ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast61b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB028870.1| Hordeum vulgare Hv-MMT1 mRNA for S-adenosyl-L-me... 940 0.0
2ref|XM_475069.1| Oryza sativa (japonica cultivar-group), predic... 490 e-135
3dbj|AK121285.1| Oryza sativa (japonica cultivar-group) cDNA clon... 490 e-135
4gb|AC104285.2| Oryza sativa (japonica cultivar-group) chromosome... 383 e-103
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 383 e-103
6gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome... 383 e-103
7gb|AF144079.1|AF144079 Zea mays S-adenosyl-L-methionine:L-methio... 323 3e-85
8gb|AY109558.1| Zea mays CL1511_1 mRNA sequence 202 8e-49
9emb|AJ578659.1|EGU578659 Elaeis guineensis microsatellite DNA, c... 46 0.11
10gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold 44 0.44
11gb|AC121066.3| Oryctolagus cuniculus strain New Zealand White cl... 44 0.44
12gb|BC056489.1| Mus musculus nucleoporin 188, mRNA (cDNA clone IM... 42 1.7
13gb|AE014175.1| Mus musculus piebald deletion region section 3 of... 42 1.7
14dbj|AK129073.1| Mus musculus mRNA for mKIAA0169 protein 42 1.7
15gb|BC032090.1| Mus musculus cDNA clone IMAGE:3598686 42 1.7
16gb|BC096591.1| Mus musculus nucleoporin 188, mRNA (cDNA clone MG... 42 1.7
17ref|NM_198304.2| Mus musculus nucleoporin 188 (Nup188), mRNA 42 1.7
18emb|AL954388.5| Mouse DNA sequence from clone RP23-395P6 on chro... 42 1.7
19ref|NM_124359.2| Arabidopsis thaliana MMT; S-adenosylmethionine-... 40 6.8
20gb|AC165426.3| Mus musculus BAC clone RP23-157G2 from chromosome... 40 6.8
21gb|AC123049.4| Mus musculus BAC clone RP24-360B3 from chromosome... 40 6.8
22gb|AC122840.3| Mus musculus BAC clone RP23-193M8 from 13, comple... 40 6.8
23ref|NM_001030982.1| Gallus gallus Rap guanine nucleotide exchang... 40 6.8
24gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 6.8
25emb|AL157833.14| Human DNA sequence from clone RP11-205K10 on ch... 40 6.8
26emb|AJ851807.1| Gallus gallus mRNA for hypothetical protein, clo... 40 6.8
27emb|CR937046.1|PT147K15 Pan troglodytes chromosome 11 BAC PTB-14... 40 6.8
28gb|AY094459.1| Arabidopsis thaliana AT5g49810/K21G20_2 mRNA, com... 40 6.8
29emb|BX649487.7| Zebrafish DNA sequence from clone DKEY-148C4 in ... 40 6.8
30gb|AF137380.1|AF137380 Arabidopsis thaliana methionine S-methylt... 40 6.8
31gb|AC093725.3| Homo sapiens BAC clone RP11-4O3 from 4, complete ... 40 6.8
32emb|BX832659.1|CNS09ZRH Arabidopsis thaliana Full-length cDNA Co... 40 6.8
33gb|AC138059.3| Homo sapiens chromosome 3 clone RP11-195M4, compl... 40 6.8
34gb|AC137673.2| Homo sapiens chromosome 3 clone CTD-2195M5, compl... 40 6.8
35gb|BT002664.1| Arabidopsis thaliana At5g49810/K21G20_2 gene, com... 40 6.8
36dbj|AB025612.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.8
37emb|AJ331745.1|HSA331745 Homo sapiens genomic sequence surroundi... 40 6.8
38gb|M17169.1|CRUGRP Chinese hamster glucose-regulated protein GRP... 40 6.8

>dbj|AB028870.1| Hordeum vulgare Hv-MMT1 mRNA for S-adenosyl-L-methionine:
            L-methionine S-methyltransferase, complete cds
          Length = 3543

 Score =  940 bits (474), Expect = 0.0
 Identities = 502/506 (99%), Gaps = 4/506 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    cagccagcactattatggttgtcttttccatgagctgctggcatttcaaattggtgaccg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1993 cagccagcactattatggttgtcttttccatgagctgctggcatttcaaattggtgaccg 2052

