ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast60h11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475029.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 849 Score = 73.8 bits (37), Expect = 4e-11 Identities = 52/57 (91%) Strand = Plus / Plus Query: 1 tacatcaccgtcgccaccgtcatcggctacaaggtgcagtcggcggccgacccgtgc 57 ||||||||||||||||||||||| || ||||||||||||||| | ||||||| |||| Sbjct: 154 tacatcaccgtcgccaccgtcattgggtacaaggtgcagtcgtccgccgaccagtgc 210
>emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0093G06, complete sequence Length = 127420 Score = 73.8 bits (37), Expect = 4e-11 Identities = 52/57 (91%) Strand = Plus / Minus Query: 1 tacatcaccgtcgccaccgtcatcggctacaaggtgcagtcggcggccgacccgtgc 57 ||||||||||||||||||||||| || ||||||||||||||| | ||||||| |||| Sbjct: 91971 tacatcaccgtcgccaccgtcattgggtacaaggtgcagtcgtccgccgaccagtgc 91915
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 73.8 bits (37), Expect = 4e-11 Identities = 52/57 (91%) Strand = Plus / Minus Query: 1 tacatcaccgtcgccaccgtcatcggctacaaggtgcagtcggcggccgacccgtgc 57 ||||||||||||||||||||||| || ||||||||||||||| | ||||||| |||| Sbjct: 8907662 tacatcaccgtcgccaccgtcattgggtacaaggtgcagtcgtccgccgaccagtgc 8907606
>dbj|AK119661.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B01, full insert sequence Length = 1067 Score = 73.8 bits (37), Expect = 4e-11 Identities = 52/57 (91%) Strand = Plus / Plus Query: 1 tacatcaccgtcgccaccgtcatcggctacaaggtgcagtcggcggccgacccgtgc 57 ||||||||||||||||||||||| || ||||||||||||||| | ||||||| |||| Sbjct: 140 tacatcaccgtcgccaccgtcattgggtacaaggtgcagtcgtccgccgaccagtgc 196
>dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086E18, full insert sequence Length = 1308 Score = 73.8 bits (37), Expect = 4e-11 Identities = 52/57 (91%) Strand = Plus / Plus Query: 1 tacatcaccgtcgccaccgtcatcggctacaaggtgcagtcggcggccgacccgtgc 57 ||||||||||||||||||||||| || ||||||||||||||| | ||||||| |||| Sbjct: 253 tacatcaccgtcgccaccgtcattgggtacaaggtgcagtcgtccgccgaccagtgc 309
>dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B05, full insert sequence Length = 1309 Score = 73.8 bits (37), Expect = 4e-11 Identities = 52/57 (91%) Strand = Plus / Plus Query: 1 tacatcaccgtcgccaccgtcatcggctacaaggtgcagtcggcggccgacccgtgc 57 ||||||||||||||||||||||| || ||||||||||||||| | ||||||| |||| Sbjct: 247 tacatcaccgtcgccaccgtcattgggtacaaggtgcagtcgtccgccgaccagtgc 303
>dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B10, full insert sequence Length = 1296 Score = 73.8 bits (37), Expect = 4e-11 Identities = 52/57 (91%) Strand = Plus / Plus Query: 1 tacatcaccgtcgccaccgtcatcggctacaaggtgcagtcggcggccgacccgtgc 57 ||||||||||||||||||||||| || ||||||||||||||| | ||||||| |||| Sbjct: 241 tacatcaccgtcgccaccgtcattgggtacaaggtgcagtcgtccgccgaccagtgc 297
>gb|AF326493.1|AF326493 Zea mays plasma membrane integral protein ZmPIP2-3 mRNA, complete cds Length = 1156 Score = 50.1 bits (25), Expect = 5e-04 Identities = 31/33 (93%) Strand = Plus / Plus Query: 1 tacatcaccgtcgccaccgtcatcggctacaag 33 ||||||||||| |||||||||||||| |||||| Sbjct: 240 tacatcaccgtggccaccgtcatcgggtacaag 272
>dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin isoform, complete cds Length = 1343 Score = 50.1 bits (25), Expect = 5e-04 Identities = 31/33 (93%) Strand = Plus / Plus Query: 1 tacatcaccgtcgccaccgtcatcggctacaag 33 ||||||||||| |||||||||||||| |||||| Sbjct: 233 tacatcaccgtggccaccgtcatcgggtacaag 265
