>Y179_TREPA (O83209) Hypothetical protein TP0179|
          Length = 627

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 20/54 (37%), Positives = 24/54 (44%)
 Frame = +3

Query: 219 SAEAPASHAMAKKRKRSSDATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASK 380
           S E  A HA+      SS+   P AIE P  S   RP +   G   + A P SK
Sbjct: 530 SLEFSAPHAIETAASESSEVATPVAIESPPQSEAARPAQ---GDSANLAPPLSK 580

>NOG2_NEUCR (Q7SHR8) Nucleolar GTP-binding protein 2|
          Length = 619

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +3

Query: 246 MAKKRKRSSDATAPAA--IEKPDDSAPERPERTLFGF---KDSAAEPASKDEG 389
           M+KKRKR  D +APA       +D+  E PE    GF    DS  E A++++G
Sbjct: 499 MSKKRKRDEDDSAPATTPASAGEDAKEEDPE-NFAGFDSDSDSEVEEAAEEKG 550

>ATG17_NEUCR (Q872W1) Autophagy-related protein 17|
          Length = 568

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +3

Query: 267 SSDATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASKDEGP 392
           S   + PAA+   D   P RP RT      +AA PA   E P
Sbjct: 6   SHSPSPPAALSPDDAPQPRRPSRTSLHDAAAAAAPALSPESP 47

>H1A_XENLA (P06892) Histone H1A|
          Length = 209

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
 Frame = +3

Query: 204 KILPLSAEAPASHAMAKK--------RKRSSDATAPAAIEKPDDSAPERPERTLFGFKDS 359
           K  PL+AEA    A AKK        +K S+ A +P  ++KP  +A    ++T    K +
Sbjct: 125 KKAPLAAEAKKPAAAAKKTAKSPKKPKKVSAAAKSPKKLKKPAKAAKSPAKKTAVKPKVA 184

Query: 360 AAEPA 374
           A  PA
Sbjct: 185 AKSPA 189

>BYN1_CAEEL (Q20932) Cell adhesion protein byn-1|
          Length = 449

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 225 EAPASHAMAKKRKRSSDATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASKDEGPFFR 401
           E  ++ +   KR+R +   A A+ +K DD   +  E    GF+D   E   +DE    R
Sbjct: 77  ETESATSSVPKRQRGAWLGADASGDKSDDDDDDNEEEDDNGFEDQVVELDPRDEADLAR 135

>CIC_HUMAN (Q96RK0) Protein capicua homolog|
          Length = 1608

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +3

Query: 207 ILPLSAEAPASHAMAKKRKRSSDATAPAAIEKP----DDSAPERP 329
           + P  A+ PASH +A  + +    +A  A E+P      + PERP
Sbjct: 53  VQPSEAQQPASHPVASNQSKEPAESAAVAHERPPGGTGSADPERP 97

>VIOB_CHRVO (Q9S3V0) Violacein biosynthesis protein vioB|
          Length = 998

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 377  RSRLGGRVLEPEEGAFRPLWCRVIRLLYGSRGSSIGAALP 258
            RSRL    ++   G  RPL C ++ L  G  G + G  LP
Sbjct: 895  RSRLMNAAIDLMTGLLRPLSCALMNLPSGIAGRTAGPPLP 934

>YGN9_YEAST (P53121) Hypothetical 90.8 kDa protein in HUL5-SEC27 intergenic|
           region
          Length = 802

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 261 KRSSDATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASKD 383
           K++ D T P  +   DD+ P   E+ L  F     E AS D
Sbjct: 649 KQAQDETTPTTVTSSDDNKPTFSEKILSKFSRPKNENASTD 689

>CARA_COREF (Q8FT41) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 400

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -1

Query: 315 QSHQASLWQQGQ*HRSCASSSSPWRETLGLQHLRAK 208
           +SH  S+W  G   R  A   S WR T  LQ   AK
Sbjct: 90  ESHDGSIWVAGLVIRDLAVRVSNWRATTTLQEEMAK 125

>CALD1_RAT (Q62736) Non-muscle caldesmon (CDM) (L-caldesmon)|
          Length = 531

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 20/61 (32%), Positives = 33/61 (54%)
 Frame = -1