                                                                        
Query: 61   gcatccacaacaagagagagaacctgcagaagtgatatctaaggagatgatagggttttc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2053 gcatccacaacaagagagagaacctgcagaagtgatatctaaggagatgatagggttttc 2112

                                                                        
Query: 121  aagttcagctatgtccaccctagaaggagctgagtttttcgttcctggttccatggaatc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2113 aagttcagctatgtccaccctagaaggagctgagtttttcgttcctggttccatggaatc 2172

                                                                        
Query: 181  cggtgtcatacatatggatctggaccgcagcttcttgccagtaccttctgcagtaaacgc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2173 cggtgtcatacatatggatctggaccgcagcttcttgccagtaccttctgcagtaaacgc 2232

                                                                        
Query: 241  ctccattttcgaaagttttgttcgtcagaacatcactgattctgaaactgatgtccgttc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2233 ctccattttcgaaagttttgttcgtcagaacatcactgattctgaaactgatgtccgttc 2292

                                                                        
Query: 301  cagcattcagcagctggtgaaagatagctatggtttctcagcaggcggtgcttctgaaat 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2293 cagcattcagcagctggtgaaagatagctatggtttctcagcaggcggtgcttctgaaat 2352

                                                                        
Query: 361  tatatacgggaacacctgtctcgcgctcttcaacaagcttgttctttgctgcatgcaaga 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2353 tatatacgggaacacctgtctcgcgctcttcaacaagcttgttctttgctgcatgcaaga 2412

                                                                        
Query: 421  acagggcaccttgcttttccccttggg-accaacgggcattatgtc-acgcagc-aagtt 477
            ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||
Sbjct: 2413 acagggcaccttgcttttccccttgggaaccaacgggcattatgtcaacgcagcaaagtt 2472

                                      
Query: 478  tgtgaatgc-accaccttgactattc 502
            ||||||||| ||||||||||||||||
Sbjct: 2473 tgtgaatgcaaccaccttgactattc 2498



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>ref|XM_475069.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3255

 Score =  490 bits (247), Expect = e-135
 Identities = 397/447 (88%)
 Strand = Plus / Plus

                                                                        
Query: 1    cagccagcactattatggttgtcttttccatgagctgctggcatttcaaattggtgaccg 60
            |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct: 1896 cagccagcactattatggttgtcttttccatgagctactggcatttcaaattgctgatcg 1955

                                                                        
Query: 61   gcatccacaacaagagagagaacctgcagaagtgatatctaaggagatgatagggttttc 120
            ||||||||||||||| |||   ||||||||||||||| || || |||||||||| |||||
Sbjct: 1956 gcatccacaacaagaaagactgcctgcagaagtgatacctcagaagatgataggattttc 2015

                                                                        
Query: 121  aagttcagctatgtccaccctagaaggagctgagtttttcgttcctggttccatggaatc 180
            ||||||||||||||| |||||| ||| |||||| |||||| ||||||  ||||   ||||
Sbjct: 2016 aagttcagctatgtctaccctaaaagaagctgaatttttcattcctgactccaaaaaatc 2075

                                                                        
Query: 181  cggtgtcatacatatggatctggaccgcagcttcttgccagtaccttctgcagtaaacgc 240
            | ||||||| ||||||||| | || ||||||||||||||||| ||||||||||| || ||
Sbjct: 2076 cagtgtcattcatatggatttagatcgcagcttcttgccagtgccttctgcagtgaatgc 2135

                                                                        
Query: 241  ctccattttcgaaagttttgttcgtcagaacatcactgattctgaaactgatgtccgttc 300
            ||||||||| |||||||||||| | |||||||| ||||| ||||||||||||||||||||
Sbjct: 2136 ctccatttttgaaagttttgttaggcagaacattactgagtctgaaactgatgtccgttc 2195

                                                                        
Query: 301  cagcattcagcagctggtgaaagatagctatggtttctcagcaggcggtgcttctgaaat 360
            ||||||||||||||||||||||||||||||||||||| ||||||  |||  |||||||||
Sbjct: 2196 cagcattcagcagctggtgaaagatagctatggtttcccagcagatggttgttctgaaat 2255

