| Clone Name | bast61b03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB028870.1| Hordeum vulgare Hv-MMT1 mRNA for S-adenosyl-L-methionine: L-methionine S-methyltransferase, complete cds Length = 3543 Score = 940 bits (474), Expect = 0.0 Identities = 502/506 (99%), Gaps = 4/506 (0%) Strand = Plus / Plus Query: 1 cagccagcactattatggttgtcttttccatgagctgctggcatttcaaattggtgaccg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1993 cagccagcactattatggttgtcttttccatgagctgctggcatttcaaattggtgaccg 2052 Query: 61 gcatccacaacaagagagagaacctgcagaagtgatatctaaggagatgatagggttttc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2053 gcatccacaacaagagagagaacctgcagaagtgatatctaaggagatgatagggttttc 2112 Query: 121 aagttcagctatgtccaccctagaaggagctgagtttttcgttcctggttccatggaatc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2113 aagttcagctatgtccaccctagaaggagctgagtttttcgttcctggttccatggaatc 2172 Query: 181 cggtgtcatacatatggatctggaccgcagcttcttgccagtaccttctgcagtaaacgc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2173 cggtgtcatacatatggatctggaccgcagcttcttgccagtaccttctgcagtaaacgc 2232 Query: 241 ctccattttcgaaagttttgttcgtcagaacatcactgattctgaaactgatgtccgttc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2233 ctccattttcgaaagttttgttcgtcagaacatcactgattctgaaactgatgtccgttc 2292 Query: 301 cagcattcagcagctggtgaaagatagctatggtttctcagcaggcggtgcttctgaaat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2293 cagcattcagcagctggtgaaagatagctatggtttctcagcaggcggtgcttctgaaat 2352 Query: 361 tatatacgggaacacctgtctcgcgctcttcaacaagcttgttctttgctgcatgcaaga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2353 tatatacgggaacacctgtctcgcgctcttcaacaagcttgttctttgctgcatgcaaga 2412 Query: 421 acagggcaccttgcttttccccttggg-accaacgggcattatgtc-acgcagc-aagtt 477 ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| Sbjct: 2413 acagggcaccttgcttttccccttgggaaccaacgggcattatgtcaacgcagcaaagtt 2472 Query: 478 tgtgaatgc-accaccttgactattc 502 ||||||||| |||||||||||||||| Sbjct: 2473 tgtgaatgcaaccaccttgactattc 2498
>ref|XM_475069.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3255 Score = 490 bits (247), Expect = e-135 Identities = 397/447 (88%) Strand = Plus / Plus Query: 1 cagccagcactattatggttgtcttttccatgagctgctggcatttcaaattggtgaccg 60 |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || Sbjct: 1896 cagccagcactattatggttgtcttttccatgagctactggcatttcaaattgctgatcg 1955 Query: 61 gcatccacaacaagagagagaacctgcagaagtgatatctaaggagatgatagggttttc 120 ||||||||||||||| ||| ||||||||||||||| || || |||||||||| ||||| Sbjct: 1956 gcatccacaacaagaaagactgcctgcagaagtgatacctcagaagatgataggattttc 2015 Query: 121 aagttcagctatgtccaccctagaaggagctgagtttttcgttcctggttccatggaatc 180 ||||||||||||||| |||||| ||| |||||| |||||| |||||| |||| |||| Sbjct: 2016 aagttcagctatgtctaccctaaaagaagctgaatttttcattcctgactccaaaaaatc 2075 Query: 181 cggtgtcatacatatggatctggaccgcagcttcttgccagtaccttctgcagtaaacgc 240 | ||||||| ||||||||| | || ||||||||||||||||| ||||||||||| || || Sbjct: 2076 cagtgtcattcatatggatttagatcgcagcttcttgccagtgccttctgcagtgaatgc 2135 Query: 241 ctccattttcgaaagttttgttcgtcagaacatcactgattctgaaactgatgtccgttc 300 ||||||||| |||||||||||| | |||||||| ||||| |||||||||||||||||||| Sbjct: 2136 ctccatttttgaaagttttgttaggcagaacattactgagtctgaaactgatgtccgttc 2195 Query: 301 