ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast61a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome... 62 1e-06
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
3gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 50 0.005
4emb|AL845358.2| Mouse DNA sequence from clone RP23-370J19 on chr... 44 0.33
5gb|AC165074.2| Mus musculus BAC clone RP24-501F1 from chromosome... 42 1.3
6ref|NM_198925.1| Homo sapiens sema domain, immunoglobulin domain... 42 1.3
7ref|NM_020210.2| Homo sapiens sema domain, immunoglobulin domain... 42 1.3
8gb|AC151982.4| Mus musculus BAC clone RP23-445J16 from chromosom... 42 1.3
9gb|AY356152.1| Canis familiaris isolate cOR10S2P olfactory recep... 42 1.3
10gb|AY445887.1| Homo sapiens semaphorin 4b precursor (SEMA4B) mRN... 42 1.3
11gb|AY358392.1| Homo sapiens clone DNA67962 semaphorin C (UNQ749)... 42 1.3
12emb|BX537671.1|HSM806571 Homo sapiens mRNA; cDNA DKFZp686A04130 ... 42 1.3
13emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete ... 42 1.3
14emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete ... 42 1.3
15gb|BC094849.1| Homo sapiens sema domain, immunoglobulin domain (... 42 1.3
16gb|BC017658.1| Homo sapiens sema domain, immunoglobulin domain (... 42 1.3
17gb|BC019013.2| Homo sapiens sema domain, immunoglobulin domain (... 42 1.3
18emb|AL390082.1|IRO068748 Homo sapiens mRNA full length insert cD... 42 1.3
19emb|AL390081.1|IR1955967 Homo sapiens mRNA full length insert cD... 42 1.3
20emb|AL390080.1|IRO159523 Homo sapiens mRNA full length insert cD... 42 1.3
21gb|BC010701.1| Homo sapiens sema domain, immunoglobulin domain (... 42 1.3
22gb|AE005851.1| Caulobacter crescentus CB15 section 177 of 359 of... 42 1.3
23emb|CR605527.1| full-length cDNA clone CS0DC004YJ18 of Neuroblas... 42 1.3
24gb|AF258561.1|AF258561 Homo sapiens PP3686 mRNA, complete cds 42 1.3
25ref|NG_004986.1| Canis familiaris cOR10S2P olfactory receptor fa... 42 1.3
26gb|AC091167.19| Homo sapiens chromosome 15, clone RP11-697E2, co... 42 1.3
27dbj|AK026108.1| Homo sapiens cDNA: FLJ22455 fis, clone HRC09777 42 1.3
28dbj|AK027083.1| Homo sapiens cDNA: FLJ23430 fis, clone HRC11866 42 1.3
29gb|AC156581.4| Pan troglodytes BAC clone CH251-372H22 from chrom... 42 1.3
30emb|CT030740.8| Mouse DNA sequence from clone RP24-312D7 on chro... 42 1.3
31gb|AC091332.8| Mus musculus chromosome 17, clone RP23-12K1, comp... 42 1.3
32gb|BC110853.1| Homo sapiens sema domain, immunoglobulin domain (... 42 1.3
33emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 42 1.3
34dbj|AB051532.1| Homo sapiens mRNA for KIAA1745 protein, partial cds 42 1.3
35ref|XM_467050.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.2
36ref|NM_189937.1| Oryza sativa (japonica cultivar-group), predic... 40 5.2
37gb|AY260904.1| Rhodospirillum centenum Abc2b (abc2b), Abc2a (abc... 40 5.2
38gb|AC122373.4| Mus musculus BAC clone RP23-464E7 from chromosome... 40 5.2
39gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 5.2
40gb|AC116099.2| Homo sapiens chromosome 1 clone RP11-338F23, comp... 40 5.2
41gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 5.2
42dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
43dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
44dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
45dbj|AP003451.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
46dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
47dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
48dbj|AP005400.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
49dbj|AP004868.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
50dbj|AP004839.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
51dbj|AK111742.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
52emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 5.2
53gb|AC166361.2| Mus musculus BAC clone RP23-293N23 from chromosom... 40 5.2 
>gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1214_E03,
             complete sequence
          Length = 144601