                                                                        
Query: 361  tatatacgggaacacctgtctcgcgctcttcaacaagcttgttctttgctgcatgcaaga 420
              |||| || ||||||||||| || ||||||||||||||||  ||||||||||| |||||
Sbjct: 2256 attatatggcaacacctgtcttgcactcttcaacaagcttgccctttgctgcatccaaga 2315

                                       
Query: 421  acagggcaccttgcttttccccttggg 447
             ||||||||||| ||||||||||||||
Sbjct: 2316 ccagggcaccttacttttccccttggg 2342



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>dbj|AK121285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108O11, full
            insert sequence
          Length = 3542

 Score =  490 bits (247), Expect = e-135
 Identities = 397/447 (88%)
 Strand = Plus / Plus

                                                                        
Query: 1    cagccagcactattatggttgtcttttccatgagctgctggcatttcaaattggtgaccg 60
            |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct: 1974 cagccagcactattatggttgtcttttccatgagctactggcatttcaaattgctgatcg 2033

                                                                        
Query: 61   gcatccacaacaagagagagaacctgcagaagtgatatctaaggagatgatagggttttc 120
            ||||||||||||||| |||   ||||||||||||||| || || |||||||||| |||||
Sbjct: 2034 gcatccacaacaagaaagactgcctgcagaagtgatacctcagaagatgataggattttc 2093

                                                                        
Query: 121  aagttcagctatgtccaccctagaaggagctgagtttttcgttcctggttccatggaatc 180
            ||||||||||||||| |||||| ||| |||||| |||||| ||||||  ||||   ||||
Sbjct: 2094 aagttcagctatgtctaccctaaaagaagctgaatttttcattcctgactccaaaaaatc 2153

                                                                        
Query: 181  cggtgtcatacatatggatctggaccgcagcttcttgccagtaccttctgcagtaaacgc 240
            | ||||||| ||||||||| | || ||||||||||||||||| ||||||||||| || ||
Sbjct: 2154 cagtgtcattcatatggatttagatcgcagcttcttgccagtgccttctgcagtgaatgc 2213

                                                                        
Query: 241  ctccattttcgaaagttttgttcgtcagaacatcactgattctgaaactgatgtccgttc 300
            ||||||||| |||||||||||| | |||||||| ||||| ||||||||||||||||||||
Sbjct: 2214 ctccatttttgaaagttttgttaggcagaacattactgagtctgaaactgatgtccgttc 2273

                                                                        
Query: 301  cagcattcagcagctggtgaaagatagctatggtttctcagcaggcggtgcttctgaaat 360
            ||||||||||||||||||||||||||||||||||||| ||||||  |||  |||||||||
Sbjct: 2274 cagcattcagcagctggtgaaagatagctatggtttcccagcagatggttgttctgaaat 2333

                                                                        
Query: 361  tatatacgggaacacctgtctcgcgctcttcaacaagcttgttctttgctgcatgcaaga 420
              |||| || ||||||||||| || ||||||||||||||||  ||||||||||| |||||
Sbjct: 2334 attatatggcaacacctgtcttgcactcttcaacaagcttgccctttgctgcatccaaga 2393

                                       
Query: 421  acagggcaccttgcttttccccttggg 447
             ||||||||||| ||||||||||||||
Sbjct: 2394 ccagggcaccttacttttccccttggg 2420



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>gb|AC104285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0035J08, complete sequence
          Length = 117555

 Score =  383 bits (193), Expect = e-103
 Identities = 322/365 (88%)
 Strand = Plus / Minus

                                                                         
Query: 83    cctgcagaagtgatatctaaggagatgatagggttttcaagttcagctatgtccacccta 142
             ||||||||||||||| || || |||||||||| |||||||||||||||||||| ||||||
Sbjct: 13974 cctgcagaagtgatacctcagaagatgataggattttcaagttcagctatgtctacccta 13915

                                                                         
Query: 143   gaaggagctgagtttttcgttcctggttccatggaatccggtgtcatacatatggatctg 202
              ||| |||||| |||||| ||||||  ||||   ||||| ||||||| ||||||||| | 
Sbjct: 13914 aaagaagctgaatttttcattcctgactccaaaaaatccagtgtcattcatatggattta 13855

                                                                         
Query: 203   gaccgcagcttcttgccagtaccttctgcagtaaacgcctccattttcgaaagttttgtt 262
             || ||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||
Sbjct: 13854 gatcgcagcttcttgccagtgccttctgcagtgaatgcctccatttttgaaagttttgtt 13795