cagcattcagcagctggtgaaagatagctatggtttctcagcaggcggtgcttctgaaat 360 ||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||| Sbjct: 2196 cagcattcagcagctggtgaaagatagctatggtttcccagcagatggttgttctgaaat 2255 Query: 361 tatatacgggaacacctgtctcgcgctcttcaacaagcttgttctttgctgcatgcaaga 420 |||| || ||||||||||| || |||||||||||||||| ||||||||||| ||||| Sbjct: 2256 attatatggcaacacctgtcttgcactcttcaacaagcttgccctttgctgcatccaaga 2315 Query: 421 acagggcaccttgcttttccccttggg 447 ||||||||||| |||||||||||||| Sbjct: 2316 ccagggcaccttacttttccccttggg 2342
>dbj|AK121285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108O11, full insert sequence Length = 3542 Score = 490 bits (247), Expect = e-135 Identities = 397/447 (88%) Strand = Plus / Plus Query: 1 cagccagcactattatggttgtcttttccatgagctgctggcatttcaaattggtgaccg 60 |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || Sbjct: 1974 cagccagcactattatggttgtcttttccatgagctactggcatttcaaattgctgatcg 2033 Query: 61 gcatccacaacaagagagagaacctgcagaagtgatatctaaggagatgatagggttttc 120 ||||||||||||||| ||| ||||||||||||||| || || |||||||||| ||||| Sbjct: 2034 gcatccacaacaagaaagactgcctgcagaagtgatacctcagaagatgataggattttc 2093 Query: 121 aagttcagctatgtccaccctagaaggagctgagtttttcgttcctggttccatggaatc 180 ||||||||||||||| |||||| ||| |||||| |||||| |||||| |||| |||| Sbjct: 2094 aagttcagctatgtctaccctaaaagaagctgaatttttcattcctgactccaaaaaatc 2153 Query: 181 cggtgtcatacatatggatctggaccgcagcttcttgccagtaccttctgcagtaaacgc 240 | ||||||| ||||||||| | || ||||||||||||||||| ||||||||||| || || Sbjct: 2154 cagtgtcattcatatggatttagatcgcagcttcttgccagtgccttctgcagtgaatgc 2213 Query: 241 ctccattttcgaaagttttgttcgtcagaacatcactgattctgaaactgatgtccgttc 300 ||||||||| |||||||||||| | |||||||| ||||| |||||||||||||||||||| Sbjct: 2214 ctccatttttgaaagttttgttaggcagaacattactgagtctgaaactgatgtccgttc 2273 Query: 301 cagcattcagcagctggtgaaagatagctatggtttctcagcaggcggtgcttctgaaat 360 ||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||| Sbjct: 2274 cagcattcagcagctggtgaaagatagctatggtttcccagcagatggttgttctgaaat 2333 Query: 361 tatatacgggaacacctgtctcgcgctcttcaacaagcttgttctttgctgcatgcaaga 420 |||| || ||||||||||| || |||||||||||||||| ||||||||||| ||||| Sbjct: 2334 attatatggcaacacctgtcttgcactcttcaacaagcttgccctttgctgcatccaaga 2393 Query: 421 acagggcaccttgcttttccccttggg 447 ||||||||||| |||||||||||||| Sbjct: 2394 ccagggcaccttacttttccccttggg 2420
>gb|AC104285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0035J08, complete sequence Length = 117555 Score = 383 bits (193), Expect = e-103 Identities = 322/365 (88%) Strand = Plus / Minus Query: 83 cctgcagaagtgatatctaaggagatgatagggttttcaagttcagctatgtccacccta 142 ||||||||||||||| || || |||||||||| |||||||||||||||||||| |||||| Sbjct: 13974 cctgcagaagtgatacctcagaagatgataggattttcaagttcagctatgtctacccta 13915 Query: 143 gaaggagctgagtttttcgttcctggttccatggaatccggtgtcatacatatggatctg 202 ||| |||||| |||||| |||||| |||| ||||| ||||||| ||||||||| | Sbjct: 13914 aaagaagctgaatttttcattcctgactccaaaaaatccagtgtcattcatatggattta 13855 Query: 203 gaccgcagcttcttgccagtaccttctgcagtaaacgcctccattttcgaaagttttgtt 262 || ||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||| Sbjct: 13854 gatcgcagcttcttgccagtgccttctgcagtgaatgcctccatttttgaaagttttgtt 13795 Query: 263 cgtcagaacatcactgattctgaaactgatgtccgttccagcattcagcagctggtgaaa 