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 82/99 (82%)
 Strand = Plus / Minus

                                                                         
Query: 182   gtcggcgcggctgcagctggtgcccgccgctccgggcgcgtcgctggcagagcgcgcgca 241
             ||||||| ||||||||||||| || || || |||||||||||| |||| ||||| |||  
Sbjct: 80973 gtcggcgaggctgcagctggtcccggctgccccgggcgcgtcgatggccgagcgggcgag 80914

                                                    
Query: 242   ggacgaccggcaccggcacgcctacatctccgcgaggct 280
             ||| ||| |||  |||||||  ||||||||||| |||||
Sbjct: 80913 ggatgacaggcggcggcacgagtacatctccgccaggct 80875



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 347   ggcgtcggcgttcgcgatgccgctgacgtcgggcgcgtacac 388
             ||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct: 80808 ggcgtcggcgttcgctatgccgctgtcgtcgggggcgtacac 80767
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 82/99 (82%)
 Strand = Plus / Minus

                                                                            
Query: 182      gtcggcgcggctgcagctggtgcccgccgctccgggcgcgtcgctggcagagcgcgcgca 241
                ||||||| ||||||||||||| || || || |||||||||||| |||| ||||| |||  
Sbjct: 27484843 gtcggcgaggctgcagctggtcccggctgccccgggcgcgtcgatggccgagcgggcgag 27484784

                                                       
Query: 242      ggacgaccggcaccggcacgcctacatctccgcgaggct 280
                ||| ||| |||  |||||||  ||||||||||| |||||
Sbjct: 27484783 ggatgacaggcggcggcacgagtacatctccgccaggct 27484745



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 347      ggcgtcggcgttcgcgatgccgctgacgtcgggcgcgtacac 388
                ||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct: 27484678 ggcgtcggcgttcgctatgccgctgtcgtcgggggcgtacac 27484637
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 173    gagcggggcgtcggcgcggctgcag 197
              |||||||||||||||||||||||||
Sbjct: 485059 gagcggggcgtcggcgcggctgcag 485083
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>emb|AL845358.2| Mouse DNA sequence from clone RP23-370J19 on chromosome 2, complete
            sequence
          Length = 31523

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 31   tccgctctgctctgctctgttc 52
            ||||||||||||||||||||||
Sbjct: 7806 tccgctctgctctgctctgttc 7785
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>gb|AC165074.2| Mus musculus BAC clone RP24-501F1 from chromosome 12, complete sequence
          Length = 166016

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 25     ctcccctccgctctgctctgctctg 49
              |||| ||||||||||||||||||||
Sbjct: 138507 ctccactccgctctgctctgctctg 138531
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>ref|NM_198925.1| Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane
            domain (TM) and short cytoplasmic domain, (semaphorin) 4B
            (SEMA4B), transcript variant 2, mRNA
          Length = 3809

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 23   acctcccctccgctctgctct 43
            |||||||||||||||||||||
Sbjct: 2830 acctcccctccgctctgctct 2850
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>ref|NM_020210.2| Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane
            domain (TM) and short cytoplasmic domain, (semaphorin) 4B
            (SEMA4B), transcript variant 1, mRNA
          Length = 3843

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 23   acctcccctccgctctgctct 43
            |||||||||||||||||||||
Sbjct: 2864 acctcccctccgctctgctct 2884
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>gb|AC151982.4| Mus musculus BAC clone RP23-445J16 from chromosome 12, complete sequence
          Length = 183898

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 25     ctcccctccgctctgctctgctctg 49
              |||| ||||||||||||||||||||
Sbjct: 165787 ctccactccgctctgctctgctctg 165763
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>gb|AY356152.1| Canis familiaris isolate cOR10S2P olfactory receptor family 10
           subfamily S pseudogene, partial sequence
          Length = 609