>dbj|AB219366.1| Hordeum vulgare HvPIP2;1 mRNA for PIP aquaporin, complete cds Length = 1318 Score = 50.1 bits (25), Expect = 5e-04 Identities = 31/33 (93%) Strand = Plus / Plus Query: 1 tacatcaccgtcgccaccgtcatcggctacaag 33 ||||||||||| |||||||||||||| |||||| Sbjct: 292 tacatcaccgtggccaccgtcatcgggtacaag 324
>gb|AF139815.1|AF139815 Triticum aestivum plasma membrane intrinsic protein 2 (PIP2) mRNA, complete cds Length = 1235 Score = 50.1 bits (25), Expect = 5e-04 Identities = 31/33 (93%) Strand = Plus / Plus Query: 1 tacatcaccgtcgccaccgtcatcggctacaag 33 ||||||||||| |||||||||||||| |||||| Sbjct: 208 tacatcaccgtggccaccgtcatcgggtacaag 240
>gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrinsic protein 1 (PIP1) mRNA, complete cds Length = 1283 Score = 50.1 bits (25), Expect = 5e-04 Identities = 31/33 (93%) Strand = Plus / Plus Query: 1 tacatcaccgtcgccaccgtcatcggctacaag 33 ||||||||||| |||||||||||||| |||||| Sbjct: 237 tacatcaccgtggccaccgtcatcgggtacaag 269
>dbj|AB009307.1| Hordeum vulgare HvPIP2;1 mRNA, complete cd Length = 1251 Score = 50.1 bits (25), Expect = 5e-04 Identities = 31/33 (93%) Strand = Plus / Plus Query: 1 tacatcaccgtcgccaccgtcatcggctacaag 33 ||||||||||| |||||||||||||| |||||| Sbjct: 212 tacatcaccgtggccaccgtcatcgggtacaag 244
>dbj|AP004484.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT06I17, TM0017, complete sequence Length = 121127 Score = 50.1 bits (25), Expect = 5e-04 Identities = 28/29 (96%) Strand = Plus / Plus Query: 5 tcaccgtcgccaccgtcatcggctacaag 33 ||||||||||||||||||||||| ||||| Sbjct: 34563 tcaccgtcgccaccgtcatcggccacaag 34591
>gb|BT018182.1| Zea mays clone EL01N0557H10.c mRNA sequence Length = 1215 Score = 42.1 bits (21), Expect = 0.13 Identities = 30/33 (90%) Strand = Plus / Plus Query: 1 tacatcaccgtcgccaccgtcatcggctacaag 33 ||||||||||| |||||||| ||||| |||||| Sbjct: 258 tacatcaccgtggccaccgtgatcgggtacaag 290
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.13 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 caccgtcgccaccgtcatcgg 26 ||||||||||||||||||||| Sbjct: 42007104 caccgtcgccaccgtcatcgg 42007084
>gb|AF326494.1|AF326494 Zea mays plasma membrane integral protein ZmPIP2-4 mRNA, complete cds Length = 1171 Score = 42.1 bits (21), Expect = 0.13 Identities = 30/33 (90%) Strand = Plus / Plus Query: 1 tacatcaccgtcgccaccgtcatcggctacaag 33 ||||||||||| |||||||| ||||| |||||| Sbjct: 250 tacatcaccgtggccaccgtgatcgggtacaag 282
>dbj|AB206102.1| Mimosa pudica pip2;4 mRNA for plasma membrane intrinsic protein 2;4, complete cds Length = 1263 Score = 42.1 bits (21), Expect = 0.13 Identities = 30/33 (90%) Strand = Plus / Plus Query: 1 tacatcaccgtcgccaccgtcatcggctacaag 33 |||||||| ||| ||||||||||||||||||| Sbjct: 203 tacatcactgtcctcaccgtcatcggctacaag 235
>gb|AF314656.1|AF314656 Brassica oleracea aquaporin (PIP3) mRNA, complete cds Length = 909 Score = 42.1 bits (21), Expect = 0.13 Identities = 27/29 (93%) Strand = Plus / Plus Query: 5 tcaccgtcgccaccgtcatcggctacaag 33 ||||||| ||||||||||||||| ||||| Sbjct: 161 tcaccgtagccaccgtcatcggccacaag 189
>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431G06 Length = 140466 Score = 42.1 bits (21), Expect = 0.13 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 caccgtcgccaccgtcatcgg 26 ||||||||||||||||||||| Sbjct: 109181 caccgtcgccaccgtcatcgg 109161
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 0.13 Identities = 24/25 (96%) Strand = Plus / Minus Query: 3 catcaccgtcgccaccgtcatcggc 27 |||||||| |||||||||||||||| Sbjct: 138615 catcaccgacgccaccgtcatcggc 138591 Score = 36.2 bits (18), Expect = 8.0 Identities = 24/26 (92%) Strand = Plus / Minus Query: 12 cgccaccgtcatcggctacaaggtgc 37 ||||| ||||| |||||||||||||| Sbjct: 4278353 cgccaacgtcaccggctacaaggtgc 4278328