322 | |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 13794 aggcagaacattactgagtctgaaactgatgtccgttccagcattcagcagctggtgaaa 13735 Query: 323 gatagctatggtttctcagcaggcggtgcttctgaaattatatacgggaacacctgtctc 382 ||||||||||||||| |||||| ||| ||||||||| |||| || ||||||||||| Sbjct: 13734 gatagctatggtttcccagcagatggttgttctgaaatattatatggcaacacctgtctt 13675 Query: 383 gcgctcttcaacaagcttgttctttgctgcatgcaagaacagggcaccttgcttttcccc 442 || |||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||| Sbjct: 13674 gcactcttcaacaagcttgccctttgctgcatccaagaccagggcaccttacttttcccc 13615 Query: 443 ttggg 447 ||||| Sbjct: 13614 ttggg 13610 Score = 125 bits (63), Expect = 1e-25 Identities = 72/75 (96%) Strand = Plus / Minus Query: 1 cagccagcactattatggttgtcttttccatgagctgctggcatttcaaattggtgaccg 60 |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || Sbjct: 14347 cagccagcactattatggttgtcttttccatgagctactggcatttcaaattgctgatcg 14288 Query: 61 gcatccacaacaaga 75 ||||||||||||||| Sbjct: 14287 gcatccacaacaaga 14273
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 383 bits (193), Expect = e-103 Identities = 322/365 (88%) Strand = Plus / Minus Query: 83 cctgcagaagtgatatctaaggagatgatagggttttcaagttcagctatgtccacccta 142 ||||||||||||||| || || |||||||||| |||||||||||||||||||| |||||| Sbjct: 238454 cctgcagaagtgatacctcagaagatgataggattttcaagttcagctatgtctacccta 238395 Query: 143 gaaggagctgagtttttcgttcctggttccatggaatccggtgtcatacatatggatctg 202 ||| |||||| |||||| |||||| |||| ||||| ||||||| ||||||||| | Sbjct: 238394 aaagaagctgaatttttcattcctgactccaaaaaatccagtgtcattcatatggattta 238335 Query: 203 gaccgcagcttcttgccagtaccttctgcagtaaacgcctccattttcgaaagttttgtt 262 || ||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||| Sbjct: 238334 gatcgcagcttcttgccagtgccttctgcagtgaatgcctccatttttgaaagttttgtt 238275 Query: 263 cgtcagaacatcactgattctgaaactgatgtccgttccagcattcagcagctggtgaaa 322 | |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 238274 aggcagaacattactgagtctgaaactgatgtccgttccagcattcagcagctggtgaaa 238215 Query: 323 gatagctatggtttctcagcaggcggtgcttctgaaattatatacgggaacacctgtctc 382 ||||||||||||||| |||||| ||| ||||||||| |||| || ||||||||||| Sbjct: 238214 gatagctatggtttcccagcagatggttgttctgaaatattatatggcaacacctgtctt 238155 Query: 383 gcgctcttcaacaagcttgttctttgctgcatgcaagaacagggcaccttgcttttcccc 442 || |||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||| Sbjct: 238154 gcactcttcaacaagcttgccctttgctgcatccaagaccagggcaccttacttttcccc 238095 Query: 443 ttggg 447 ||||| Sbjct: 238094 ttggg 238090 Score = 125 bits (63), Expect = 1e-25 Identities = 72/75 (96%) Strand = Plus / Minus Query: 1 cagccagcactattatggttgtcttttccatgagctgctggcatttcaaattggtgaccg 60 |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || Sbjct: 238827 cagccagcactattatggttgtcttttccatgagctactggcatttcaaattgctgatcg 238768 Query: 61 gcatccacaacaaga 75 ||||||||||||||| Sbjct: 238767 gcatccacaacaaga 238753
