ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast61a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase E... 37 0.028
2RPK1_IPONI (P93194) Receptor-like protein kinase precursor (EC 2... 33 0.31
3RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC... 31 1.2
4PGIP_PYRCO (Q05091) Polygalacturonase inhibitor precursor (Polyg... 30 2.0
5DR100_ARATH (Q00874) DNA-damage-repair/toleration protein DRT100... 30 3.5
6MSRB_XYLFA (Q9PF29) Peptide methionine sulfoxide reductase msrB ... 29 4.5
7PYRF_CHRVO (Q7NTL2) Orotidine 5'-phosphate decarboxylase (EC 4.1... 29 5.9
8PSKR_ARATH (Q9ZVR7) Putative phytosulfokine receptor precursor (... 29 5.9
9PGIP2_PHAVU (P58822) Polygalacturonase inhibitor 2 precursor (Po... 29 5.9
10TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precur... 28 7.7
11Y4069_NOCFA (Q5YSC3) UPF0090 protein nfa40690 28 7.7

>EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase EXS precursor|
           (EC 2.7.11.1) (Extra sporogenous cells protein) (EXCESS
           MICROSPOROCYTES1 protein)
          Length = 1192

 Score = 36.6 bits (83), Expect = 0.028
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +1

Query: 256 SERSALLAFLTATPHERKLG-WNTSTPA--CTWVGVTCDAAQSTVLQLRLPGVGLVGAIP 426
           SE ++L++F  +  +   L  WN S+ A  C WVGVTC      V  L LP + L G IP
Sbjct: 25  SETTSLISFKRSLENPSLLSSWNVSSSASHCDWVGVTC--LLGRVNSLSLPSLSLRGQIP 82



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>RPK1_IPONI (P93194) Receptor-like protein kinase precursor (EC 2.7.11.1)|
          Length = 1109

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = +1

Query: 256 SERSALLAFL---TATPHERKLGWNTS--TPACTWVGVTCDAAQSTVLQLRLPGVGLVGA 420
           S+ +ALL+     T+ P +    WN S  TP C+W+GV CD  Q  V  L L   G+ G 
Sbjct: 26  SDGAALLSLTRHWTSIPSDITQSWNASDSTP-CSWLGVECDRRQ-FVDTLNLSSYGISGE 83

Query: 421 IPP 429
             P
Sbjct: 84  FGP 86



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>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)|
          Length = 999

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 319 NTSTPACTWVGVTCDAAQSTVLQLRLPGVGLVGAIP 426
           N     C W+GV+CDA  S V+ + L    LVG  P
Sbjct: 48  NNDVTPCKWLGVSCDAT-SNVVSVDLSSFMLVGPFP 82



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>PGIP_PYRCO (Q05091) Polygalacturonase inhibitor precursor|
           (Polygalacturonase-inhibiting protein)
          Length = 330

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +1

Query: 253 PSERSALLAFLTATPHERKLG-WNTSTPACTWVGVTCDAAQSTVLQLRLPGVGLVGAIP 426
           P ++  LL    A      L  W + T  C W  VTCD+  + +  L +    + G IP
Sbjct: 29  PDDKKVLLQIKKAFGDPYVLASWKSDTDCCDWYCVTCDSTTNRINSLTIFAGQVSGQIP 87



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>DR100_ARATH (Q00874) DNA-damage-repair/toleration protein DRT100 precursor|
          Length = 372

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +1

Query: 253 PSERSALLAFLTATPHERKLG----WNTSTPACT-WVGVTCDAAQSTVLQLRLPG 402
           P +++AL AF ++   E  LG    W+ +T  C  W G++CD     V  + L G
Sbjct: 29  PKDQTALNAFKSSLS-EPNLGIFNTWSENTDCCKEWYGISCDPDSGRVTDISLRG 82



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>MSRB_XYLFA (Q9PF29) Peptide methionine sulfoxide reductase msrB (EC 1.8.4.6)|
          Length = 155

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 247 PPPSERSALLAFLTATPHERKLGWNTSTPAC 339
           P PS+R AL+A L A  H   L   T  P C
Sbjct: 10  PSPSQREALIATLNAEEHRILLQHGTEAPFC 40



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>PYRF_CHRVO (Q7NTL2) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP|
           decarboxylase) (OMPDCase) (OMPdecase)
          Length = 247

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 283 LTATPHERKLGWNTSTPACTWVGVTCDAAQSTVLQLRL 396
           + ATP E  L   T T  C   GV C A ++ +L+L L
Sbjct: 141 IAATPQEHVLRLATLTRDCGLDGVVCSAQEAAMLKLAL 178



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>PSKR_ARATH (Q9ZVR7) Putative phytosulfokine receptor precursor (EC 2.7.11.1)|
           (Phytosulfokine LRR receptor kinase)
          Length = 1008

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +1

Query: 253 PSERSALLAFLTATPHERKLGW---NTSTPACTWVGVTCDAAQS-TVLQLRLPGVGLVGA 420
           P +  AL  F+ A    +  GW   ++ST  C W G+TC++  +  V++L L    L G 
Sbjct: 33  PHDLEALRDFI-AHLEPKPDGWINSSSSTDCCNWTGITCNSNNTGRVIRLELGNKKLSGK 91

Query: 421 I 423
           +
Sbjct: 92  L 92



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>PGIP2_PHAVU (P58822) Polygalacturonase inhibitor 2 precursor|
           (Polygalacturonase-inhibiting protein) (PGIP-2)
          Length = 342

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
 Frame = +1

Query: 253 PSERSALLAFLTATPHERKLG-WNTSTPAC--TWVGVTCDAAQST--VLQLRLPGVGLVG 417
           P ++ ALL       +   L  W  +T  C  TW+GV CD    T  V  L L G+ L  
Sbjct: 34  PQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 93

Query: 418 AIP-PATIA 441
             P P+++A
Sbjct: 94  PYPIPSSLA 102



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>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC|
           2.7.11.1)
          Length = 942

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 316 WNTSTPACTWVGVTCDAAQSTVLQLRLPGVGLVGAIPP 429
           W  + P   W+G+ C     TV+ L    + L G I P
Sbjct: 345 WKGNDPCTNWIGIACSNGNITVISLE--KMELTGTISP 380



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>Y4069_NOCFA (Q5YSC3) UPF0090 protein nfa40690|
          Length = 217

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 434 VAGGMAPTRPTPGRRSCRTVDWAASHVTPT 345
           +AGG+AP RP PG       D A S  T T
Sbjct: 176 LAGGVAPGRPDPGTDRAIAADGAISEETST 205


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,134,365
Number of Sequences: 219361
Number of extensions: 542794
Number of successful extensions: 1845
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1845
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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