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 142 cgggcggtgcggatcggcagcaccg 166
           ||||||||||||||| |||||||||
Sbjct: 423 cgggcggtgcggatccgcagcaccg 399
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>gb|AY445887.1| Homo sapiens semaphorin 4b precursor (SEMA4B) mRNA, complete cds
          Length = 3807

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 23   acctcccctccgctctgctct 43
            |||||||||||||||||||||
Sbjct: 2841 acctcccctccgctctgctct 2861
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>gb|AY358392.1| Homo sapiens clone DNA67962 semaphorin C (UNQ749) mRNA, complete cds
          Length = 3781

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 23   acctcccctccgctctgctct 43
            |||||||||||||||||||||
Sbjct: 2821 acctcccctccgctctgctct 2841
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>emb|BX537671.1|HSM806571 Homo sapiens mRNA; cDNA DKFZp686A04130 (from clone DKFZp686A04130)
          Length = 3752

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 23   acctcccctccgctctgctct 43
            |||||||||||||||||||||
Sbjct: 2783 acctcccctccgctctgctct 2803
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>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 140    cgcgggcggtgcggatcggca 160
              |||||||||||||||||||||
Sbjct: 230904 cgcgggcggtgcggatcggca 230924
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>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29
          Length = 300800

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 133    cggctgccgcgggcggtgcgg 153
              |||||||||||||||||||||
Sbjct: 270113 cggctgccgcgggcggtgcgg 270093
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>gb|BC094849.1| Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane
            domain (TM) and short cytoplasmic domain, (semaphorin)
            4B, mRNA (cDNA clone IMAGE:4866983), partial cds
          Length = 2606

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 23   acctcccctccgctctgctct 43
            |||||||||||||||||||||
Sbjct: 1634 acctcccctccgctctgctct 1654
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>gb|BC017658.1| Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane
            domain (TM) and short cytoplasmic domain, (semaphorin)
            4B, mRNA (cDNA clone IMAGE:3905299), partial cds
          Length = 2408

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 23   acctcccctccgctctgctct 43
            |||||||||||||||||||||
Sbjct: 1444 acctcccctccgctctgctct 1464
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>gb|BC019013.2| Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane
           domain (TM) and short cytoplasmic domain, (semaphorin)
           4B, mRNA (cDNA clone IMAGE:4562751)
          Length = 1594

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 23  acctcccctccgctctgctct 43
           |||||||||||||||||||||
Sbjct: 625 acctcccctccgctctgctct 645
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>emb|AL390082.1|IRO068748 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 68748
          Length = 1487

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 23  acctcccctccgctctgctct 43
           |||||||||||||||||||||
Sbjct: 520 acctcccctccgctctgctct 540
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>emb|AL390081.1|IR1955967 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1955967
          Length = 2967

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 23   acctcccctccgctctgctct 43
            |||||||||||||||||||||
Sbjct: 2090 acctcccctccgctctgctct 2110
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>emb|AL390080.1|IRO159523 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 159523
          Length = 1415

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 23  acctcccctccgctctgctct 43
           |||||||||||||||||||||
Sbjct: 448 acctcccctccgctctgctct 468
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>gb|BC010701.1| Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane
            domain (TM) and short cytoplasmic domain, (semaphorin)
            4B, mRNA (cDNA clone IMAGE:3855397), partial cds
          Length = 2641

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 23   acctcccctccgctctgctct 43
            |||||||||||||||||||||
Sbjct: 1662 acctcccctccgctctgctct 1682
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>gb|AE005851.1| Caulobacter crescentus CB15 section 177 of 359 of the complete genome
          Length = 10661

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agcggggcgtcggcgcggctg 194
            |||||||||||||||||||||
Sbjct: 1916 agcggggcgtcggcgcggctg 1936
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>emb|CR605527.1| full-length cDNA clone CS0DC004YJ18 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1845