                                                                         
Query: 263   cgtcagaacatcactgattctgaaactgatgtccgttccagcattcagcagctggtgaaa 322
              | |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13794 aggcagaacattactgagtctgaaactgatgtccgttccagcattcagcagctggtgaaa 13735

                                                                         
Query: 323   gatagctatggtttctcagcaggcggtgcttctgaaattatatacgggaacacctgtctc 382
             ||||||||||||||| ||||||  |||  |||||||||  |||| || ||||||||||| 
Sbjct: 13734 gatagctatggtttcccagcagatggttgttctgaaatattatatggcaacacctgtctt 13675

                                                                         
Query: 383   gcgctcttcaacaagcttgttctttgctgcatgcaagaacagggcaccttgcttttcccc 442
             || ||||||||||||||||  ||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 13674 gcactcttcaacaagcttgccctttgctgcatccaagaccagggcaccttacttttcccc 13615

                  
Query: 443   ttggg 447
             |||||
Sbjct: 13614 ttggg 13610



 Score =  125 bits (63), Expect = 1e-25
 Identities = 72/75 (96%)
 Strand = Plus / Minus

                                                                         
Query: 1     cagccagcactattatggttgtcttttccatgagctgctggcatttcaaattggtgaccg 60
             |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct: 14347 cagccagcactattatggttgtcttttccatgagctactggcatttcaaattgctgatcg 14288

                            
Query: 61    gcatccacaacaaga 75
             |||||||||||||||
Sbjct: 14287 gcatccacaacaaga 14273



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score =  383 bits (193), Expect = e-103
 Identities = 322/365 (88%)
 Strand = Plus / Minus

                                                                          
Query: 83     cctgcagaagtgatatctaaggagatgatagggttttcaagttcagctatgtccacccta 142
              ||||||||||||||| || || |||||||||| |||||||||||||||||||| ||||||
Sbjct: 238454 cctgcagaagtgatacctcagaagatgataggattttcaagttcagctatgtctacccta 238395

                                                                          
Query: 143    gaaggagctgagtttttcgttcctggttccatggaatccggtgtcatacatatggatctg 202
               ||| |||||| |||||| ||||||  ||||   ||||| ||||||| ||||||||| | 
Sbjct: 238394 aaagaagctgaatttttcattcctgactccaaaaaatccagtgtcattcatatggattta 238335

                                                                          
Query: 203    gaccgcagcttcttgccagtaccttctgcagtaaacgcctccattttcgaaagttttgtt 262
              || ||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||
Sbjct: 238334 gatcgcagcttcttgccagtgccttctgcagtgaatgcctccatttttgaaagttttgtt 238275

                                                                          
Query: 263    cgtcagaacatcactgattctgaaactgatgtccgttccagcattcagcagctggtgaaa 322
               | |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238274 aggcagaacattactgagtctgaaactgatgtccgttccagcattcagcagctggtgaaa 238215

                                                                          
Query: 323    gatagctatggtttctcagcaggcggtgcttctgaaattatatacgggaacacctgtctc 382
              ||||||||||||||| ||||||  |||  |||||||||  |||| || ||||||||||| 
Sbjct: 238214 gatagctatggtttcccagcagatggttgttctgaaatattatatggcaacacctgtctt 238155

                                                                          
Query: 383    gcgctcttcaacaagcttgttctttgctgcatgcaagaacagggcaccttgcttttcccc 442
              || ||||||||||||||||  ||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 238154 gcactcttcaacaagcttgccctttgctgcatccaagaccagggcaccttacttttcccc 238095

                   
Query: 443    ttggg 447
              |||||
Sbjct: 238094 ttggg 238090



 Score =  125 bits (63), Expect = 1e-25
 Identities = 72/75 (96%)
 Strand = Plus / Minus

                                                                          
Query: 1      cagccagcactattatggttgtcttttccatgagctgctggcatttcaaattggtgaccg 60
              |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct: 238827 cagccagcactattatggttgtcttttccatgagctactggcatttcaaattgctgatcg 238768

                             
Query: 61     gcatccacaacaaga 75
              |||||||||||||||
Sbjct: 238767 gcatccacaacaaga 238753



