ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast60h09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 303 bits (153), Expect = 2e-79 Identities = 210/229 (91%) Strand = Plus / Plus Query: 105 cggagatgacgggcaaggcgaagccgaagaagcacacggccaaggagatcgcggcgaaga 164 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 29461078 cggagatgacggggaaggcgaagccgaagaagcacacggcgaaggagatcgcggcgaaga 29461137 Query: 165 tcgacgcggcgacgaccaaccgcggcgggggcaaggcggggcagaaggaccggctcgggc 224 |||||||||||||||| ||| | ||||| || ||||| ||||||||||||||||| |||| Sbjct: 29461138 tcgacgcggcgacgacgaacaggggcggcgggaaggccgggcagaaggaccggctggggc 29461197 Query: 225 aggagaagggcggccacgccaagatggagtgcccgctctgcaaggtgacggcccccgacg 284 |||| |||||||||||||||||| | |||||||| ||||||||| || ||||||||| Sbjct: 29461198 aggacaagggcggccacgccaagctcgagtgccctctctgcaagaccaccgcccccgaca 29461257 Query: 285 tcaagtcgatgcagatccaccacgaggcgcgccaccccaagctcccctt 333 ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 29461258 tcaagtccatgcagatccaccacgaggcgcgccaccccaagctcccctt 29461306 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 gtcgtcgtcggagatgacgg 116 |||||||||||||||||||| Sbjct: 3677600 gtcgtcgtcggagatgacgg 3677581
>dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0621D05 Length = 180250 Score = 303 bits (153), Expect = 2e-79 Identities = 210/229 (91%) Strand = Plus / Plus Query: 105 cggagatgacgggcaaggcgaagccgaagaagcacacggccaaggagatcgcggcgaaga 164 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 171959 cggagatgacggggaaggcgaagccgaagaagcacacggcgaaggagatcgcggcgaaga 172018 Query: 165 tcgacgcggcgacgaccaaccgcggcgggggcaaggcggggcagaaggaccggctcgggc 224 |||||||||||||||| ||| | ||||| || ||||| ||||||||||||||||| |||| Sbjct: 172019 tcgacgcggcgacgacgaacaggggcggcgggaaggccgggcagaaggaccggctggggc 172078 Query: 225 aggagaagggcggccacgccaagatggagtgcccgctctgcaaggtgacggcccccgacg 284 |||| |||||||||||||||||| | |||||||| ||||||||| || ||||||||| Sbjct: 172079 aggacaagggcggccacgccaagctcgagtgccctctctgcaagaccaccgcccccgaca 172138 Query: 285 tcaagtcgatgcagatccaccacgaggcgcgccaccccaagctcccctt 333 ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 172139 tcaagtccatgcagatccaccacgaggcgcgccaccccaagctcccctt 172187
>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0655A07 Length = 172473 Score = 303 bits (153), Expect = 2e-79 Identities = 210/229 (91%) Strand = Plus / Plus Query: 105 cggagatgacgggcaaggcgaagccgaagaagcacacggccaaggagatcgcggcgaaga 164 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 25584 cggagatgacggggaaggcgaagccgaagaagcacacggcgaaggagatcgcggcgaaga 25643 Query: 165 tcgacgcggcgacgaccaaccgcggcgggggcaaggcggggcagaaggaccggctcgggc 224 |||||||||||||||| ||| | ||||| || ||||| ||||||||||||||||| |||| Sbjct: 25644 tcgacgcggcgacgacgaacaggggcggcgggaaggccgggcagaaggaccggctggggc 25703 Query: 225 aggagaagggcggccacgccaagatggagtgcccgctctgcaaggtgacggcccccgacg 284 |||| |||||||||||||||||| | |||||||| ||||||||| || ||||||||| Sbjct: 25704 aggacaagggcggccacgccaagctcgagtgccctctctgcaagaccaccgcccccgaca 25763 Query: 285 tcaagtcgatgcagatccaccacgaggcgcgccaccccaagctcccctt 333 ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 25764 tcaagtccatgcagatccaccacgaggcgcgccaccccaagctcccctt 25812