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 0.51 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 gtcgccaccgtcatcggcta 29 |||||||||||||||||||| Sbjct: 905394 gtcgccaccgtcatcggcta 905375
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 0.51 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 cgtcgccaccgtcatcggct 28 |||||||||||||||||||| Sbjct: 2945697 cgtcgccaccgtcatcggct 2945716 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 aaggtgcagtcggcggcc 48 |||||||||||||||||| Sbjct: 1269671 aaggtgcagtcggcggcc 1269654
>ref|XM_507210.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1705_C03.130 mRNA Length = 2657 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 cgccaccgtcatcggctac 30 ||||||||||||||||||| Sbjct: 2236 cgccaccgtcatcggctac 2218
>ref|XM_482094.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1044 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 cgccaccgtcatcggctac 30 ||||||||||||||||||| Sbjct: 289 cgccaccgtcatcggctac 307
>ref|XM_507209.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1705_C03.129 mRNA Length = 1047 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 cgccaccgtcatcggctac 30 ||||||||||||||||||| Sbjct: 290 cgccaccgtcatcggctac 308
>emb|AL583923.1|MLEPRTN7 Mycobacterium leprae strain TN complete genome; segment 7/10 Length = 348950 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 23 tcggctacaaggtgcagtcggcg 45 |||||||||||| |||||||||| Sbjct: 295405 tcggctacaaggcgcagtcggcg 295383
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 atcaccgtcgccaccgtca 22 ||||||||||||||||||| Sbjct: 1477594 atcaccgtcgccaccgtca 1477612
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 6 caccgtcgccaccgtcatcggct 28 |||||||||||||||| |||||| Sbjct: 4040252 caccgtcgccaccgtcgtcggct 4040230
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 cgccaccgtcatcggctac 30 ||||||||||||||||||| Sbjct: 17723480 cgccaccgtcatcggctac 17723498
>gb|AF326492.1|AF326492 Zea mays plasma membrane integral protein ZmPIP2-2 mRNA, complete cds Length = 1268 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 atcaccgtcgccaccgtca 22 ||||||||||||||||||| Sbjct: 307 atcaccgtcgccaccgtca 289
>dbj|AP003962.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1705_C03 Length = 118339 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 cgccaccgtcatcggctac 30 ||||||||||||||||||| Sbjct: 108869 cgccaccgtcatcggctac 108887
>dbj|AK120163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031E02, full insert sequence Length = 2657 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 cgccaccgtcatcggctac 30 ||||||||||||||||||| Sbjct: 2236 cgccaccgtcatcggctac 2218
>dbj|AK099366.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051C18, full insert sequence Length = 1044 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 cgccaccgtcatcggctac 30 ||||||||||||||||||| Sbjct: 289 cgccaccgtcatcggctac 307
>dbj|AK061225.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-H02, full insert sequence Length = 1047 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 cgccaccgtcatcggctac 30 ||||||||||||||||||| Sbjct: 290 cgccaccgtcatcggctac 308
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 acatcaccgtcgccaccgt 20 ||||||||||||||||||| Sbjct: 255287 acatcaccgtcgccaccgt 255269