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>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12,
              complete sequence
          Length = 160603

 Score =  383 bits (193), Expect = e-103
 Identities = 322/365 (88%)
 Strand = Plus / Minus

                                                                          
Query: 83     cctgcagaagtgatatctaaggagatgatagggttttcaagttcagctatgtccacccta 142
              ||||||||||||||| || || |||||||||| |||||||||||||||||||| ||||||
Sbjct: 120638 cctgcagaagtgatacctcagaagatgataggattttcaagttcagctatgtctacccta 120579

                                                                          
Query: 143    gaaggagctgagtttttcgttcctggttccatggaatccggtgtcatacatatggatctg 202
               ||| |||||| |||||| ||||||  ||||   ||||| ||||||| ||||||||| | 
Sbjct: 120578 aaagaagctgaatttttcattcctgactccaaaaaatccagtgtcattcatatggattta 120519

                                                                          
Query: 203    gaccgcagcttcttgccagtaccttctgcagtaaacgcctccattttcgaaagttttgtt 262
              || ||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||
Sbjct: 120518 gatcgcagcttcttgccagtgccttctgcagtgaatgcctccatttttgaaagttttgtt 120459

                                                                          
Query: 263    cgtcagaacatcactgattctgaaactgatgtccgttccagcattcagcagctggtgaaa 322
               | |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120458 aggcagaacattactgagtctgaaactgatgtccgttccagcattcagcagctggtgaaa 120399

                                                                          
Query: 323    gatagctatggtttctcagcaggcggtgcttctgaaattatatacgggaacacctgtctc 382
              ||||||||||||||| ||||||  |||  |||||||||  |||| || ||||||||||| 
Sbjct: 120398 gatagctatggtttcccagcagatggttgttctgaaatattatatggcaacacctgtctt 120339

                                                                          
Query: 383    gcgctcttcaacaagcttgttctttgctgcatgcaagaacagggcaccttgcttttcccc 442
              || ||||||||||||||||  ||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 120338 gcactcttcaacaagcttgccctttgctgcatccaagaccagggcaccttacttttcccc 120279

                   
Query: 443    ttggg 447
              |||||
Sbjct: 120278 ttggg 120274



 Score =  125 bits (63), Expect = 1e-25
 Identities = 72/75 (96%)
 Strand = Plus / Minus

                                                                          
Query: 1      cagccagcactattatggttgtcttttccatgagctgctggcatttcaaattggtgaccg 60
              |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct: 121011 cagccagcactattatggttgtcttttccatgagctactggcatttcaaattgctgatcg 120952

                             
Query: 61     gcatccacaacaaga 75
              |||||||||||||||
Sbjct: 120951 gcatccacaacaaga 120937



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>gb|AF144079.1|AF144079 Zea mays S-adenosyl-L-methionine:L-methionine S-methyltransferase
            mRNA, complete cds
          Length = 3527

 Score =  323 bits (163), Expect = 3e-85
 Identities = 376/447 (84%)
 Strand = Plus / Plus

                                                                        
Query: 1    cagccagcactattatggttgtcttttccatgagctgctggcatttcaaattggtgaccg 60
            ||||||||||||||||||||| |||||||| ||||| ||||||||||| |||| ||||||
Sbjct: 1929 cagccagcactattatggttgccttttccacgagcttctggcatttcagattgctgaccg 1988

                                                                        
Query: 61   gcatccacaacaagagagagaacctgcagaagtgatatctaaggagatgatagggttttc 120
             |||||||| ||||||||| ||||||| ||||||||| || || |||||||||| |||||
Sbjct: 1989 tcatccacagcaagagagacaacctgcggaagtgatacctcagcagatgataggattttc 2048

                                                                        
Query: 121  aagttcagctatgtccaccctagaaggagctgagtttttcgttcctggttccatggaatc 180
                 ||||| |||| |||||| | |   |||| |||||||||||||||||    |||||
Sbjct: 2049 tgacccagctgtgtctaccctaaaggctactgaatttttcgttcctggttcagctgaatc 2108

                                                                        
Query: 181  cggtgtcatacatatggatctggaccgcagcttcttgccagtaccttctgcagtaaacgc 240
            | |  | || ||||||||| | || ||||||||| ||||||||||||| ||||| || ||
Sbjct: 2109 cagcattattcatatggatttagatcgcagcttcctgccagtaccttcagcagtgaatgc 2168

