ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast60h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY523973.1|AY523972S2 Azospirillum brasilense plasmid 90 MDa,... 38 4.1
2gb|AC125360.4| Mus musculus BAC clone RP23-58E21 from 12, comple... 38 4.1
3emb|BX511225.7| Zebrafish DNA sequence from clone DKEY-28J24 in ... 38 4.1

>gb|AY523973.1|AY523972S2 Azospirillum brasilense plasmid 90 MDa, partial sequence
          Length = 67651

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     ccgccttcaaggaaagcta 26
             |||||||||||||||||||
Sbjct: 31443 ccgccttcaaggaaagcta 31461



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>gb|AC125360.4| Mus musculus BAC clone RP23-58E21 from 12, complete sequence
          Length = 170040

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 73    agcaattctttctgctcac 91
             |||||||||||||||||||
Sbjct: 76410 agcaattctttctgctcac 76428



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>emb|BX511225.7| Zebrafish DNA sequence from clone DKEY-28J24 in linkage group 21,
              complete sequence
          Length = 256675

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 22     agctagaactcgaaacagc 40
              |||||||||||||||||||
Sbjct: 216184 agctagaactcgaaacagc 216202


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 721,352
Number of Sequences: 3902068
Number of extensions: 721352
Number of successful extensions: 48916
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48910
Number of HSP's gapped (non-prelim): 6
length of query: 94
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 73
effective length of database: 17,151,101,840
effective search space: 1252030434320
effective search space used: 1252030434320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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