcaagcttaccttgcagtttacagaagattatcccaacaagccgccgactgttcgg 160758 Query: 447 tttgtctcaaggatgttc 464 ||||| || ||||||||| Sbjct: 160757 tttgtttctaggatgttc 160740
>gb|BT018048.1| Zea mays clone EL01N0531D04.c mRNA sequence Length = 817 Score = 111 bits (56), Expect = 2e-21 Identities = 140/168 (83%) Strand = Plus / Plus Query: 234 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggaccc 293 ||||||||| || ||||||||| | |||||| | || |||||||| || ||||||||| Sbjct: 131 gatgtcgactcctgcgaggaagaggctgatgagggatttcaagcggttgatgcaggaccc 190 Query: 294 gcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtcat 353 || |||||||| || ||||| ||||| || |||||||||| ||| ||||| || ||||| Sbjct: 191 tccggccggcataagtggcgccccgcaggataacaacataatgctgtggaatgctgtcat 250 Query: 354 attcgggcccgatgacacgccgtgggatggaggtacgttcaagctgac 401 ||| || || ||||| || |||||||||||||||||||| |||||||| Sbjct: 251 atttggacctgatgataccccgtgggatggaggtacgtttaagctgac 298
>gb|AY104593.1| Zea mays PCO096181 mRNA sequence Length = 1003 Score = 111 bits (56), Expect = 2e-21 Identities = 140/168 (83%) Strand = Plus / Plus Query: 234 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggaccc 293 ||||||||| || ||||||||| | |||||| | || |||||||| || ||||||||| Sbjct: 217 gatgtcgactcctgcgaggaagaggctgatgagggatttcaagcggttgatgcaggaccc 276 Query: 294 gcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtcat 353 || |||||||| || ||||| ||||| || |||||||||| ||| ||||| || ||||| Sbjct: 277 tccggccggcataagtggcgccccgcaggataacaacataatgctgtggaatgctgtcat 336 Query: 354 attcgggcccgatgacacgccgtgggatggaggtacgttcaagctgac 401 ||| || || ||||| || |||||||||||||||||||| |||||||| Sbjct: 337 atttggacctgatgataccccgtgggatggaggtacgtttaagctgac 384
>emb|AJ234842.1|HVU234842 Hordeum vulgare genomic DNA fragment; clone MWG2217 Length = 402 Score = 103 bits (52), Expect = 5e-19 Identities = 67/72 (93%) Strand = Plus / Plus Query: 289 gacccgcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgcc 348 ||||| |||||||| ||||||||||||||||||||||||||||| | ||||||||||||| Sbjct: 4 gacccacccgccgggatcagcggcgcgccgcacgacaacaacatcatgctctggaacgcc 63 Query: 349 gtcatattcggg 360 ||||| |||||| Sbjct: 64 gtcatcttcggg 75
>emb|AJ843121.1| Plantago major mRNA for Ubiquitin-conjugating enzyme (ubc2 gene) Length = 858 Score = 95.6 bits (48), Expect = 1e-16 Identities = 138/168 (82%) Strand = Plus / Plus Query: 234 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggaccc 293 ||||||||| |||||||||||||| |||||| | ||||||||||| |||||||||| || Sbjct: 140 gatgtcgacaccggcgaggaagcggctgatgagggacttcaagcggttgcagcaggatcc 199 Query: 294 gcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtcat 353 || || || |||||||| || ||| |||| ||||| || | | | |||||||| || || Sbjct: 200 tccggctggaatcagcggtgctccgtacgataacaatattatgatttggaacgctgttat 259 Query: 354 attcgggcccgatgacacgccgtgggatggaggtacgttcaagctgac 401 ||| || || ||||| || || ||||||||||||||||| ||| |||| Sbjct: 260 atttggtccggatgatactccttgggatggaggtacgtttaagttgac 307
>gb|BT013884.1| Lycopersicon esculentum clone 132865R, mRNA sequence Length = 794 Score = 81.8 bits (41), Expect = 2e-12 Identities = 119/144 (82%), Gaps = 1/144 (0%) Strand = Plus / Plus Query: 322 gacaacaacataacgctctggaacgccgtcatattcgggcccgatgacacgccgtgggat 381 |||||||| |||| ||| ||||| || || |||||||| || |||||||| || |||||| Sbjct: 148 gacaacaatataatgctttggaatgctgttatattcggtcctgatgacacaccttgggat 207 Query: 382 ggaggtacgttcaagctgaccctgncattcacagaagattaccccaac-agccaccaact 440 ||||||||||| |||||||| || ||| | || |||||||||||| |||| ||||| Sbjct: 208 ggaggtacgtttaagctgacacttcaattttcggaggattaccccaacaagcctccaacg 267 Query: 441 gttcggtttgtctcaaggatgttc 464 ||||| ||||| || ||||||||| Sbjct: 268 gttcgatttgtatccaggatgttc 291
>gb|AF262934.1|AF262934 Avicennia marina ubiquitin conjugating protein (UBC) mRNA, complete cds Length = 850 Score = 81.8 bits (41), Expect = 2e-12 Identities = 176/220 (80%), Gaps = 1/220 (0%) Strand = Plus / Plus Query: 233 agatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggacc 292 |||||||||| || || |||||| | || ||| | ||||||||| | ||||||| |||| Sbjct: 58 agatgtcgactcccgctaggaagagactcatgagggacttcaagaggttgcagcaagacc 117 Query: 293 cgcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtca 352 | || || ||||| || || || || || ||||| ||||| | ||||||||| || || | Sbjct: 118 cacctgcaggcattagtggggcaccacaagacaataacattatgctctggaatgcagtta 177 Query: 353 tattcgggcccgatgacacgccgtgggatggaggtacgttcaagctgaccctgncattca 412 |||| || || ||||| ||||| |||||||||||||| ||||| |||||||| |||| Sbjct: 178 tatttggtcctgatgatacgccatgggatggaggtacattcaaactgacccttcagttca 237 Query: 413 cagaagattaccccaac-agccaccaactgttcggtttgt 451 |||||||||| || ||| | |||||||| ||||| ||||| Sbjct: 238 cagaagattatccaaacaaaccaccaacagttcgatttgt 277