                                                                        
Query: 241  ctccattttcgaaagttttgttcgtcagaacatcactgattctgaaactgatgtccgttc 300
             ||  |||| |||||||||||  | ||||||||||||||||||||||| |||||||||||
Sbjct: 2169 gtctgtttttgaaagttttgtcaggcagaacatcactgattctgaaaccgatgtccgttc 2228

                                                                        
Query: 301  cagcattcagcagctggtgaaagatagctatggtttctcagcaggcggtgcttctgaaat 360
            |||||| || |||||||||||||| ||||||||||| || ||||  |||  | | |||||
Sbjct: 2229 cagcatccaacagctggtgaaagacagctatggtttatccgcagctggttgtgcagaaat 2288

                                                                        
Query: 361  tatatacgggaacacctgtctcgcgctcttcaacaagcttgttctttgctgcatgcaaga 420
            ||| ||||| |||||||   | || |||||||||||||| || ||||| |||||||||||
Sbjct: 2289 tatctacggaaacacctccgtagcactcttcaacaagctcgtcctttgttgcatgcaaga 2348

                                       
Query: 421  acagggcaccttgcttttccccttggg 447
            |||||||||||||||||||||||||||
Sbjct: 2349 acagggcaccttgcttttccccttggg 2375



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>gb|AY109558.1| Zea mays CL1511_1 mRNA sequence
          Length = 3458

 Score =  202 bits (102), Expect = 8e-49
 Identities = 217/257 (84%)
 Strand = Plus / Plus

                                                                        
Query: 191  catatggatctggaccgcagcttcttgccagtaccttctgcagtaaacgcctccattttc 250
            ||||||||| | || ||||||||| ||||||||||||| ||||| || || ||       
Sbjct: 2119 catatggatttagatcgcagcttcctgccagtaccttcagcagtgaatgcgtctgnnnnn 2178

                                                                        
Query: 251  gaaagttttgttcgtcagaacatcactgattctgaaactgatgtccgttccagcattcag 310
            |||||||||||  | ||||||||||||||||||||||| ||||||||||||||||| || 
Sbjct: 2179 gaaagttttgtcaggcagaacatcactgattctgaaaccgatgtccgttccagcatccaa 2238

                                                                        
Query: 311  cagctggtgaaagatagctatggtttctcagcaggcggtgcttctgaaattatatacggg 370
            |||||||||||||| ||||||||||| || ||||  |||  | | |||||||| ||||| 
Sbjct: 2239 cagctggtgaaagacagctatggtttatccgcagctggttgtgcagaaattatctacgga 2298

                                                                        
Query: 371  aacacctgtctcgcgctcttcaacaagcttgttctttgctgcatgcaagaacagggcacc 430
            |||||||   | || |||||||||||||| || ||||| |||||||||||||||||||||
Sbjct: 2299 aacacctccgtagcactcttcaacaagctcgtcctttgttgcatgcaagaacagggcacc 2358

                             
Query: 431  ttgcttttccccttggg 447
            |||||||||||||||||
Sbjct: 2359 ttgcttttccccttggg 2375



 Score =  135 bits (68), Expect = 2e-28
 Identities = 107/120 (89%)
 Strand = Plus / Plus

                                                                        
Query: 1    cagccagcactattatggttgtcttttccatgagctgctggcatttcaaattggtgaccg 60
            ||||||||||||||||||||| |||||||| ||||| ||||||||||| |||| ||||||
Sbjct: 1929 cagccagcactattatggttgccttttccacgagcttctggcatttcagattgctgaccg 1988

                                                                        
Query: 61   gcatccacaacaagagagagaacctgcagaagtgatatctaaggagatgatagggttttc 120
             |||||||| ||||||||| ||||||| ||||||||| || || |||||||||| |||||
Sbjct: 1989 tcatccacagcaagagagacaacctgcggaagtgatacctcagcagatgataggattttc 2048



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>emb|AJ578659.1|EGU578659 Elaeis guineensis microsatellite DNA, clone mEgCIR3389
          Length = 553

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 14  tatggttgtcttttccatgagctgctggcatttca 48
           ||||||||||| |||||||||||  ||||||||||
Sbjct: 143 tatggttgtctgttccatgagctcttggcatttca 109