>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12, complete sequence Length = 160603 Score = 383 bits (193), Expect = e-103 Identities = 322/365 (88%) Strand = Plus / Minus Query: 83 cctgcagaagtgatatctaaggagatgatagggttttcaagttcagctatgtccacccta 142 ||||||||||||||| || || |||||||||| |||||||||||||||||||| |||||| Sbjct: 120638 cctgcagaagtgatacctcagaagatgataggattttcaagttcagctatgtctacccta 120579 Query: 143 gaaggagctgagtttttcgttcctggttccatggaatccggtgtcatacatatggatctg 202 ||| |||||| |||||| |||||| |||| ||||| ||||||| ||||||||| | Sbjct: 120578 aaagaagctgaatttttcattcctgactccaaaaaatccagtgtcattcatatggattta 120519 Query: 203 gaccgcagcttcttgccagtaccttctgcagtaaacgcctccattttcgaaagttttgtt 262 || ||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||| Sbjct: 120518 gatcgcagcttcttgccagtgccttctgcagtgaatgcctccatttttgaaagttttgtt 120459 Query: 263 cgtcagaacatcactgattctgaaactgatgtccgttccagcattcagcagctggtgaaa 322 | |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 120458 aggcagaacattactgagtctgaaactgatgtccgttccagcattcagcagctggtgaaa 120399 Query: 323 gatagctatggtttctcagcaggcggtgcttctgaaattatatacgggaacacctgtctc 382 ||||||||||||||| |||||| ||| ||||||||| |||| || ||||||||||| Sbjct: 120398 gatagctatggtttcccagcagatggttgttctgaaatattatatggcaacacctgtctt 120339 Query: 383 gcgctcttcaacaagcttgttctttgctgcatgcaagaacagggcaccttgcttttcccc 442 || |||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||| Sbjct: 120338 gcactcttcaacaagcttgccctttgctgcatccaagaccagggcaccttacttttcccc 120279 Query: 443 ttggg 447 ||||| Sbjct: 120278 ttggg 120274 Score = 125 bits (63), Expect = 1e-25 Identities = 72/75 (96%) Strand = Plus / Minus Query: 1 cagccagcactattatggttgtcttttccatgagctgctggcatttcaaattggtgaccg 60 |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || Sbjct: 121011 cagccagcactattatggttgtcttttccatgagctactggcatttcaaattgctgatcg 120952 Query: 61 gcatccacaacaaga 75 ||||||||||||||| Sbjct: 120951 gcatccacaacaaga 120937
>gb|AF144079.1|AF144079 Zea mays S-adenosyl-L-methionine:L-methionine S-methyltransferase mRNA, complete cds Length = 3527 Score = 323 bits (163), Expect = 3e-85 Identities = 376/447 (84%) Strand = Plus / Plus Query: 1 cagccagcactattatggttgtcttttccatgagctgctggcatttcaaattggtgaccg 60 ||||||||||||||||||||| |||||||| ||||| ||||||||||| |||| |||||| Sbjct: 1929 cagccagcactattatggttgccttttccacgagcttctggcatttcagattgctgaccg 1988 Query: 61 gcatccacaacaagagagagaacctgcagaagtgatatctaaggagatgatagggttttc 120 |||||||| ||||||||| ||||||| ||||||||| || || |||||||||| ||||| Sbjct: 1989 tcatccacagcaagagagacaacctgcggaagtgatacctcagcagatgataggattttc 2048 Query: 121 aagttcagctatgtccaccctagaaggagctgagtttttcgttcctggttccatggaatc 180 ||||| |||| |||||| | | |||| ||||||||||||||||| ||||| Sbjct: 2049 tgacccagctgtgtctaccctaaaggctactgaatttttcgttcctggttcagctgaatc 2108 Query: 181 cggtgtcatacatatggatctggaccgcagcttcttgccagtaccttctgcagtaaacgc 240 | | | || ||||||||| | || ||||||||| ||||||||||||| ||||| || || Sbjct: 2109 cagcattattcatatggatttagatcgcagcttcctgccagtaccttcagcagtgaatgc 2168 Query: 241 ctccattttcgaaagttttgttcgtcagaacatcactgattctgaaactgatgtccgttc 300 || |||| ||||||||||| | ||||||||||||||||||||||| ||||||||||| Sbjct: 2169 gtctgtttttgaaagttttgtcaggcagaacatcactgattctgaaaccgatgtccgttc 2228 Query: 301 cagcattcagcagctggtgaaagatagctatggtttctcagcaggcggtgcttctgaaat 360 |||||| || |||||||||||||| ||||||||||| || |||| ||| | | ||||| Sbjct: 2229 cagcatccaacagctggtgaaagacagctatggtttatccgcagctggttgtgcagaaat 2288 Query: 361 tatatacgggaacacctgtctcgcgctcttcaacaagcttgttctttgctgcatgcaaga 420 ||| ||||| ||||||| | || |||||||||||||| || ||||| ||||||||||| Sbjct: 2289 tatctacggaaacacctccgtagcactcttcaacaagctcgtcctttgttgcatgcaaga 2348 Query: 421 acagggcaccttgcttttccccttggg 447 ||||||||||||||||||||||||||| Sbjct: 2349 acagggcaccttgcttttccccttggg 2375