>ref|NM_202096.1| Arabidopsis thaliana UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin conjugating enzyme/ ubiquitin-like activating enzyme AT1G14400 (UBC1) transcript variant AT1G14400.2 mRNA, complete cds Length = 819 Score = 79.8 bits (40), Expect = 8e-12 Identities = 118/143 (82%), Gaps = 1/143 (0%) Strand = Plus / Plus Query: 322 gacaacaacataacgctctggaacgccgtcatattcgggcccgatgacacgccgtgggat 381 ||||||||||| | ||||||||| || |||||||| ||||| |||||||| || |||||| Sbjct: 180 gacaacaacattatgctctggaatgctgtcatatttgggcctgatgacacaccatgggat 239 Query: 382 ggaggtacgttcaagctgaccctgncattcacagaagattaccccaa-cagccaccaact 440 |||||||| ||||| || | ||| ||| | |||||||| ||||| | |||||||| Sbjct: 240 ggaggtactttcaaactctcactgcagttctctgaagattatcccaataaaccaccaaca 299 Query: 441 gttcggtttgtctcaaggatgtt 463 ||||||||||| ||| ||||||| Sbjct: 300 gttcggtttgtgtcacggatgtt 322
>ref|NM_101307.2| Arabidopsis thaliana UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin conjugating enzyme/ ubiquitin-like activating enzyme AT1G14400 (UBC1) transcript variant AT1G14400.1 mRNA, complete cds Length = 948 Score = 79.8 bits (40), Expect = 8e-12 Identities = 118/143 (82%), Gaps = 1/143 (0%) Strand = Plus / Plus Query: 322 gacaacaacataacgctctggaacgccgtcatattcgggcccgatgacacgccgtgggat 381 ||||||||||| | ||||||||| || |||||||| ||||| |||||||| || |||||| Sbjct: 309 gacaacaacattatgctctggaatgctgtcatatttgggcctgatgacacaccatgggat 368 Query: 382 ggaggtacgttcaagctgaccctgncattcacagaagattaccccaa-cagccaccaact 440 |||||||| ||||| || | ||| ||| | |||||||| ||||| | |||||||| Sbjct: 369 ggaggtactttcaaactctcactgcagttctctgaagattatcccaataaaccaccaaca 428 Query: 441 gttcggtttgtctcaaggatgtt 463 ||||||||||| ||| ||||||| Sbjct: 429 gttcggtttgtgtcacggatgtt 451
>gb|AF332451.1| Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme 1 (At1g14400) mRNA, complete cds Length = 459 Score = 79.8 bits (40), Expect = 8e-12 Identities = 118/143 (82%), Gaps = 1/143 (0%) Strand = Plus / Plus Query: 322 gacaacaacataacgctctggaacgccgtcatattcgggcccgatgacacgccgtgggat 381 ||||||||||| | ||||||||| || |||||||| ||||| |||||||| || |||||| Sbjct: 88 gacaacaacattatgctctggaatgctgtcatatttgggcctgatgacacaccatgggat 147 Query: 382 ggaggtacgttcaagctgaccctgncattcacagaagattaccccaa-cagccaccaact 440 |||||||| ||||| || | ||| ||| | |||||||| ||||| | |||||||| Sbjct: 148 ggaggtactttcaaactctcactgcagttctctgaagattatcccaataaaccaccaaca 207 Query: 441 gttcggtttgtctcaaggatgtt 463 ||||||||||| ||| ||||||| Sbjct: 208 gttcggtttgtgtcacggatgtt 230
>gb|AY091330.1| Arabidopsis thaliana putative ubiquitin-conjugating enzyme 1 (UBC1) (At1g14400) mRNA, complete cds Length = 490 Score = 79.8 bits (40), Expect = 8e-12 Identities = 118/143 (82%), Gaps = 1/143 (0%) Strand = Plus / Plus Query: 322 gacaacaacataacgctctggaacgccgtcatattcgggcccgatgacacgccgtgggat 381 ||||||||||| | ||||||||| || |||||||| ||||| |||||||| || |||||| Sbjct: 88 gacaacaacattatgctctggaatgctgtcatatttgggcctgatgacacaccatgggat 147 Query: 382 ggaggtacgttcaagctgaccctgncattcacagaagattaccccaa-cagccaccaact 440 |||||||| ||||| || | ||| ||| | |||||||| ||||| | |||||||| Sbjct: 148 ggaggtactttcaaactctcactgcagttctctgaagattatcccaataaaccaccaaca 207 Query: 441 gttcggtttgtctcaaggatgtt 463 ||||||||||| ||| ||||||| Sbjct: 208 gttcggtttgtgtcacggatgtt 230
>gb|AY070074.1| Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme UBC1 (At1g14400) mRNA, complete cds Length = 839 Score = 79.8 bits (40), Expect = 8e-12 Identities = 118/143 (82%), Gaps = 1/143 (0%) Strand = Plus / Plus Query: 322 gacaacaacataacgctctggaacgccgtcatattcgggcccgatgacacgccgtgggat 381 ||||||||||| | ||||||||| || |||||||| ||||| |||||||| || |||||| Sbjct: 261 gacaacaacattatgctctggaatgctgtcatatttgggcctgatgacacaccatgggat 320 Query: 382 ggaggtacgttcaagctgaccctgncattcacagaagattaccccaa-cagccaccaact 440 |||||||| ||||| || | ||| ||| | |||||||| ||||| | |||||||| Sbjct: 321 ggaggtactttcaaactctcactgcagttctctgaagattatcccaataaaccaccaaca 380 Query: 441 gttcggtttgtctcaaggatgtt 463 ||||||||||| ||| ||||||| Sbjct: 381 gttcggtttgtgtcacggatgtt 403
>emb|BX817066.1|CNS0AD3L Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH83ZF07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 817 Score = 79.8 bits (40), Expect = 8e-12 Identities = 118/143 (82%), Gaps = 1/143 (0%) Strand = Plus / Plus Query: 322 gacaacaacataacgctctggaacgccgtcatattcgggcccgatgacacgccgtgggat 381 ||||||||||| | ||||||||| || |||||||| ||||| |||||||| || |||||| Sbjct: 281 gacaacaacattatgctctggaatgctgtcatatttgggcctgatgacacaccatgggat 340 Query: 382 ggaggtacgttcaagctgaccctgncattcacagaagattaccccaa-cagccaccaact 440 |||||||| ||||| || | ||| ||| | |||||||| ||||| | |||||||| Sbjct: 341 ggaggtactttcaaactctcactgcagttctctgaagattatcccaataaaccaccaaca 400 Query: 441 gttcggtttgtctcaaggatgtt 463 ||||||||||| ||| ||||||| Sbjct: 401 gttcggtttgtgtcacggatgtt 423
