| Clone Name | bast61a01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK119703.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-D11, full insert sequence Length = 907 Score = 149 bits (75), Expect = 9e-33 Identities = 114/127 (89%) Strand = Plus / Plus Query: 293 ttgataggatggtttcccagcttcggtcgacatccaagtactacactggatatcccaagg 352 ||||| ||||||| || || ||||||||||| | || ||||||||||||||||||||||| Sbjct: 303 ttgatcggatggtgtctcaacttcggtcgacgtgcaggtactacactggatatcccaagg 362 Query: 353 atctagggccatcaagaatcataccgttcacatcagagcgtcagtttgtgcagctattac 412 ||||||||||||||||||| ||||||||||| ||||||||||| || |||||||| || | Sbjct: 363 atctagggccatcaagaattataccgttcacgtcagagcgtcaattcgtgcagctgttgc 422 Query: 413 atgaagg 419 ||||||| Sbjct: 423 atgaagg 429
>dbj|AK108156.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-G07, full insert sequence Length = 998 Score = 133 bits (67), Expect = 5e-28 Identities = 118/135 (87%) Strand = Plus / Plus Query: 285 gtcattttttgataggatggtttcccagcttcggtcgacatccaagtactacactggata 344 ||||||| ||||| ||||||| || || |||||||| ||| || ||||||||||||||| Sbjct: 342 gtcatttcttgatcggatggtgtctcaacttcggtcagcatgcaggtactacactggata 401 Query: 345 tcccaaggatctagggccatcaagaatcataccgttcacatcagagcgtcagtttgtgca 404 |||||||||||| |||||||||||||| ||||| ||||| ||||||||||| || ||||| Sbjct: 402 tcccaaggatctcgggccatcaagaattataccattcacgtcagagcgtcaattcgtgca 461 Query: 405 gctattacatgaagg 419 ||| || |||||||| Sbjct: 462 gctgttgcatgaagg 476
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 131 bits (66), Expect = 2e-27 Identities = 84/90 (93%) Strand = Plus / Minus Query: 330 gtactacactggatatcccaaggatctagggccatcaagaatcataccgttcacatcaga 389 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 16147478 gtactacactggatatcccaaggatctagggccatcaagaattataccgttcacgtcaga 16147419 Query: 390 gcgtcagtttgtgcagctattacatgaagg 419 |||||| || |||||||| || |||||||| Sbjct: 16147418 gcgtcaattcgtgcagctgttgcatgaagg 16147389
>dbj|AP004681.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0040M10 Length = 162790 Score = 131 bits (66), Expect = 2e-27 Identities = 84/90 (93%) Strand = Plus / Minus Query: 330 gtactacactggatatcccaaggatctagggccatcaagaatcataccgttcacatcaga 389 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 52271 gtactacactggatatcccaaggatctagggccatcaagaattataccgttcacgtcaga 52212 Query: 390 gcgtcagtttgtgcagctattacatgaagg 419 |||||| || |||||||| || |||||||| Sbjct: 52211 gcgtcaattcgtgcagctgttgcatgaagg 52182
>gb|AC174464.1| Oryza sativa (japonica cultivar-group) chromosome 10 BAC clone OSJNBb0094D21, complete sequence Length = 127821 Score = 115 bits (58), Expect = 1e-22 Identities = 82/90 (91%) Strand = Plus / Minus Query: 330 gtactacactggatatcccaaggatctagggccatcaagaatcataccgttcacatcaga 389 ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| Sbjct: 70182 gtactacactggatatcccaaggatctcgggccatcaagaattataccattcacgtcaga 70123 Query: 390 gcgtcagtttgtgcagctattacatgaagg 419 |||||| || |||||||| || |||||||| Sbjct: 70122 gcgtcaattcgtgcagctgttgcatgaagg 70093
>gb|AC125103.4| Mus musculus BAC clone RP24-218M19 from chromosome 3, complete sequence Length = 184917 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 gatatcccaaggatctagggc 361 ||||||||||||||||||||| Sbjct: 40148 gatatcccaaggatctagggc 40128
>gb|AC102819.5| Mus musculus chromosome 8, clone RP23-117H21, complete sequence Length = 191116 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 gtttgtgcagctattacatg 415 |||||||||||||||||||| Sbjct: 22703 gtttgtgcagctattacatg 22722
>emb|AL355886.4|CNS05TCX Human chromosome 14 DNA sequence BAC R-372C16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 164609 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 atccaagtactacactggat 343 |||||||||||||||||||| Sbjct: 79454 atccaagtactacactggat 79435 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,217,547 Number of Sequences: 3902068 Number of extensions: 2217547 Number of successful extensions: 33172 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33152 Number of HSP's gapped (non-prelim): 20 length of query: 422 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 400 effective length of database: 17,147,199,772 effective search space: 6858879908800 effective search space used: 6858879908800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)