ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast61a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK119703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 9e-33
2dbj|AK108156.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 5e-28
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
4dbj|AP004681.2| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
5gb|AC174464.1| Oryza sativa (japonica cultivar-group) chromosome... 115 1e-22
6gb|AC125103.4| Mus musculus BAC clone RP24-218M19 from chromosom... 42 1.4
7gb|AC102819.5| Mus musculus chromosome 8, clone RP23-117H21, com... 40 5.7
8emb|AL355886.4|CNS05TCX Human chromosome 14 DNA sequence BAC R-3... 40 5.7

>dbj|AK119703.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-D11, full
           insert sequence
          Length = 907

 Score =  149 bits (75), Expect = 9e-33
 Identities = 114/127 (89%)
 Strand = Plus / Plus

                                                                       
Query: 293 ttgataggatggtttcccagcttcggtcgacatccaagtactacactggatatcccaagg 352
           ||||| ||||||| || || ||||||||||| | || |||||||||||||||||||||||
Sbjct: 303 ttgatcggatggtgtctcaacttcggtcgacgtgcaggtactacactggatatcccaagg 362

                                                                       
Query: 353 atctagggccatcaagaatcataccgttcacatcagagcgtcagtttgtgcagctattac 412
           ||||||||||||||||||| ||||||||||| ||||||||||| || |||||||| || |
Sbjct: 363 atctagggccatcaagaattataccgttcacgtcagagcgtcaattcgtgcagctgttgc 422

                  
Query: 413 atgaagg 419
           |||||||
Sbjct: 423 atgaagg 429



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>dbj|AK108156.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-G07, full
           insert sequence
          Length = 998

 Score =  133 bits (67), Expect = 5e-28
 Identities = 118/135 (87%)
 Strand = Plus / Plus

                                                                       
Query: 285 gtcattttttgataggatggtttcccagcttcggtcgacatccaagtactacactggata 344
           ||||||| ||||| ||||||| || || ||||||||  ||| || |||||||||||||||
Sbjct: 342 gtcatttcttgatcggatggtgtctcaacttcggtcagcatgcaggtactacactggata 401

                                                                       
Query: 345 tcccaaggatctagggccatcaagaatcataccgttcacatcagagcgtcagtttgtgca 404
           |||||||||||| |||||||||||||| ||||| ||||| ||||||||||| || |||||
Sbjct: 402 tcccaaggatctcgggccatcaagaattataccattcacgtcagagcgtcaattcgtgca 461

                          
Query: 405 gctattacatgaagg 419
           ||| || ||||||||
Sbjct: 462 gctgttgcatgaagg 476



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  131 bits (66), Expect = 2e-27
 Identities = 84/90 (93%)
 Strand = Plus / Minus

                                                                            
Query: 330      gtactacactggatatcccaaggatctagggccatcaagaatcataccgttcacatcaga 389
                |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 16147478 gtactacactggatatcccaaggatctagggccatcaagaattataccgttcacgtcaga 16147419

                                              
Query: 390      gcgtcagtttgtgcagctattacatgaagg 419
                |||||| || |||||||| || ||||||||
Sbjct: 16147418 gcgtcaattcgtgcagctgttgcatgaagg 16147389



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>dbj|AP004681.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0040M10
          Length = 162790

 Score =  131 bits (66), Expect = 2e-27
 Identities = 84/90 (93%)
 Strand = Plus / Minus

                                                                         
Query: 330   gtactacactggatatcccaaggatctagggccatcaagaatcataccgttcacatcaga 389
             |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 52271 gtactacactggatatcccaaggatctagggccatcaagaattataccgttcacgtcaga 52212

                                           
Query: 390   gcgtcagtttgtgcagctattacatgaagg 419
             |||||| || |||||||| || ||||||||
Sbjct: 52211 gcgtcaattcgtgcagctgttgcatgaagg 52182



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>gb|AC174464.1| Oryza sativa (japonica cultivar-group) chromosome 10 BAC clone
             OSJNBb0094D21, complete sequence
          Length = 127821

 Score =  115 bits (58), Expect = 1e-22
 Identities = 82/90 (91%)
 Strand = Plus / Minus

                                                                         
Query: 330   gtactacactggatatcccaaggatctagggccatcaagaatcataccgttcacatcaga 389
             ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||
Sbjct: 70182 gtactacactggatatcccaaggatctcgggccatcaagaattataccattcacgtcaga 70123

                                           
Query: 390   gcgtcagtttgtgcagctattacatgaagg 419
             |||||| || |||||||| || ||||||||
Sbjct: 70122 gcgtcaattcgtgcagctgttgcatgaagg 70093



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>gb|AC125103.4| Mus musculus BAC clone RP24-218M19 from chromosome 3, complete sequence
          Length = 184917

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 341   gatatcccaaggatctagggc 361
             |||||||||||||||||||||
Sbjct: 40148 gatatcccaaggatctagggc 40128



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>gb|AC102819.5| Mus musculus chromosome 8, clone RP23-117H21, complete sequence
          Length = 191116

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 396   gtttgtgcagctattacatg 415
             ||||||||||||||||||||
Sbjct: 22703 gtttgtgcagctattacatg 22722



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>emb|AL355886.4|CNS05TCX Human chromosome 14 DNA sequence BAC R-372C16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 164609

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   atccaagtactacactggat 343
             ||||||||||||||||||||
Sbjct: 79454 atccaagtactacactggat 79435


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,217,547
Number of Sequences: 3902068
Number of extensions: 2217547
Number of successful extensions: 33172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33152
Number of HSP's gapped (non-prelim): 20
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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