>emb|BX816760.1|CNS0AD3H Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH67ZB10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 847 Score = 79.8 bits (40), Expect = 8e-12 Identities = 118/143 (82%), Gaps = 1/143 (0%) Strand = Plus / Plus Query: 322 gacaacaacataacgctctggaacgccgtcatattcgggcccgatgacacgccgtgggat 381 ||||||||||| | ||||||||| || |||||||| ||||| |||||||| || |||||| Sbjct: 234 gacaacaacattatgctctggaatgctgtcatatttgggcctgatgacacaccatgggat 293 Query: 382 ggaggtacgttcaagctgaccctgncattcacagaagattaccccaa-cagccaccaact 440 |||||||| ||||| || | ||| ||| | |||||||| ||||| | |||||||| Sbjct: 294 ggaggtactttcaaactctcactgcagttctctgaagattatcccaataaaccaccaaca 353 Query: 441 gttcggtttgtctcaaggatgtt 463 ||||||||||| ||| ||||||| Sbjct: 354 gttcggtttgtgtcacggatgtt 376
>gb|AY085783.1| Arabidopsis thaliana clone 18146 mRNA, complete sequence Length = 838 Score = 79.8 bits (40), Expect = 8e-12 Identities = 118/143 (82%), Gaps = 1/143 (0%) Strand = Plus / Plus Query: 322 gacaacaacataacgctctggaacgccgtcatattcgggcccgatgacacgccgtgggat 381 ||||||||||| | ||||||||| || |||||||| ||||| |||||||| || |||||| Sbjct: 309 gacaacaacattatgctctggaatgctgtcatatttgggcctgatgacacaccatgggat 368 Query: 382 ggaggtacgttcaagctgaccctgncattcacagaagattaccccaa-cagccaccaact 440 |||||||| ||||| || | ||| ||| | |||||||| ||||| | |||||||| Sbjct: 369 ggaggtactttcaaactctcactgcagttctctgaagattatcccaataaaccaccaaca 428 Query: 441 gttcggtttgtctcaaggatgtt 463 ||||||||||| ||| ||||||| Sbjct: 429 gttcggtttgtgtcacggatgtt 451
>gb|DQ027016.1| Arabidopsis thaliana ubiquitinating enzyme (At1g14400) mRNA, complete cds Length = 459 Score = 79.8 bits (40), Expect = 8e-12 Identities = 118/143 (82%), Gaps = 1/143 (0%) Strand = Plus / Plus Query: 322 gacaacaacataacgctctggaacgccgtcatattcgggcccgatgacacgccgtgggat 381 ||||||||||| | ||||||||| || |||||||| ||||| |||||||| || |||||| Sbjct: 88 gacaacaacattatgctctggaatgctgtcatatttgggcctgatgacacaccatgggat 147 Query: 382 ggaggtacgttcaagctgaccctgncattcacagaagattaccccaa-cagccaccaact 440 |||||||| ||||| || | ||| ||| | |||||||| ||||| | |||||||| Sbjct: 148 ggaggtactttcaaactctcactgcagttctctgaagattatcccaataaaccaccaaca 207 Query: 441 gttcggtttgtctcaaggatgtt 463 ||||||||||| ||| ||||||| Sbjct: 208 gttcggtttgtgtcacggatgtt 230
>gb|M62721.1|ATHUCP1B Arabidopsis thaliana ubiquitin carrier protein (UBC1) mRNA, complete cds Length = 749 Score = 79.8 bits (40), Expect = 8e-12 Identities = 118/143 (82%), Gaps = 1/143 (0%) Strand = Plus / Plus Query: 322 gacaacaacataacgctctggaacgccgtcatattcgggcccgatgacacgccgtgggat 381 ||||||||||| | ||||||||| || |||||||| ||||| |||||||| || |||||| Sbjct: 187 gacaacaacattatgctctggaatgctgtcatatttgggcctgatgacacaccatgggat 246 Query: 382 ggaggtacgttcaagctgaccctgncattcacagaagattaccccaa-cagccaccaact 440 |||||||| ||||| || | ||| ||| | |||||||| ||||| | |||||||| Sbjct: 247 ggaggtactttcaaactctcactgcagttctctgaagattatcccaataaaccaccaaca 306 Query: 441 gttcggtttgtctcaaggatgtt 463 ||||||||||| ||| ||||||| Sbjct: 307 gttcggtttgtgtcacggatgtt 329
>dbj|AB026055.1| Nicotiana tabacum Ntubc1 mRNA for ubiquitin-conjugating enzyme (E2), complete cds Length = 809 Score = 79.8 bits (40), Expect = 8e-12 Identities = 136/168 (80%) Strand = Plus / Plus Query: 234 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggaccc 293 ||||||||| |||||||||||| | |||||| | || || ||||| | |||||||| || Sbjct: 86 gatgtcgacaccggcgaggaagagactgatgagggattttaagcggttacagcaggatcc 145 Query: 294 gcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtcat 353 || ||||||||||| || || || | |||||||| |||| ||| ||||| || ||||| Sbjct: 146 cccggccggcatcagtggagctccatatgacaacaatataatgctatggaatgcagtcat 205 Query: 354 attcgggcccgatgacacgccgtgggatggaggtacgttcaagctgac 401 ||||| || ||||| || || |||||||||||||| || |||||||| Sbjct: 206 tttcggccctgatgatactccttgggatggaggtacatttaagctgac 253
>gb|AY389584.1| Hyacinthus orientalis ubiquitin-conjugating enzyme (UBC) mRNA, partial cds Length = 691 Score = 71.9 bits (36), Expect = 2e-09 Identities = 117/143 (81%), Gaps = 1/143 (0%) Strand = Plus / Plus Query: 322 gacaacaacataacgctctggaacgccgtcatattcgggcccgatgacacgccgtgggat 381 ||||||||||| | |||||||||||| || || || ||||| ||||| || || |||||| Sbjct: 78 gacaacaacatcatgctctggaacgcagtgatctttgggcctgatgatactccatgggat 137 Query: 382 ggaggtacgttcaagctgaccctgncattcacagaagattaccccaa-cagccaccaact 440 |||||||| || || |||| || |||||| || ||||| || || |||||||||| Sbjct: 138 ggaggtacctttaaattgacattgcaattcaccgaggattatcctaataagccaccaaca 197 Query: 441 gttcggtttgtctcaaggatgtt 463 ||||||||||||||||| ||||| Sbjct: 198 gttcggtttgtctcaagaatgtt 220