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 6 caccgtcgccaccgtcatcggct 28 |||||||||||||||| |||||| Sbjct: 4040239 caccgtcgccaccgtcgtcggct 4040217
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132682 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 6 caccgtcgccaccgtcatcggct 28 |||||||||||||||| |||||| Sbjct: 76673 caccgtcgccaccgtcgtcggct 76651
>ref|XM_466433.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2010 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 gtcgccaccgtcatcggc 27 |||||||||||||||||| Sbjct: 1824 gtcgccaccgtcatcggc 1807
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 ggctacaaggtgcagtcg 42 |||||||||||||||||| Sbjct: 1503389 ggctacaaggtgcagtcg 1503406
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 36.2 bits (18), Expect = 8.0 Identities = 24/26 (92%) Strand = Plus / Minus Query: 12 cgccaccgtcatcggctacaaggtgc 37 ||||| ||||| |||||||||||||| Sbjct: 4905208 cgccaacgtcaccggctacaaggtgc 4905183
>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16 Length = 349442 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 gccaccgtcatcggctac 30 |||||||||||||||||| Sbjct: 302294 gccaccgtcatcggctac 302277
>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16 Length = 347786 Score = 36.2 bits (18), Expect = 8.0 Identities = 24/26 (92%) Strand = Plus / Minus Query: 12 cgccaccgtcatcggctacaaggtgc 37 |||||||| |||| |||||||||||| Sbjct: 68133 cgccaccggcatctgctacaaggtgc 68108
>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14 Length = 346301 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 gccaccgtcatcggctac 30 |||||||||||||||||| Sbjct: 270802 gccaccgtcatcggctac 270785
>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12 Length = 349028 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 13 gccaccgtcatcggctac 30 |||||||||||||||||| Sbjct: 259377 gccaccgtcatcggctac 259394
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 gtcgccaccgtcatcggc 27 |||||||||||||||||| Sbjct: 2930508 gtcgccaccgtcatcggc 2930491
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 gtcgccaccgtcatcggc 27 |||||||||||||||||| Sbjct: 22628526 gtcgccaccgtcatcggc 22628509
>dbj|AP005644.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056I22 Length = 147728 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 gtcgccaccgtcatcggc 27 |||||||||||||||||| Sbjct: 76337 gtcgccaccgtcatcggc 76320
>dbj|AP002051.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MZF16 Length = 67776 Score = 36.2 bits (18), Expect = 8.0 Identities = 21/22 (95%) Strand = Plus / Minus Query: 3 catcaccgtcgccaccgtcatc 24 ||||||||||||| |||||||| Sbjct: 60648 catcaccgtcgccgccgtcatc 60627
>dbj|AB101584.1| Bifidobacterium bifidum alr gene for alanine racemase, complete cds Length = 1419 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 40 tcggcggccgacccgtgc 57 |||||||||||||||||| Sbjct: 1199 tcggcggccgacccgtgc 1182
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 10 gtcgccaccgtcatcggc 27 |||||||||||||||||| Sbjct: 2095903 gtcgccaccgtcatcggc 2095886 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 240,032 Number of Sequences: 3902068 Number of extensions: 240032 Number of successful extensions: 19069 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18542 Number of HSP's gapped (non-prelim): 527 length of query: 57 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 36 effective length of database: 17,151,101,840 effective search space: 617439666240 effective search space used: 617439666240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)