>gb|AY109558.1| Zea mays CL1511_1 mRNA sequence Length = 3458 Score = 202 bits (102), Expect = 8e-49 Identities = 217/257 (84%) Strand = Plus / Plus Query: 191 catatggatctggaccgcagcttcttgccagtaccttctgcagtaaacgcctccattttc 250 ||||||||| | || ||||||||| ||||||||||||| ||||| || || || Sbjct: 2119 catatggatttagatcgcagcttcctgccagtaccttcagcagtgaatgcgtctgnnnnn 2178 Query: 251 gaaagttttgttcgtcagaacatcactgattctgaaactgatgtccgttccagcattcag 310 ||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 2179 gaaagttttgtcaggcagaacatcactgattctgaaaccgatgtccgttccagcatccaa 2238 Query: 311 cagctggtgaaagatagctatggtttctcagcaggcggtgcttctgaaattatatacggg 370 |||||||||||||| ||||||||||| || |||| ||| | | |||||||| ||||| Sbjct: 2239 cagctggtgaaagacagctatggtttatccgcagctggttgtgcagaaattatctacgga 2298 Query: 371 aacacctgtctcgcgctcttcaacaagcttgttctttgctgcatgcaagaacagggcacc 430 ||||||| | || |||||||||||||| || ||||| ||||||||||||||||||||| Sbjct: 2299 aacacctccgtagcactcttcaacaagctcgtcctttgttgcatgcaagaacagggcacc 2358 Query: 431 ttgcttttccccttggg 447 ||||||||||||||||| Sbjct: 2359 ttgcttttccccttggg 2375 Score = 135 bits (68), Expect = 2e-28 Identities = 107/120 (89%) Strand = Plus / Plus Query: 1 cagccagcactattatggttgtcttttccatgagctgctggcatttcaaattggtgaccg 60 ||||||||||||||||||||| |||||||| ||||| ||||||||||| |||| |||||| Sbjct: 1929 cagccagcactattatggttgccttttccacgagcttctggcatttcagattgctgaccg 1988 Query: 61 gcatccacaacaagagagagaacctgcagaagtgatatctaaggagatgatagggttttc 120 |||||||| ||||||||| ||||||| ||||||||| || || |||||||||| ||||| Sbjct: 1989 tcatccacagcaagagagacaacctgcggaagtgatacctcagcagatgataggattttc 2048
>emb|AJ578659.1|EGU578659 Elaeis guineensis microsatellite DNA, clone mEgCIR3389 Length = 553 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 14 tatggttgtcttttccatgagctgctggcatttca 48 ||||||||||| ||||||||||| |||||||||| Sbjct: 143 tatggttgtctgttccatgagctcttggcatttca 109
>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold Length = 1889755 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 73 agagagagaacctgcagaagtgatat 98 |||||||||||||| ||||||||||| Sbjct: 79019 agagagagaacctggagaagtgatat 78994
>gb|AC121066.3| Oryctolagus cuniculus strain New Zealand White clone LB1-22B24, complete sequence Length = 207743 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 73 agagagagaacctgcagaagtgatat 98 |||||||||||||| ||||||||||| Sbjct: 19482 agagagagaacctggagaagtgatat 19457
>gb|BC056489.1| Mus musculus nucleoporin 188, mRNA (cDNA clone IMAGE:5698313), containing frame-shift errors Length = 4268 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 gtcttttccatgagctgctgg 41 ||||||||||||||||||||| Sbjct: 2190 gtcttttccatgagctgctgg 2170
>gb|AE014175.1| Mus musculus piebald deletion region section 3 of 11 of the complete sequence Length = 404829 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 tccaccctagaaggagctgag 154 ||||||||||||||||||||| Sbjct: 94399 tccaccctagaaggagctgag 94419
>dbj|AK129073.1| Mus musculus mRNA for mKIAA0169 protein Length = 5670 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 gtcttttccatgagctgctgg 41 ||||||||||||||||||||| Sbjct: 3611 gtcttttccatgagctgctgg 3591