>emb|BX814055.1|CNS0ADOD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB54ZE09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 804 Score = 71.9 bits (36), Expect = 2e-09 Identities = 117/143 (81%), Gaps = 1/143 (0%) Strand = Plus / Plus Query: 322 gacaacaacataacgctctggaacgccgtcatattcgggcccgatgacacgccgtgggat 381 ||||||||||| | ||||||||| || ||||||| ||||| |||||||| || |||||| Sbjct: 239 gacaacaacattatgctctggaatgctctcatatttgggcctgatgacacaccatgggat 298 Query: 382 ggaggtacgttcaagctgaccctgncattcacagaagattaccccaa-cagccaccaact 440 |||||||| ||||| || | ||| ||| | |||||||| ||||| | |||||||| Sbjct: 299 ggaggtactttcaaactctcactgcagttctctgaagattatcccaataaaccaccaaca 358 Query: 441 gttcggtttgtctcaaggatgtt 463 ||||||||||| ||| ||||||| Sbjct: 359 gttcggtttgtgtcacggatgtt 381
>dbj|AB026056.1| Nicotiana tabacum Ntubc2 mRNA for ubiquitin-conjugating enzyme (E2), complete cds Length = 784 Score = 71.9 bits (36), Expect = 2e-09 Identities = 135/168 (80%) Strand = Plus / Plus Query: 234 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggaccc 293 ||||||||| |||||||||||| | ||| || | || || ||||| | |||||||| || Sbjct: 84 gatgtcgacaccggcgaggaagagactggtgagggattttaagcggttacagcaggatcc 143 Query: 294 gcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtcat 353 || ||||||||||| || || ||| | |||||||| |||| ||| ||||| || ||||| Sbjct: 144 cccggccggcatcagtggagctccgtatgacaacaatataatgctatggaatgcagtcat 203 Query: 354 attcgggcccgatgacacgccgtgggatggaggtacgttcaagctgac 401 ||||| || ||||| || || ||||||||||| || || |||||||| Sbjct: 204 tttcggtcctgatgatactccctgggatggaggcacatttaagctgac 251
>gb|DQ191625.1| Solanum tuberosum unknown mRNA Length = 791 Score = 65.9 bits (33), Expect = 1e-07 Identities = 99/121 (81%) Strand = Plus / Plus Query: 281 tgcagcaggacccgcccgccggcatcagcggcgcgccgcacgacaacaacataacgctct 340 ||||||||||||| || || || || || || || || || ||||||||||| | ||| | Sbjct: 116 tgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgcttt 175 Query: 341 ggaacgccgtcatattcgggcccgatgacacgccgtgggatggaggtacgttcaagctga 400 |||| ||||| ||||| || || |||||||| || |||||||| |||||||||||| ||| Sbjct: 176 ggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttga 235 Query: 401 c 401 | Sbjct: 236 c 236
>gb|DQ294271.1| Solanum tuberosum clone 147C03 ubiquitin carrier-like protein mRNA, complete cds Length = 788 Score = 65.9 bits (33), Expect = 1e-07 Identities = 99/121 (81%) Strand = Plus / Plus Query: 281 tgcagcaggacccgcccgccggcatcagcggcgcgccgcacgacaacaacataacgctct 340 ||||||||||||| || || || || || || || || || ||||||||||| | ||| | Sbjct: 117 tgcagcaggaccctcctgctggtattagtggtgcacctcaagacaacaacattatgcttt 176 Query: 341 ggaacgccgtcatattcgggcccgatgacacgccgtgggatggaggtacgttcaagctga 400 |||| ||||| ||||| || || |||||||| || |||||||| |||||||||||| ||| Sbjct: 177 ggaatgccgtgatatttggtcctgatgacactccttgggatggtggtacgttcaagttga 236 Query: 401 c 401 | Sbjct: 237 c 237
>gb|AY660750.1| Populus tomentosa ubiquitin carrier protein mRNA, complete cds Length = 700 Score = 61.9 bits (31), Expect = 2e-06 Identities = 150/190 (78%) Strand = Plus / Plus Query: 233 agatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggacc 292 ||||||| || ||||| |||||| | ||||| | || |||||| | || |||||||| | Sbjct: 193 agatgtcaaccccggcaaggaagaggttgatgagggatttcaagaggcttcagcaggatc 252 Query: 293 cgcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtca 352 | || || || ||||| || || || || ||||||||||| | |||||||||||| || | Sbjct: 253 cacctgctggtatcagtggagcccctcaagacaacaacatcatgctctggaacgctgtta 312 Query: 353 tattcgggcccgatgacacgccgtgggatggaggtacgttcaagctgaccctgncattca 412 |||| || || ||||| || || ||||||||||| ||||| ||| |||| || ||||| Sbjct: 313 tatttggacctgatgatactccttgggatggagggacgtttaagttgactcttcaattca 372 Query: 413 cagaagatta 422 |||| ||||| Sbjct: 373 cagaggatta 382
>emb|AJ879070.1| Capsicum chinense mRNA for ubiquitin-conjugating enzyme Length = 957 Score = 61.9 bits (31), Expect = 2e-06 Identities = 85/102 (83%), Gaps = 1/102 (0%) Strand = Plus / Plus Query: 364 gatgacacgccgtgggatggaggtacgttcaagctgaccctgncattcacagaagattac 423 ||||||||||| ||||||||||||||||| |||||||| || ||| | || |||||| Sbjct: 344 gatgacacgccttgggatggaggtacgtttaagctgacacttcaattttcggaggattac 403 Query: 424 cccaac-agccaccaactgttcggtttgtctcaaggatgttc 464 |||||| |||| ||||| || |||||| | || ||||||||| Sbjct: 404 cccaacaagcctccaacggtgcggtttatttccaggatgttc 445
>dbj|AK112003.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F01, full insert sequence Length = 947 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 322 gacaacaacataacgctctggaacgccgtcatattcgggcccgatgacacgccgtgggat 381 |||||||| |||| ||| ||||| || || || || || || ||||| || || |||||| Sbjct: 308 gacaacaatataatgctttggaatgctgtaatttttggccctgatgatactccttgggat 367 Query: 382 ggaggtacgttcaagctgac 401 |||||||||||||||||||| Sbjct: 368 ggaggtacgttcaagctgac 387
>dbj|AK111549.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057C14, full insert sequence Length = 2920 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 322 gacaacaacataacgctctggaacgccgtcatattcgggcccgatgacacgccgtgggat 381 |||||||| |||| ||| ||||| || || || || || || ||||| || || |||||| Sbjct: 329 gacaacaatataatgctttggaatgctgtaatttttggccctgatgatactccttgggat 388 Query: 382 ggaggtacgttcaagctgac 401 |||||||||||||||||||| Sbjct: 389 ggaggtacgttcaagctgac 408