>dbj|AK100915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133D21, full insert sequence Length = 773 Score = 303 bits (153), Expect = 2e-79 Identities = 210/229 (91%) Strand = Plus / Plus Query: 105 cggagatgacgggcaaggcgaagccgaagaagcacacggccaaggagatcgcggcgaaga 164 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 105 cggagatgacggggaaggcgaagccgaagaagcacacggcgaaggagatcgcggcgaaga 164 Query: 165 tcgacgcggcgacgaccaaccgcggcgggggcaaggcggggcagaaggaccggctcgggc 224 |||||||||||||||| ||| | ||||| || ||||| ||||||||||||||||| |||| Sbjct: 165 tcgacgcggcgacgacgaacaggggcggcgggaaggccgggcagaaggaccggctggggc 224 Query: 225 aggagaagggcggccacgccaagatggagtgcccgctctgcaaggtgacggcccccgacg 284 |||| |||||||||||||||||| | |||||||| ||||||||| || ||||||||| Sbjct: 225 aggacaagggcggccacgccaagctcgagtgccctctctgcaagaccaccgcccccgaca 284 Query: 285 tcaagtcgatgcagatccaccacgaggcgcgccaccccaagctcccctt 333 ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 285 tcaagtccatgcagatccaccacgaggcgcgccaccccaagctcccctt 333
>gb|BT016375.1| Zea mays clone Contig208 mRNA sequence Length = 815 Score = 238 bits (120), Expect = 9e-60 Identities = 198/224 (88%) Strand = Plus / Plus Query: 110 atgacgggcaaggcgaagccgaagaagcacacggccaaggagatcgcggcgaagatcgac 169 |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 67 atgacggggaaggcgaagccgaagaagcacacggcgaaggagatcgccgcgaagatcgac 126 Query: 170 gcggcgacgaccaaccgcggcgggggcaaggcggggcagaaggaccggctcgggcaggag 229 ||||||||||| ||||| ||||| |||||||| |||||| ||||||||| |||||||| Sbjct: 127 gcggcgacgacgaaccggggcggcggcaaggccgggcaggcggaccggctggggcaggac 186 Query: 230 aagggcggccacgccaagatggagtgcccgctctgcaaggtgacggcccccgacgtcaag 289 |||||||| || || ||| ||| ||||||||||||| |||| |||||| ||||| Sbjct: 187 aagggcgggcatgcgaagctggcgtgcccgctctgccgcaccccggcgcccgacatcaag 246 Query: 290 tcgatgcagatccaccacgaggcgcgccaccccaagctcccctt 333 || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 tccatgcagatccaccacgaggcgcgccaccccaagctcccctt 290
>gb|AY105672.1| Zea mays PCO122536 mRNA sequence Length = 842 Score = 238 bits (120), Expect = 9e-60 Identities = 198/224 (88%) Strand = Plus / Plus Query: 110 atgacgggcaaggcgaagccgaagaagcacacggccaaggagatcgcggcgaagatcgac 169 |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 79 atgacggggaaggcgaagccgaagaagcacacggcgaaggagatcgccgcgaagatcgac 138 Query: 170 gcggcgacgaccaaccgcggcgggggcaaggcggggcagaaggaccggctcgggcaggag 229 ||||||||||| ||||| ||||| |||||||| |||||| ||||||||| |||||||| Sbjct: 139 gcggcgacgacgaaccggggcggcggcaaggccgggcaggcggaccggctggggcaggac 198 Query: 230 aagggcggccacgccaagatggagtgcccgctctgcaaggtgacggcccccgacgtcaag 289 |||||||| || || ||| ||| ||||||||||||| |||| |||||| ||||| Sbjct: 199 aagggcgggcatgcgaagctggcgtgcccgctctgccgcaccccggcgcccgacatcaag 258 Query: 290 tcgatgcagatccaccacgaggcgcgccaccccaagctcccctt 333 || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 259 tccatgcagatccaccacgaggcgcgccaccccaagctcccctt 302
>gb|AY106117.1| Zea mays PCO122535 mRNA sequence Length = 764 Score = 216 bits (109), Expect = 3e-53 Identities = 193/221 (87%) Strand = Plus / Plus Query: 110 atgacgggcaaggcgaagccgaagaagcacacggccaaggagatcgcggcgaagatcgac 169 |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 80 atgacggggaaggcgaagccgaagaagcacacggcgaaggagatcgccgcgaagatcgac 139 Query: 170 gcggcgacgaccaaccgcggcgggggcaaggcggggcagaaggaccggctcgggcaggag 229 ||||||||||| ||||| ||||| ||||||| |||||| ||| ||||| |||||||| Sbjct: 140 gcggcgacgacgaaccggggcggcggcaaggtcgggcaggcggatcggctagggcaggac 199 Query: 230 aagggcggccacgccaagatggagtgcccgctctgcaaggtgacggcccccgacgtcaag 289 |||||||| ||||| ||| ||| ||||||||||||| |||| |||||| ||||| Sbjct: 200 aagggcgggcacgcgaagctggcgtgcccgctctgccgcaccccggcgcccgacatcaag 259 Query: 290 tcgatgcagatccaccacgaggcgcgccaccccaagctccc 330 || |||||||||||||||||||||||||| ||||||||||| Sbjct: 260 tccatgcagatccaccacgaggcgcgccatcccaagctccc 300