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 23  acctcccctccgctctgctct 43
           |||||||||||||||||||||
Sbjct: 932 acctcccctccgctctgctct 952
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>gb|AF258561.1|AF258561 Homo sapiens PP3686 mRNA, complete cds
          Length = 1880

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 23  acctcccctccgctctgctct 43
           |||||||||||||||||||||
Sbjct: 914 acctcccctccgctctgctct 934
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>ref|NG_004986.1| Canis familiaris cOR10S2P olfactory receptor family 10 subfamily S
           pseudogene (cOR10S2P) on chromosome 5
          Length = 609

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 142 cgggcggtgcggatcggcagcaccg 166
           ||||||||||||||| |||||||||
Sbjct: 423 cgggcggtgcggatccgcagcaccg 399
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>gb|AC091167.19| Homo sapiens chromosome 15, clone RP11-697E2, complete sequence
          Length = 202381

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 23     acctcccctccgctctgctct 43
              |||||||||||||||||||||
Sbjct: 109963 acctcccctccgctctgctct 109943
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>dbj|AK026108.1| Homo sapiens cDNA: FLJ22455 fis, clone HRC09777
          Length = 3528

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 23   acctcccctccgctctgctct 43
            |||||||||||||||||||||
Sbjct: 2563 acctcccctccgctctgctct 2583
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>dbj|AK027083.1| Homo sapiens cDNA: FLJ23430 fis, clone HRC11866
          Length = 1779

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 23  acctcccctccgctctgctct 43
           |||||||||||||||||||||
Sbjct: 814 acctcccctccgctctgctct 834
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>gb|AC156581.4| Pan troglodytes BAC clone CH251-372H22 from chromosome unknown,
             complete sequence
          Length = 188418

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 29    cctccgctctgctctgctctg 49
             |||||||||||||||||||||
Sbjct: 17929 cctccgctctgctctgctctg 17909
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>emb|CT030740.8| Mouse DNA sequence from clone RP24-312D7 on chromosome 17, complete
             sequence
          Length = 215154

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 24    cctcccctccgctctgctctgctct 48
             ||||| |||||||||||||||||||
Sbjct: 25570 cctccgctccgctctgctctgctct 25594
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>gb|AC091332.8| Mus musculus chromosome 17, clone RP23-12K1, complete sequence
          Length = 216370

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 24     cctcccctccgctctgctctgctct 48
              ||||| |||||||||||||||||||
Sbjct: 149372 cctccgctccgctctgctctgctct 149396
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>gb|BC110853.1| Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane
            domain (TM) and short cytoplasmic domain, (semaphorin)
            4B, transcript variant 1, mRNA (cDNA clone MGC:131831
            IMAGE:6020867), complete cds
          Length = 3544

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 23   acctcccctccgctctgctct 43
            |||||||||||||||||||||
Sbjct: 2585 acctcccctccgctctgctct 2605
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 121     gtgtcgcggcgtcggctgccg 141
               |||||||||||||||||||||
Sbjct: 1677779 gtgtcgcggcgtcggctgccg 1677799
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>dbj|AB051532.1| Homo sapiens mRNA for KIAA1745 protein, partial cds
          Length = 3766

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 23   acctcccctccgctctgctct 43
            |||||||||||||||||||||
Sbjct: 2818 acctcccctccgctctgctct 2838
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>ref|XM_467050.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1887

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 184  cggcgcggctgcagctggtgcccg 207
            ||||| ||||||||||||||||||
Sbjct: 1082 cggcggggctgcagctggtgcccg 1105
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>ref|NM_189937.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 846

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 304 gccggcgccgcgcggccgagacgtcgaccgcc 335
           |||||||||||||||| | |||| ||||||||
Sbjct: 108 gccggcgccgcgcggcggcgacgacgaccgcc 77
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>gb|AY260904.1| Rhodospirillum centenum Abc2b (abc2b), Abc2a (abc2a), RecX (recX),
            and CstS1 (cstS1) genes, complete cds; and unknown gene
          Length = 5508