>ref|NM_204865.1| Gallus gallus ubiquitin-conjugating enzyme E2A (RAD6 homolog) (UBE2A), mRNA Length = 459 Score = 54.0 bits (27), Expect = 4e-04 Identities = 90/111 (81%) Strand = Plus / Plus Query: 255 gcgcctgatgcgcgacttcaagcgcctgcagcaggacccgcccgccggcatcagcggcgc 314 |||||| ||||| ||||||||| | |||||| ||||||| || ||||| | ||||| || Sbjct: 21 gcgcctcatgcgagacttcaagaggctgcaggaggaccccccggccggggtgagcggggc 80 Query: 315 gccgcacgacaacaacataacgctctggaacgccgtcatattcgggcccga 365 || ||| |||||||| | | | |||||||||||||| ||||||||||| Sbjct: 81 cccctccgagaacaacatcatggtgtggaacgccgtcatcttcgggcccga 131
>gb|AF120212.1|AF120212 Gallus gallus ubiquitin-conjugating enzyme mRNA, complete cds Length = 459 Score = 54.0 bits (27), Expect = 4e-04 Identities = 90/111 (81%) Strand = Plus / Plus Query: 255 gcgcctgatgcgcgacttcaagcgcctgcagcaggacccgcccgccggcatcagcggcgc 314 |||||| ||||| ||||||||| | |||||| ||||||| || ||||| | ||||| || Sbjct: 21 gcgcctcatgcgagacttcaagaggctgcaggaggaccccccggccggggtgagcggggc 80 Query: 315 gccgcacgacaacaacataacgctctggaacgccgtcatattcgggcccga 365 || ||| |||||||| | | | |||||||||||||| ||||||||||| Sbjct: 81 cccctccgagaacaacatcatggtgtggaacgccgtcatcttcgggcccga 131
>ref|NM_126331.2| Arabidopsis thaliana ATUBC2; ubiquitin conjugating enzyme AT2G02760 (ATUBC2) mRNA, complete cds Length = 860 Score = 48.1 bits (24), Expect = 0.027 Identities = 39/44 (88%) Strand = Plus / Plus Query: 352 atattcgggcccgatgacacgccgtgggatggaggtacgttcaa 395 ||||||||||| ||||| || || |||||||||||||| ||||| Sbjct: 297 atattcgggcctgatgataccccttgggatggaggtactttcaa 340
>gb|AY017809.1| Oryza sativa microsatellite MRG0134 containing (AG)X12, closest to marker S11633, genomic sequence Length = 224 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 234 gatgtcgacgccggcgaggaagcg 257 |||||||||||||||||||||||| Sbjct: 197 gatgtcgacgccggcgaggaagcg 220
>gb|DQ200366.1| Solanum tuberosum clone 055E08 ubiquitin-conjugating enzyme-like protein mRNA, complete cds Length = 807 Score = 48.1 bits (24), Expect = 0.027 Identities = 132/168 (78%) Strand = Plus / Plus Query: 234 gatgtcgacgccggcgaggaagcgcctgatgcgcgacttcaagcgcctgcagcaggaccc 293 ||||||||| |||||| |||| | ||||| | || |||||||| | |||||||| || Sbjct: 75 gatgtcgacagcggcgaagaagagattgatgagggatttcaagcggttacagcaggatcc 134 Query: 294 gcccgccggcatcagcggcgcgccgcacgacaacaacataacgctctggaacgccgtcat 353 || || ||||||||||| || || || |||| ||| |||| | | ||||| || || || Sbjct: 135 tcctgctggcatcagcggtgcacctcatgacagcaatataatgttatggaatgctgttat 194 Query: 354 attcgggcccgatgacacgccgtgggatggaggtacgttcaagctgac 401 |||||| || ||||| || | ||||||||||||||||| ||| |||| Sbjct: 195 attcggtcctgatgatactgcctgggatggaggtacgtttaagatgac 242
>emb|Y13031.1|ATUBC2 A.thaliana mRNA for ubiquitin conjugating enzyme UBC2 Length = 824 Score = 48.1 bits (24), Expect = 0.027 Identities = 39/44 (88%) Strand = Plus / Plus Query: 352 atattcgggcccgatgacacgccgtgggatggaggtacgttcaa 395 ||||||||||| ||||| || || |||||||||||||| ||||| Sbjct: 243 atattcgggcctgatgataccccttgggatggaggtactttcaa 286
>gb|AY072479.1| Arabidopsis thaliana putative ubiquitin-conjugating enzyme E2 (At2g02760; T20F6.10) mRNA, complete cds Length = 538 Score = 48.1 bits (24), Expect = 0.027 Identities = 39/44 (88%) Strand = Plus / Plus Query: 352 atattcgggcccgatgacacgccgtgggatggaggtacgttcaa 395 ||||||||||| ||||| || || |||||||||||||| ||||| Sbjct: 118 atattcgggcctgatgataccccttgggatggaggtactttcaa 161
>gb|AF370558.1|AF370558 Arabidopsis thaliana putative ubiquitin-conjugating enzyme E2 (At2g02760; T20F6.10) mRNA, complete cds Length = 830 Score = 48.1 bits (24), Expect = 0.027 Identities = 39/44 (88%) Strand = Plus / Plus Query: 352 atattcgggcccgatgacacgccgtgggatggaggtacgttcaa 395 ||||||||||| ||||| || || |||||||||||||| ||||| Sbjct: 267 atattcgggcctgatgataccccttgggatggaggtactttcaa 310
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 234 gatgtcgacgccggcgaggaagcg 257 |||||||||||||||||||||||| Sbjct: 6621538 gatgtcgacgccggcgaggaagcg 6621561
>dbj|AP002094.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0483F08 Length = 148985 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 234 gatgtcgacgccggcgaggaagcg 257 |||||||||||||||||||||||| Sbjct: 101709 gatgtcgacgccggcgaggaagcg 101732
>gb|DQ027017.1| Arabidopsis thaliana ubiquitinating enzyme (At2g02760) mRNA, complete cds Length = 459 Score = 48.1 bits (24), Expect = 0.027 Identities = 39/44 (88%) Strand = Plus / Plus Query: 352 atattcgggcccgatgacacgccgtgggatggaggtacgttcaa 395 ||||||||||| ||||| || || |||||||||||||| ||||| Sbjct: 118 atattcgggcctgatgataccccttgggatggaggtactttcaa 161