>gb|BT017513.1| Zea mays clone EL01N0419A08.c mRNA sequence Length = 817 Score = 184 bits (93), Expect = 1e-43 Identities = 191/224 (85%) Strand = Plus / Plus Query: 110 atgacgggcaaggcgaagccgaagaagcacacggccaaggagatcgcggcgaagatcgac 169 |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||| Sbjct: 57 atgacggggaaggcgaagccgaagaagcacacggcgaaggagatcgccgcgaatatcgac 116 Query: 170 gcggcgacgaccaaccgcggcgggggcaaggcggggcagaaggaccggctcgggcaggag 229 ||||||||||| ||||| ||||| |||||||| |||||| ||||||||| || | | Sbjct: 117 gcggcgacgacgaaccggggcggcggcaaggccgggcaggcggaccggctgggtcgtnac 176 Query: 230 aagggcggccacgccaagatggagtgcccgctctgcaaggtgacggcccccgacgtcaag 289 | |||||| || || ||| ||| ||||||||||||| ||| |||||| ||||| Sbjct: 177 atgggcgggcatgcgaagctggcgtgcccgctctgcctcaccccggggcccgacatcaag 236 Query: 290 tcgatgcagatccaccacgaggcgcgccaccccaagctcccctt 333 || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 237 tccatgcagatccaccacgaggcgcgccaccccaagctcccctt 280
>gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete sequence Length = 158384 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 108 agatgacgggcaaggcgaagccgaagaagcacacggccaaggagatc 154 |||||||||| || |||||||| |||||||||||||| ||||||||| Sbjct: 112093 agatgacgggaaaagcgaagccaaagaagcacacggcgaaggagatc 112047
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Minus Query: 152 atcgcggcgaagatcgacgcggcg 175 |||||||||||||||||||||||| Sbjct: 1472212 atcgcggcgaagatcgacgcggcg 1472189
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Minus Query: 152 atcgcggcgaagatcgacgcggcg 175 |||||||||||||||||||||||| Sbjct: 2702708 atcgcggcgaagatcgacgcggcg 2702685
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 152 atcgcggcgaagatcgacgcggcg 175 |||||||||||||||||||||||| Sbjct: 1680744 atcgcggcgaagatcgacgcggcg 1680767
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 152 atcgcggcgaagatcgacgcggcg 175 |||||||||||||||||||||||| Sbjct: 2440678 atcgcggcgaagatcgacgcggcg 2440701
>dbj|AB023580.1| Blastocystis hominis hsp70 mRNA, complete cds Length = 2021 Score = 44.1 bits (22), Expect = 0.28 Identities = 28/30 (93%) Strand = Plus / Plus Query: 146 aaggagatcgcggcgaagatcgacgcggcg 175 |||| ||||| ||||||||||||||||||| Sbjct: 1721 aaggcgatcgaggcgaagatcgacgcggcg 1750
>ref|NM_195416.1| Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OSJNBb0091B12.5), mRNA Length = 5379 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 152 atcgcggcgaagatcgacgcggcgacgac 180 ||||||| |||| |||||||||||||||| Sbjct: 2580 atcgcggggaagttcgacgcggcgacgac 2552
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 150 agatcgcggcgaagatcgacgcggc 174 ||||||| ||||||||||||||||| Sbjct: 2232130 agatcgccgcgaagatcgacgcggc 2232106
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 acggccaaggagatcgcggcg 160 ||||||||||||||||||||| Sbjct: 187490 acggccaaggagatcgcggcg 187510
>gb|AY961917.1| Picea abies C2H2 type zinc finger family protein mRNA, complete cds Length = 630 Score = 42.1 bits (21), Expect = 1.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 110 atgacgggcaaggcgaagccgaagaagcacacggccaagga 150 |||||||| ||||| ||||| ||||||||||| || ||||| Sbjct: 137 atgacgggtaaggcaaagccaaagaagcacacagctaagga 177
>emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome; segment 1/13 Length = 341957 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 acggccaaggagatcgcggcg 160 ||||||||||||||||||||| Sbjct: 187322 acggccaaggagatcgcggcg 187342
>emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 1/14 Length = 343050 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 acggccaaggagatcgcggcg 160 ||||||||||||||||||||| Sbjct: 187512 acggccaaggagatcgcggcg 187532