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 200  ggtgcccgccgctccgggcg 219
            ||||||||||||||||||||
Sbjct: 2831 ggtgcccgccgctccgggcg 2812
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>gb|AC122373.4| Mus musculus BAC clone RP23-464E7 from chromosome 13, complete sequence
          Length = 192969

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    ctccgctctgctctgctctg 49
             ||||||||||||||||||||
Sbjct: 26598 ctccgctctgctctgctctg 26579
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 236     cgcgcaggacgaccggcacc 255
               ||||||||||||||||||||
Sbjct: 3009548 cgcgcaggacgaccggcacc 3009529
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>gb|AC116099.2| Homo sapiens chromosome 1 clone RP11-338F23, complete sequence
          Length = 184007

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 28     ccctccgctctgctctgctctgtt 51
              ||||| ||||||||||||||||||
Sbjct: 139156 ccctctgctctgctctgctctgtt 139179
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 316    cggccgagacgtcgaccgcc 335
              ||||||||||||||||||||
Sbjct: 977504 cggccgagacgtcgaccgcc 977523
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 239      gcaggacgaccggcaccggc 258
                ||||||||||||||||||||
Sbjct: 10896899 gcaggacgaccggcaccggc 10896880
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 184      cggcgcggctgcagctggtgcccg 207
                ||||| ||||||||||||||||||
Sbjct: 26118879 cggcggggctgcagctggtgcccg 26118856
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 304      gccggcgccgcgcggccgagacgtcgaccgcc 335
                |||||||||||||||| | |||| ||||||||
Sbjct: 39913452 gccggcgccgcgcggcggcgacgacgaccgcc 39913483
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>dbj|AP003451.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0413C03
          Length = 162161

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 304  gccggcgccgcgcggccgagacgtcgaccgcc 335
            |||||||||||||||| | |||| ||||||||
Sbjct: 4903 gccggcgccgcgcggcggcgacgacgaccgcc 4934
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>dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0004D12
          Length = 138136

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 304   gccggcgccgcgcggccgagacgtcgaccgcc 335
             |||||||||||||||| | |||| ||||||||
Sbjct: 94160 gccggcgccgcgcggcggcgacgacgaccgcc 94191
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>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0512H04
          Length = 151049

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 239    gcaggacgaccggcaccggc 258
              ||||||||||||||||||||
Sbjct: 120622 gcaggacgaccggcaccggc 120603
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>dbj|AP005400.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0698G06
          Length = 138282

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 239   gcaggacgaccggcaccggc 258
             ||||||||||||||||||||
Sbjct: 36604 gcaggacgaccggcaccggc 36585
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>dbj|AP004868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0048B08
          Length = 146874

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 184   cggcgcggctgcagctggtgcccg 207
             ||||| ||||||||||||||||||
Sbjct: 15706 cggcggggctgcagctggtgcccg 15683
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>dbj|AP004839.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0519A12
          Length = 156676

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 184    cggcgcggctgcagctggtgcccg 207
              ||||| ||||||||||||||||||
Sbjct: 126325 cggcggggctgcagctggtgcccg 126302
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>dbj|AK111742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050K14, full
           insert sequence
          Length = 1623

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 184 cggcgcggctgcagctggtgcccg 207
           ||||| ||||||||||||||||||
Sbjct: 639 cggcggggctgcagctggtgcccg 662
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 365     gccgctgacgtcgggcgcgt 384
               ||||||||||||||||||||
Sbjct: 2353347 gccgctgacgtcgggcgcgt 2353366
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>gb|AC166361.2| Mus musculus BAC clone RP23-293N23 from chromosome 12, complete sequence
          Length = 212100

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     cctccgctctgctctgctct 48
              ||||||||||||||||||||
Sbjct: 146263 cctccgctctgctctgctct 146282


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,116,900
Number of Sequences: 3902068
Number of extensions: 2116900
Number of successful extensions: 55314
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54522
Number of HSP's gapped (non-prelim): 790
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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