>gb|CP000106.1| Nitrosospira multiformis ATCC 25196 plasmid 3, complete sequence Length = 14159 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 198 gggatcgggaggagcggggccaggcgg 224 ||||||||||||||||| ||||||||| Sbjct: 7272 gggatcgggaggagcggagccaggcgg 7298
>gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genomic sequence, complete sequence Length = 129440 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 43 gagggacgtcacgctcctcgcg 64 |||||||||||||||||||||| Sbjct: 60264 gagggacgtcacgctcctcgcg 60243
>gb|AC113970.8| Mus musculus chromosome 1, clone RP23-125E16, complete sequence Length = 235703 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 26 gagggacggagggaggggaggg 47 |||||||||||||||||||||| Sbjct: 193126 gagggacggagggaggggaggg 193105
>gb|AC145380.3| Oryza sativa chromosome 3 BAC OSJNBa0013A09 genomic sequence, complete sequence Length = 139788 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 43 gagggacgtcacgctcctcgcg 64 |||||||||||||||||||||| Sbjct: 127551 gagggacgtcacgctcctcgcg 127572
>gb|AC123946.4| Mus musculus BAC clone RP23-97L17 from chromosome 12, complete sequence Length = 193610 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 26 gagggacggagggaggggaggg 47 |||||||||||||||||||||| Sbjct: 39909 gagggacggagggaggggaggg 39930
>gb|AC093318.52| Mus musculus strain C57BL/6J clone rp23-252h7 map 1, complete sequence Length = 198381 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 26 gagggacggagggaggggaggg 47 |||||||||||||||||||||| Sbjct: 189874 gagggacggagggaggggaggg 189895
>emb|AL805962.5| Mouse DNA sequence from clone RP23-121I18 on chromosome X, complete sequence Length = 55400 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 28 gggacggagggaggggagggac 49 |||||||||||||||||||||| Sbjct: 890 gggacggagggaggggagggac 869
>emb|AL672293.14| Mouse DNA sequence from clone RP23-180D16 on chromosome X, complete sequence Length = 177087 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 28 gggacggagggaggggagggac 49 |||||||||||||||||||||| Sbjct: 175977 gggacggagggaggggagggac 175956
>gb|DQ214532.1| Taeniopygia guttata clone 0058P0018C03 ubiquitin-conjugating enzyme E2B (RAD6-like) variant 1-like mRNA, complete sequence Length = 937 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 cgcctgatgcgcgacttcaag 276 ||||||||||||||||||||| Sbjct: 47 cgcctgatgcgcgacttcaag 67
>ref|XM_513169.1| PREDICTED: Pan troglodytes similar to family with sequence similarity 43, member B (LOC456591), mRNA Length = 1190 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 266 gcgacttcaagcgcctgcagc 286 ||||||||||||||||||||| Sbjct: 608 gcgacttcaagcgcctgcagc 628
>gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692D12, complete sequence Length = 164064 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 225 gggctcggagatgtcgacgccggcgagga 253 ||||||||||| |||||||||| |||||| Sbjct: 80701 gggctcggagacgtcgacgccgacgagga 80673
>gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0530H10, complete sequence Length = 148373 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 225 gggctcggagatgtcgacgccggcgagga 253 ||||||||||| |||||||||| |||||| Sbjct: 129933 gggctcggagacgtcgacgccgacgagga 129905
>gb|AC134595.3| Mus musculus BAC clone RP23-388E14 from chromosome 15, complete sequence Length = 189263 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 gagggacggagggaggggagg 46 ||||||||||||||||||||| Sbjct: 18041 gagggacggagggaggggagg 18061
>ref|NM_207334.1| Homo sapiens family with sequence similarity 43, member B (FAM43B), mRNA Length = 2569 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 266 gcgacttcaagcgcctgcagc 286 ||||||||||||||||||||| Sbjct: 1143 gcgacttcaagcgcctgcagc 1163
>gb|AC073846.6| Homo sapiens BAC clone RP11-622P13 from 7, complete sequence Length = 123004 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 agggacggagggaggggaggg 47 ||||||||||||||||||||| Sbjct: 106686 agggacggagggaggggaggg 106706
>ref|XM_752262.1| Ustilago maydis 521 hypothetical protein (UM01208.1) partial mRNA Length = 558 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 338 tctggaacgccgtcatattcgggcccgatgacacgcc 374 |||||||||||||||| ||||| |||| |||||||| Sbjct: 104 tctggaacgccgtcatcttcggtcccgcagacacgcc 140
>emb|AL391357.20| Human DNA sequence from clone RP11-401M16 on chromosome 1 Contains the gene for calcium/calmodulin-dependent protein kinase II (CaMKIINalpha), the gene for a novel protein (FLJ12875), a ribosomal protein S4 X-linked (RPS4X) pseudogene, the CDA gene for cytidine deaminase, the PINK1 gene for PTEN induced putative kinase 1, a novel gene (FLJ00387), the DDOST gene for dolichyl-diphosphooligosaccharide-protein glycosyltransferase and the 3' end of the KIF17 gene for kinesin family member 17, complete sequence Length = 195076 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 266 gcgacttcaagcgcctgcagc 286 ||||||||||||||||||||| Sbjct: 75388 gcgacttcaagcgcctgcagc 75408