>dbj|AB013500.1| GB virus C gene for polyprotein, complete cds, isolate: HGV-GA128 Length = 9231 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 gcaggagaagggcggccacgc 243 ||||||||||||||||||||| Sbjct: 940 gcaggagaagggcggccacgc 920
>gb|AC093178.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0091B12, complete sequence Length = 137568 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 152 atcgcggcgaagatcgacgcggcgacgac 180 ||||||| |||| |||||||||||||||| Sbjct: 47805 atcgcggggaagttcgacgcggcgacgac 47833
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 152 atcgcggcgaagatcgacgcggcgacgac 180 ||||||| |||| |||||||||||||||| Sbjct: 6844778 atcgcggggaagttcgacgcggcgacgac 6844806
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 152 atcgcggcgaagatcgacgcggcgacgac 180 ||||||| |||| |||||||||||||||| Sbjct: 6848064 atcgcggggaagttcgacgcggcgacgac 6848092
>dbj|AB009025.1| Hepatitis G virus genomic RNA for polyprotein, 5'UTR to E1 region, partial cds Length = 995 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 gcaggagaagggcggccacgc 243 ||||||||||||||||||||| Sbjct: 940 gcaggagaagggcggccacgc 920
>gb|AF455107.1| Uncultured bacterium clone lime9 chitinase gene, partial cds Length = 416 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 cgcggcgaagatcgacgcgg 173 |||||||||||||||||||| Sbjct: 159 cgcggcgaagatcgacgcgg 178
>emb|AL358593.22| Human DNA sequence from clone RP11-473A10 on chromosome 1 Contains the 3' end of the gene for a novel protein (KIAA1626, FLJ34701, FLJ44929, FLJ10521) and the 5' end of a novel gene, complete sequence Length = 142454 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ggggcaaggcggggcagaag 211 |||||||||||||||||||| Sbjct: 95126 ggggcaaggcggggcagaag 95107
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 tcgcggcgaagatcgacgcg 172 |||||||||||||||||||| Sbjct: 4043066 tcgcggcgaagatcgacgcg 4043085
>gb|AF323675.1|AF323675 Bradyrhizobium japonicum Aspk (lysC) and EnzymeI-Ntr (ptsP) genes, complete cds Length = 4091 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 cgaagatcgacgcggcgacg 178 |||||||||||||||||||| Sbjct: 1042 cgaagatcgacgcggcgacg 1023
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 ggagtgcccgctctgcaagg 269 |||||||||||||||||||| Sbjct: 78850 ggagtgcccgctctgcaagg 78869
>dbj|AP002854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0014B15 Length = 158821 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 gtcgtcgtcggagatgacgg 116 |||||||||||||||||||| Sbjct: 71828 gtcgtcgtcggagatgacgg 71809
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 cgaagatcgacgcggcgacg 178 |||||||||||||||||||| Sbjct: 212081 cgaagatcgacgcggcgacg 212062
>gb|AF106038.1|AF106038 Raja radiata mitochondrion, complete genome Length = 16783 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 agcaagtagggttaggagga 60 |||||||||||||||||||| Sbjct: 15096 agcaagtagggttaggagga 15077 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,760,521 Number of Sequences: 3902068 Number of extensions: 1760521 Number of successful extensions: 33807 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33006 Number of HSP's gapped (non-prelim): 801 length of query: 333 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 311 effective length of database: 17,147,199,772 effective search space: 5332779129092 effective search space used: 5332779129092 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