>gb|BC032090.1| Mus musculus cDNA clone IMAGE:3598686 Length = 5692 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 gtcttttccatgagctgctgg 41 ||||||||||||||||||||| Sbjct: 3613 gtcttttccatgagctgctgg 3593
>gb|BC096591.1| Mus musculus nucleoporin 188, mRNA (cDNA clone MGC:106061 IMAGE:4916413), complete cds Length = 5704 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 gtcttttccatgagctgctgg 41 ||||||||||||||||||||| Sbjct: 3612 gtcttttccatgagctgctgg 3592
>ref|NM_198304.2| Mus musculus nucleoporin 188 (Nup188), mRNA Length = 5670 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 gtcttttccatgagctgctgg 41 ||||||||||||||||||||| Sbjct: 3611 gtcttttccatgagctgctgg 3591
>emb|AL954388.5| Mouse DNA sequence from clone RP23-395P6 on chromosome 2, complete sequence Length = 131825 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 gtcttttccatgagctgctgg 41 ||||||||||||||||||||| Sbjct: 61046 gtcttttccatgagctgctgg 61026
>ref|NM_124359.2| Arabidopsis thaliana MMT; S-adenosylmethionine-dependent methyltransferase AT5G49810 (MMT) mRNA, complete cds Length = 3620 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 9 actattatggttgtcttttccatgagct 36 |||| |||||||| |||||||||||||| Sbjct: 1974 actactatggttgccttttccatgagct 2001
>gb|AC165426.3| Mus musculus BAC clone RP23-157G2 from chromosome 5, complete sequence Length = 245594 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 atgtccaccctagaaggagc 150 |||||||||||||||||||| Sbjct: 53023 atgtccaccctagaaggagc 53042
>gb|AC123049.4| Mus musculus BAC clone RP24-360B3 from chromosome 5, complete sequence Length = 166292 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 atgtccaccctagaaggagc 150 |||||||||||||||||||| Sbjct: 159767 atgtccaccctagaaggagc 159786
>gb|AC122840.3| Mus musculus BAC clone RP23-193M8 from 13, complete sequence Length = 216326 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 acaagagagagaacctgcag 89 |||||||||||||||||||| Sbjct: 68413 acaagagagagaacctgcag 68394
>ref|NM_001030982.1| Gallus gallus Rap guanine nucleotide exchange factor (GEF) 5 (RAPGEF5), mRNA Length = 2398 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 cactgattctgaaactgatg 293 |||||||||||||||||||| Sbjct: 290 cactgattctgaaactgatg 309
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 tggtgaccggcatccacaac 71 |||||||||||||||||||| Sbjct: 1651178 tggtgaccggcatccacaac 1651159
>emb|AL157833.14| Human DNA sequence from clone RP11-205K10 on chromosome 10 Contains part of the KCNMA1 gene for potassium large conductance calcium-activated channel subfamily M alpha member 1, complete sequence Length = 21344 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 tgatatctaaggagatgata 112 |||||||||||||||||||| Sbjct: 14600 tgatatctaaggagatgata 14619
>emb|AJ851807.1| Gallus gallus mRNA for hypothetical protein, clone 35j20 Length = 2398 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 cactgattctgaaactgatg 293 |||||||||||||||||||| Sbjct: 290 cactgattctgaaactgatg 309
>emb|CR937046.1|PT147K15 Pan troglodytes chromosome 11 BAC PTB-147K15, complete sequence Length = 197298 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tgcatgcaagaacagggcac 429 |||||||||||||||||||| Sbjct: 89869 tgcatgcaagaacagggcac 89850