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 231 ggagatgtcgacgccggcgaggaag 255 |||||||||| |||||||||||||| Sbjct: 9239 ggagatgtcgtcgccggcgaggaag 9263
>gb|AC106857.8| Homo sapiens chromosome 8, clone RP11-262O21, complete sequence Length = 159454 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 gagggacggagggaggggagg 46 ||||||||||||||||||||| Sbjct: 119556 gagggacggagggaggggagg 119576 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 gagggacggagggaggggagg 46 ||||||||||||||||||||| Sbjct: 119532 gagggacggagggaggggagg 119552
>gb|AC022666.14| Homo sapiens, clone RP11-30K7, complete sequence Length = 150721 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 gagggacggagggaggggagg 46 ||||||||||||||||||||| Sbjct: 25523 gagggacggagggaggggagg 25503 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 gagggacggagggaggggagg 46 ||||||||||||||||||||| Sbjct: 25499 gagggacggagggaggggagg 25479
>dbj|AK126900.1| Homo sapiens cDNA FLJ44952 fis, clone BRAWH2004078 Length = 2569 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 266 gcgacttcaagcgcctgcagc 286 ||||||||||||||||||||| Sbjct: 1143 gcgacttcaagcgcctgcagc 1163
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 cagcaggacccgcccgccggc 303 ||||||||||||||||||||| Sbjct: 3755771 cagcaggacccgcccgccggc 3755791
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 225 gggctcggagatgtcgacgccggcgagga 253 ||||||||||| |||||||||| |||||| Sbjct: 17136566 gggctcggagacgtcgacgccgacgagga 17136538
>dbj|AB046016.1| Macaca fascicularis brain cDNA, clone:QccE-15449, similar to human family with sequence similarity 43 member B (FAM43B), mRNA, NM_207334 Length = 2033 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 266 gcgacttcaagcgcctgcagc 286 ||||||||||||||||||||| Sbjct: 588 gcgacttcaagcgcctgcagc 608
>gb|AC157478.3| Mus musculus BAC clone RP23-33K19 from chromosome 15, complete sequence Length = 229783 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 gagggacggagggaggggagg 46 ||||||||||||||||||||| Sbjct: 21639 gagggacggagggaggggagg 21619
>gb|AC113291.16| Mus musculus chromosome 9, clone RP23-417K23, complete sequence Length = 200428 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gagggacggagggaggggag 45 |||||||||||||||||||| Sbjct: 45060 gagggacggagggaggggag 45041
>ref|XM_365949.1| Magnaporthe grisea 70-15 hypothetical protein (MG10169.4) partial mRNA Length = 2166 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gacccgcccgccggcatcag 308 |||||||||||||||||||| Sbjct: 424 gacccgcccgccggcatcag 443
>ref|XM_599043.2| PREDICTED: Bos taurus similar to CG8312-PA, isoform A (LOC520793), mRNA Length = 972 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 cgacttcaagcgcctgcagc 286 |||||||||||||||||||| Sbjct: 609 cgacttcaagcgcctgcagc 628
>gb|AC123610.10| Mus musculus chromosome 9, clone RP23-343M15, complete sequence Length = 206563 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gagggacggagggaggggag 45 |||||||||||||||||||| Sbjct: 206003 gagggacggagggaggggag 205984
>gb|AC114539.8| Mus musculus chromosome 19, clone RP23-62I23, complete sequence Length = 249767 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 ttcacccaacatctatgcagatgg 485 |||||||| ||||||||||||||| Sbjct: 105954 ttcacccatcatctatgcagatgg 105931
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 300 cggcatcagcggcgcgccgcacga 323 ||||||||||||||||| |||||| Sbjct: 305896 cggcatcagcggcgcgctgcacga 305919
>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14 Length = 346301 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 300 cggcatcagcggcgcgccgcacga 323 ||||||||||||||||| |||||| Sbjct: 30889 cggcatcagcggcgcgctgcacga 30912
>emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A11, complete sequence Length = 127419 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 gagggacggagggaggggag 45 |||||||||||||||||||| Sbjct: 111645 gagggacggagggaggggag 111664
>emb|AL590864.12| Mouse DNA sequence from clone RP23-96E5 on chromosome 13 contains two novel genes, ribosomal protein L17 (Rpl17), S19 (Rps19) and L27A (Rpl27a) pseudogenes and a CpG island, complete sequence Length = 196857 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 gagggacggagggaggggagggac 49 |||||| ||||||||||||||||| Sbjct: 95357 gagggagggagggaggggagggac 95380
>gb|AE012505.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 413 of 460 of the complete genome Length = 10606 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 gccggcatcagcggcgcgcc 317 |||||||||||||||||||| Sbjct: 6221 gccggcatcagcggcgcgcc 6202
>dbj|AK134110.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830440F21 product:CUE domain containing 2, full insert sequence Length = 2816 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 462 ttcacccaacatctatgcagatgg 485 |||||||| ||||||||||||||| Sbjct: 2251 ttcacccatcatctatgcagatgg 2274