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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 73    agagagagaacctgcagaagtgatat 98
             |||||||||||||| |||||||||||
Sbjct: 79019 agagagagaacctggagaagtgatat 78994



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>gb|AC121066.3| Oryctolagus cuniculus strain New Zealand White clone LB1-22B24,
             complete sequence
          Length = 207743

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 73    agagagagaacctgcagaagtgatat 98
             |||||||||||||| |||||||||||
Sbjct: 19482 agagagagaacctggagaagtgatat 19457



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>gb|BC056489.1| Mus musculus nucleoporin 188, mRNA (cDNA clone IMAGE:5698313),
            containing frame-shift errors
          Length = 4268

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 21   gtcttttccatgagctgctgg 41
            |||||||||||||||||||||
Sbjct: 2190 gtcttttccatgagctgctgg 2170



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>gb|AE014175.1| Mus musculus piebald deletion region section 3 of 11 of the complete
             sequence
          Length = 404829

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 134   tccaccctagaaggagctgag 154
             |||||||||||||||||||||
Sbjct: 94399 tccaccctagaaggagctgag 94419



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>dbj|AK129073.1| Mus musculus mRNA for mKIAA0169 protein
          Length = 5670

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 21   gtcttttccatgagctgctgg 41
            |||||||||||||||||||||
Sbjct: 3611 gtcttttccatgagctgctgg 3591



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>gb|BC032090.1| Mus musculus cDNA clone IMAGE:3598686
          Length = 5692

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 21   gtcttttccatgagctgctgg 41
            |||||||||||||||||||||
Sbjct: 3613 gtcttttccatgagctgctgg 3593



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>gb|BC096591.1| Mus musculus nucleoporin 188, mRNA (cDNA clone MGC:106061
            IMAGE:4916413), complete cds
          Length = 5704

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 21   gtcttttccatgagctgctgg 41
            |||||||||||||||||||||
Sbjct: 3612 gtcttttccatgagctgctgg 3592



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>ref|NM_198304.2| Mus musculus nucleoporin 188 (Nup188), mRNA
          Length = 5670

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 21   gtcttttccatgagctgctgg 41
            |||||||||||||||||||||
Sbjct: 3611 gtcttttccatgagctgctgg 3591



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>emb|AL954388.5| Mouse DNA sequence from clone RP23-395P6 on chromosome 2, complete
             sequence
          Length = 131825

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 21    gtcttttccatgagctgctgg 41
             |||||||||||||||||||||
Sbjct: 61046 gtcttttccatgagctgctgg 61026



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>ref|NM_124359.2| Arabidopsis thaliana MMT; S-adenosylmethionine-dependent
            methyltransferase AT5G49810 (MMT) mRNA, complete cds
          Length = 3620

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 9    actattatggttgtcttttccatgagct 36
            |||| |||||||| ||||||||||||||
Sbjct: 1974 actactatggttgccttttccatgagct 2001



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>gb|AC165426.3| Mus musculus BAC clone RP23-157G2 from chromosome 5, complete sequence
          Length = 245594

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   atgtccaccctagaaggagc 150
             ||||||||||||||||||||
Sbjct: 53023 atgtccaccctagaaggagc 53042



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>gb|AC123049.4| Mus musculus BAC clone RP24-360B3 from chromosome 5, complete sequence
          Length = 166292

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    atgtccaccctagaaggagc 150
              ||||||||||||||||||||
Sbjct: 159767 atgtccaccctagaaggagc 159786



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>gb|AC122840.3| Mus musculus BAC clone RP23-193M8 from 13, complete sequence
          Length = 216326

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    acaagagagagaacctgcag 89
             ||||||||||||||||||||
Sbjct: 68413 acaagagagagaacctgcag 68394



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>ref|NM_001030982.1| Gallus gallus Rap guanine nucleotide exchange factor (GEF) 5
           (RAPGEF5), mRNA
          Length = 2398

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 274 cactgattctgaaactgatg 293
           ||||||||||||||||||||
Sbjct: 290 cactgattctgaaactgatg 309



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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 52      tggtgaccggcatccacaac 71
               ||||||||||||||||||||
Sbjct: 1651178 tggtgaccggcatccacaac 1651159