>gb|AY094459.1| Arabidopsis thaliana AT5g49810/K21G20_2 mRNA, complete cds Length = 3547 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 9 actattatggttgtcttttccatgagct 36 |||| |||||||| |||||||||||||| Sbjct: 1979 actactatggttgccttttccatgagct 2006
>emb|BX649487.7| Zebrafish DNA sequence from clone DKEY-148C4 in linkage group 9, complete sequence Length = 201933 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 agctgctggcatttcaaatt 52 |||||||||||||||||||| Sbjct: 50593 agctgctggcatttcaaatt 50612
>gb|AF137380.1|AF137380 Arabidopsis thaliana methionine S-methyltransferase mRNA, complete cds Length = 3558 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 9 actattatggttgtcttttccatgagct 36 |||| |||||||| |||||||||||||| Sbjct: 1973 actactatggttgccttttccatgagct 2000
>gb|AC093725.3| Homo sapiens BAC clone RP11-4O3 from 4, complete sequence Length = 163796 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gagatgatagggttttcaag 123 |||||||||||||||||||| Sbjct: 119580 gagatgatagggttttcaag 119599
>emb|BX832659.1|CNS09ZRH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH87ZE01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1940 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 9 actattatggttgtcttttccatgagct 36 |||| |||||||| |||||||||||||| Sbjct: 412 actactatggttgccttttccatgagct 439
>gb|AC138059.3| Homo sapiens chromosome 3 clone RP11-195M4, complete sequence Length = 191397 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tgcatgcaagaacagggcac 429 |||||||||||||||||||| Sbjct: 160004 tgcatgcaagaacagggcac 159985
>gb|AC137673.2| Homo sapiens chromosome 3 clone CTD-2195M5, complete sequence Length = 139791 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tgcatgcaagaacagggcac 429 |||||||||||||||||||| Sbjct: 55519 tgcatgcaagaacagggcac 55500
>gb|BT002664.1| Arabidopsis thaliana At5g49810/K21G20_2 gene, complete cds Length = 3216 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 9 actattatggttgtcttttccatgagct 36 |||| |||||||| |||||||||||||| Sbjct: 1904 actactatggttgccttttccatgagct 1931
>dbj|AB025612.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21G20 Length = 35238 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 9 actattatggttgtcttttccatgagct 36 |||| |||||||| |||||||||||||| Sbjct: 9370 actactatggttgccttttccatgagct 9397
>emb|AJ331745.1|HSA331745 Homo sapiens genomic sequence surrounding NotI site, clone NR5-GN5R Length = 708 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 tgcttttccccttgggacca 451 |||||||||||||||||||| Sbjct: 361 tgcttttccccttgggacca 342
>gb|M17169.1|CRUGRP Chinese hamster glucose-regulated protein GRP78 mRNA, complete cds Length = 2334 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 attcagcagctggtgaaaga 324 |||||||||||||||||||| Sbjct: 1261 attcagcagctggtgaaaga 1280 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,578,635 Number of Sequences: 3902068 Number of extensions: 4578635 Number of successful extensions: 85532 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85411 Number of HSP's gapped (non-prelim): 116 length of query: 503 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 481 effective length of database: 17,147,199,772 effective search space: 8247803090332 effective search space used: 8247803090332 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)