>gb|DQ067902.1| Calonectria ilicicola clone L6 microsatellite sequence Length = 208 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 cgagggacggagggaggggaggga 48 ||||||| |||||||||||||||| Sbjct: 152 cgagggatggagggaggggaggga 129
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 gccggcatcagcggcgcgcc 317 |||||||||||||||||||| Sbjct: 4641768 gccggcatcagcggcgcgcc 4641749
>gb|AC068807.21| Mus musculus 11 BAC RP23-346P7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 208135 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 gagggacggagggaggggag 45 |||||||||||||||||||| Sbjct: 197363 gagggacggagggaggggag 197382
>gb|AC039057.8|AC039057 Homo sapiens chromosome 15 clone RP11-81G24 map 15q21.3, complete sequence Length = 174672 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 aggcggcggccgctccggga 193 |||||||||||||||||||| Sbjct: 127547 aggcggcggccgctccggga 127566
>ref|XM_395927.2| PREDICTED: Apis mellifera similar to CG17342-PA, isoform A (LOC412470), mRNA Length = 1533 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 caccaactgttcggtttgtc 452 |||||||||||||||||||| Sbjct: 1411 caccaactgttcggtttgtc 1430
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 gagggacggagggaggggag 45 |||||||||||||||||||| Sbjct: 3522350 gagggacggagggaggggag 3522369
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 cggcggccgctccgggagcg 196 |||||||||||||||||||| Sbjct: 4004811 cggcggccgctccgggagcg 4004830
>gb|AC158648.2| Mus musculus 6 BAC RP23-431M16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205189 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 ggacggagggaggggaggga 48 |||||||||||||||||||| Sbjct: 120628 ggacggagggaggggaggga 120647
>gb|AC155836.5| Mus musculus 6 BAC RP24-511F13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 147664 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 ggacggagggaggggaggga 48 |||||||||||||||||||| Sbjct: 33724 ggacggagggaggggaggga 33743
>gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete sequence Length = 111686 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 432 ccaccaactgttcggtttgtctcaaggatgtt 463 |||||||| ||||||||||| ||| ||||||| Sbjct: 58825 ccaccaacagttcggtttgtgtcacggatgtt 58794
>ref|XM_308373.2| Anopheles gambiae str. PEST ENSANGP00000019133 (ENSANGG00000016644), partial mRNA Length = 1266 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 caccaccagcccggggaacc 166 |||||||||||||||||||| Sbjct: 597 caccaccagcccggggaacc 578
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 aacgctctggaacgccgtca 352 |||||||||||||||||||| Sbjct: 1314641 aacgctctggaacgccgtca 1314660
>gb|AF007117.1|RNGZAL1 Rattus norvegicus guanine nucleotide-binding protein (Gz-alpha) gene, 5' flanking sequence Length = 3486 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 acgagggacggagggagggg 43 |||||||||||||||||||| Sbjct: 332 acgagggacggagggagggg 313
>gb|AC107780.12| Mus musculus chromosome 8, clone RP23-61O10, complete sequence Length = 244047 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 agggacggagggaggggagg 46 |||||||||||||||||||| Sbjct: 147623 agggacggagggaggggagg 147604
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 ccgccggcatcagcggcgcgccgc 319 |||||||||||||||||| ||||| Sbjct: 3809069 ccgccggcatcagcggcgagccgc 3809092
>dbj|AP004625.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT14E05b, TM0089b, complete sequence Length = 126514 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 tgtcgacgccggcgaggaag 255 |||||||||||||||||||| Sbjct: 100824 tgtcgacgccggcgaggaag 100843
>emb|AL591436.8| Mouse DNA sequence from clone RP23-434F13 on chromosome 11, complete sequence Length = 187006 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gagggacggagggaggggag 45 |||||||||||||||||||| Sbjct: 60415 gagggacggagggaggggag 60396
>gb|L19351.1|ATHUBIQUA Arabidopsis thaliana 16kDa ubiquitin conjugating enzyme (UBC1) gene, complete cds Length = 1887 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 432 ccaccaactgttcggtttgtctcaaggatgtt 463 |||||||| ||||||||||| ||| ||||||| Sbjct: 1257 ccaccaacagttcggtttgtgtcacggatgtt 1288 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,680,889 Number of Sequences: 3902068 Number of extensions: 2680889 Number of successful extensions: 68561 Number of sequences better than 10.0: 109 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67392 Number of HSP's gapped (non-prelim): 1149 length of query: 488 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 466 effective length of database: 17,147,199,772 effective search space: 7990595093752 effective search space used: 7990595093752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