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>emb|AL157833.14| Human DNA sequence from clone RP11-205K10 on chromosome 10 Contains
             part of the KCNMA1 gene for potassium large conductance
             calcium-activated channel subfamily M alpha member 1,
             complete sequence
          Length = 21344

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    tgatatctaaggagatgata 112
             ||||||||||||||||||||
Sbjct: 14600 tgatatctaaggagatgata 14619



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>emb|AJ851807.1| Gallus gallus mRNA for hypothetical protein, clone 35j20
          Length = 2398

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 274 cactgattctgaaactgatg 293
           ||||||||||||||||||||
Sbjct: 290 cactgattctgaaactgatg 309



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>emb|CR937046.1|PT147K15 Pan troglodytes chromosome 11 BAC PTB-147K15, complete sequence
          Length = 197298

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   tgcatgcaagaacagggcac 429
             ||||||||||||||||||||
Sbjct: 89869 tgcatgcaagaacagggcac 89850



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>gb|AY094459.1| Arabidopsis thaliana AT5g49810/K21G20_2 mRNA, complete cds
          Length = 3547

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 9    actattatggttgtcttttccatgagct 36
            |||| |||||||| ||||||||||||||
Sbjct: 1979 actactatggttgccttttccatgagct 2006



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>emb|BX649487.7| Zebrafish DNA sequence from clone DKEY-148C4 in linkage group 9,
             complete sequence
          Length = 201933

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    agctgctggcatttcaaatt 52
             ||||||||||||||||||||
Sbjct: 50593 agctgctggcatttcaaatt 50612



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>gb|AF137380.1|AF137380 Arabidopsis thaliana methionine S-methyltransferase mRNA, complete
            cds
          Length = 3558

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 9    actattatggttgtcttttccatgagct 36
            |||| |||||||| ||||||||||||||
Sbjct: 1973 actactatggttgccttttccatgagct 2000



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>gb|AC093725.3| Homo sapiens BAC clone RP11-4O3 from 4, complete sequence
          Length = 163796

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    gagatgatagggttttcaag 123
              ||||||||||||||||||||
Sbjct: 119580 gagatgatagggttttcaag 119599



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>emb|BX832659.1|CNS09ZRH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH87ZE01 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1940

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 9   actattatggttgtcttttccatgagct 36
           |||| |||||||| ||||||||||||||
Sbjct: 412 actactatggttgccttttccatgagct 439



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>gb|AC138059.3| Homo sapiens chromosome 3 clone RP11-195M4, complete sequence
          Length = 191397

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 410    tgcatgcaagaacagggcac 429
              ||||||||||||||||||||
Sbjct: 160004 tgcatgcaagaacagggcac 159985



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>gb|AC137673.2| Homo sapiens chromosome 3 clone CTD-2195M5, complete sequence
          Length = 139791

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   tgcatgcaagaacagggcac 429
             ||||||||||||||||||||
Sbjct: 55519 tgcatgcaagaacagggcac 55500



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>gb|BT002664.1| Arabidopsis thaliana At5g49810/K21G20_2 gene, complete cds
          Length = 3216

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 9    actattatggttgtcttttccatgagct 36
            |||| |||||||| ||||||||||||||
Sbjct: 1904 actactatggttgccttttccatgagct 1931



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>dbj|AB025612.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21G20
          Length = 35238

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 9    actattatggttgtcttttccatgagct 36
            |||| |||||||| ||||||||||||||
Sbjct: 9370 actactatggttgccttttccatgagct 9397



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>emb|AJ331745.1|HSA331745 Homo sapiens genomic sequence surrounding NotI site, clone NR5-GN5R
          Length = 708

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 432 tgcttttccccttgggacca 451
           ||||||||||||||||||||
Sbjct: 361 tgcttttccccttgggacca 342



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>gb|M17169.1|CRUGRP Chinese hamster glucose-regulated protein GRP78 mRNA, complete cds
          Length = 2334

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 305  attcagcagctggtgaaaga 324
            ||||||||||||||||||||
Sbjct: 1261 attcagcagctggtgaaaga 1280


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,578,635
Number of Sequences: 3902068
Number of extensions: 4578635
Number of successful extensions: 85532
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85411
Number of HSP's gapped (non-prelim): 116
length of query: 503
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 481
effective length of database: 17,147,199,772
effective search space: 8247803090332
effective search space used: 8247803090332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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