Query: 405 LSGRTALRP*KQARRPSP*TRRGCVPAALVQSHQASLWQQGQ*HRSCASSSSPWRETLGL 226
           + G  A +P K A    P      VPA  V++ + S+W++G    S ++S +P +ET GL
Sbjct: 424 IEGTKASKPMKPAASDLP------VPAEGVRNIK-SMWEKGSVFSSPSASGTPNKETAGL 476

Query: 225 Q 223
           +
Sbjct: 477 K 477

>CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displacement protein)|
            (CDP)
          Length = 1505

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 225  EAPASHAMAKKRKRSSDATAPAAIEKPDDSAPERPE--RTLFGFKDSAAEPASKD 383
            +A  S A A     ++ ++AP        SAP RP   ++LFG  ++A    S+D
Sbjct: 1419 DAATSAAAAPGEGPAAPSSAPPPSNSSSSSAPRRPSSLQSLFGLPEAAGARDSRD 1473

>EF1GB_XENLA (Q91375) Elongation factor 1-gamma-B (EF-1-gamma-B) (eEF-1B|
           gamma-B) (p47)
          Length = 437

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 20/53 (37%), Positives = 23/53 (43%)
 Frame = +3

Query: 225 EAPASHAMAKKRKRSSDATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASKD 383
           E PA     KK+K+     APA    P+D   E         K  AAEP SKD
Sbjct: 235 EKPAKEPKKKKKKKKKATPAPA--PAPEDDLDESE-------KALAAEPKSKD 278

>FUTSC_DROME (Q9W596) Microtubule-associated protein futsch|
          Length = 5412

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 252  KKRKRSSDATAPAAIEKPDDSAPE--RPERTLFGFKDSAAEPASKDEGP 392
            +K K  S   + A   KP     E  RPE  + G KD +A+P S+ + P
Sbjct: 1602 EKSKEPSRRESIAESAKPPIEFREVSRPESVIDGIKDESAKPESRRDSP 1650

>PUR2_CHITE (Q26255) Trifunctional purine biosynthetic protein adenosine-3|
            [Includes: Phosphoribosylamine--glycine ligase (EC
            6.3.4.13) (GARS) (Glycinamide ribonucleotide synthetase)
            (Phosphoribosylglycinamide synthetase);
            Phosphoribosylformylglycinamidin
          Length = 1371

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 311  VIRLLYGSRGSSIGAALPLLRHG 243
            +++ LYGSR S IG  +P   HG
Sbjct: 1124 ILKSLYGSRASVIGKIIPTKPHG 1146

>PEX6_YARLI (P36966) Peroxisomal biogenesis factor 6 (Peroxin-6) (Peroxisome|
           biosynthesis protein PAY4)
          Length = 1024

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 321 LVQSHQASLWQQGQ*HRSCASSSSPWRETLGLQHL 217
           LV S Q  L + G    +   +S PWRE LGL  L
Sbjct: 405 LVDSSQTKLIEGGTTSSAVIPTSVPWREYLGLDTL 439

>STAG1_XENLA (Q9DGN1) Cohesin subunit SA-1 (xSA-1) (Stromal antigen 1 homolog)|
           (SCC3 homolog 1)
          Length = 1265

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +3

Query: 216 LSAEAPASHAMAKKRKRSSDATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASKDEG 389
           LS E      +  KRKR      P+AI+KP  +  +R          S AEP S+  G
Sbjct: 30  LSTELVEDLEVKGKRKRGRPGRPPSAIKKPRKTPGDR----------SRAEPGSRGRG 77

>PLCB1_MOUSE (Q9Z1B3) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           beta 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
           (Phospholipase C-beta-1) (PLC-beta-1) (PLC-I) (PLC-154)
          Length = 1216

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 201 HKILPLSAEAPASHAMAKKRKRSSDATAPAAIEKPDD 311
           H+ILP+ A  P  H +  + +R+   T PA     +D
Sbjct: 759 HRILPVQAIRPGYHYICLRNERNQPLTLPAVFVYIED 795


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,490,136
Number of Sequences: 219361
Number of extensions: 675217
Number of successful extensions: 2243
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2237
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)