ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast60h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane ... 38 0.007
2PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic... 30 2.0
3PIP1_ATRCA (P42767) Aquaporin PIP-type 30 2.6
4PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane ... 29 4.4
5PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic... 28 5.7
6PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane ... 28 7.4
7PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic... 28 7.4
8PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane ... 28 9.7

>PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane intrinsic|
           protein 2.6) (OsPIP2.6)
          Length = 282

 Score = 38.1 bits (87), Expect = 0.007
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +1

Query: 1   YITVATVIGYKVQSAADPC 57
           YITVATVIGYKVQS+AD C
Sbjct: 52  YITVATVIGYKVQSSADQC 70



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>PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic protein 2a)|
           (PIP2a)
          Length = 287

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +1

Query: 1   YITVATVIGYKVQSAAD 51
           YITV TVIGYK+QS  D
Sbjct: 53  YITVLTVIGYKIQSDTD 69



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>PIP1_ATRCA (P42767) Aquaporin PIP-type|
          Length = 282

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +1

Query: 1   YITVATVIGYKVQSAADPC 57
           YITVATVIGYK ++  DPC
Sbjct: 54  YITVATVIGYKKET--DPC 70



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>PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane intrinsic|
           protein 2.2) (OsPIP2.2)
          Length = 288

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = +1

Query: 1   YITVATVIGYKVQSAA 48
           YITVATVIGYK QS A
Sbjct: 55  YITVATVIGYKHQSDA 70



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>PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic protein 2b)|
          (PIP2b) (TMP2b)
          Length = 285

 Score = 28.5 bits (62), Expect = 5.7
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +1

Query: 1  YITVATVIGYKVQS 42
          YITV TVIGYK+QS
Sbjct: 51 YITVLTVIGYKIQS 64



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>PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane intrinsic|
          protein 2.3) (OsPIP2.3)
          Length = 290

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +1

Query: 1  YITVATVIGYKVQS 42
          YITVATVIGYK QS
Sbjct: 56 YITVATVIGYKHQS 69



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>PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic protein 2c)|
          (PIP2c) (TMP2C) (RD28-PIP) (Water stress-induced
          tonoplast intrinsic protein) (WSI-TIP)
          Length = 285

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +1

Query: 1  YITVATVIGYKVQS 42
          Y+TV TVIGYK+QS
Sbjct: 51 YVTVLTVIGYKIQS 64



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>PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane intrinsic|
           protein 2a) (PIP2a) (OsPIP2.1)
          Length = 290

 Score = 27.7 bits (60), Expect = 9.7
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +1

Query: 1   YITVATVIGYKVQSAA 48
           YITVATVIGYK Q+ A
Sbjct: 56  YITVATVIGYKHQTDA 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,363,793
Number of Sequences: 219361
Number of extensions: 53101
Number of successful extensions: 212
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 80,573,946
effective HSP length: 0
effective length of database: 80,573,946
effective search space used: 1933774704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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