ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast60h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188159.2| Oryza sativa (japonica cultivar-group), mRNA 323 2e-85
2ref|XM_506285.1| PREDICTED Oryza sativa (japonica cultivar-group... 323 2e-85
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 323 2e-85
4dbj|AP005247.3| Oryza sativa (japonica cultivar-group) genomic D... 323 2e-85
5dbj|AK120684.1| Oryza sativa (japonica cultivar-group) cDNA clon... 323 2e-85
6dbj|AK104173.1| Oryza sativa (japonica cultivar-group) cDNA clon... 323 2e-85
7dbj|AK104124.1| Oryza sativa (japonica cultivar-group) cDNA clon... 323 2e-85
8dbj|AK061478.1| Oryza sativa (japonica cultivar-group) cDNA clon... 323 2e-85
9dbj|AK060411.1| Oryza sativa (japonica cultivar-group) cDNA clon... 323 2e-85
10ref|NM_197354.1| Oryza sativa (japonica cultivar-group) unknown ... 163 5e-37
11gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 gen... 163 5e-37
12dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 163 5e-37
13dbj|AK103655.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 5e-37
14dbj|AK059344.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 5e-37
15gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 163 5e-37
16gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 46 0.080
17gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 46 0.080
18emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 46 0.080
19emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segmen... 46 0.080
20ref|NM_180666.2| Arabidopsis thaliana calcium ion binding AT3G10... 42 1.3
21ref|NM_111865.4| Arabidopsis thaliana calcium ion binding AT3G10... 42 1.3
22ref|NM_180667.2| Arabidopsis thaliana calcium ion binding AT3G10... 42 1.3
23ref|NM_001035591.1| Arabidopsis thaliana calcium ion binding AT3... 42 1.3
24gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 1.3
25gb|BT015172.1| Arabidopsis thaliana At3g10300 gene, complete cds 42 1.3
26gb|AC009400.4|ATAC009400 Arabidopsis thaliana chromosome III BAC... 42 1.3
27gb|AE012538.1| Xanthomonas campestris pv. campestris str. ATCC 3... 42 1.3
28gb|AY062498.1| Arabidopsis thaliana Unknown protein (At3g10300; ... 42 1.3
29gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 42 1.3
30ref|NM_198020.1| Mus musculus TRM1 tRNA methyltransferase 1 homo... 40 4.9
31ref|XM_755142.1| Ustilago maydis 521 hypothetical protein (UM040... 40 4.9
32gb|AC106820.4| Homo sapiens chromosome 16 clone RP11-715J22, com... 40 4.9
33emb|X58868.1|HEPVGH Pseudorabies virus glycoprotein H gene 40 4.9
34emb|BX927157.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 4.9
35gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 4.9
36gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequ... 40 4.9
37dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 40 4.9
38dbj|AK155251.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 4.9
39dbj|AK171002.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 4.9
40tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome 40 4.9
41dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
42dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 4.9
43dbj|AP005688.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
44emb|X61696.1|PRVGHG Pseudorabies virus gH gene for glycoprotein H 40 4.9
45gb|BC027404.1| Mus musculus TRM1 tRNA methyltransferase 1 homolo... 40 4.9
46gb|M61196.1|SH1GPGH Pseudorabies virus glycoprotein gH (gH) gene... 40 4.9 
>ref|NM_188159.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1080

 Score =  323 bits (163), Expect = 2e-85
 Identities = 238/263 (90%)
 Strand = Plus / Plus

                                                                       
Query: 105 ttccgcgtgtacgtgggctacgactcccgcgaggacatcgcataccgcgtgtgccggcgc 164
           |||||||||| ||| || |||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 204 ttccgcgtgttcgtcgggtacgactcgcgcgaggacatcgcgtaccgcgtgtgccggcgc 263

                                                                       
Query: 165 tcactgctgcggcgctcctccgtgccgctggaggtcatcccgatcgtccagcaggagctc 224
           || ||||||| |||||||||||||||| |||  || ||||||||||| ||||||||||||
Sbjct: 264 tccctgctgcagcgctcctccgtgccggtggccgtgatcccgatcgtgcagcaggagctc 323

                                                                       
Query: 225 cgcgaggccgggctgtactggcgggagcgcgggccgacggagagcacggagttctccttc 284
           ||    || |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 324 cggtctgcggggctgtactggcgggagcgcgggcccacggagagcaccgagttctccttc 383

                                                                       
Query: 285 acccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctcttcgtggactgc 344
           ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 384 acccgcttcctgacgccccacctggccggctaccgcggctgggcgctcttcgtcgactgc 443

                                  
Query: 345 gacttcctcttcgtggcggacgt 367
           |||||||||||||| || |||||
Sbjct: 444 gacttcctcttcgtcgccgacgt 466
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>ref|XM_506285.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0077F02.110
           mRNA
          Length = 1092

 Score =  323 bits (163), Expect = 2e-85
 Identities = 238/263 (90%)
 Strand = Plus / Plus

                                                                       
Query: 105 ttccgcgtgtacgtgggctacgactcccgcgaggacatcgcataccgcgtgtgccggcgc 164
           |||||||||| ||| || |||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 190 ttccgcgtgttcgtcgggtacgactcgcgcgaggacatcgcgtaccgcgtgtgccggcgc 249

                                                                       
Query: 165 tcactgctgcggcgctcctccgtgccgctggaggtcatcccgatcgtccagcaggagctc 224
           || ||||||| |||||||||||||||| |||  || ||||||||||| ||||||||||||
Sbjct: 250 tccctgctgcagcgctcctccgtgccggtggccgtgatcccgatcgtgcagcaggagctc 309

                                                                       
Query: 225 cgcgaggccgggctgtactggcgggagcgcgggccgacggagagcacggagttctccttc 284
           ||    || |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 310 cggtctgcggggctgtactggcgggagcgcgggcccacggagagcaccgagttctccttc 369

                                                                       
Query: 285 acccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctcttcgtggactgc 344
           ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 370 acccgcttcctgacgccccacctggccggctaccgcggctgggcgctcttcgtcgactgc 429

                                  
Query: 345 gacttcctcttcgtggcggacgt 367
           |||||||||||||| || |||||
Sbjct: 430 gacttcctcttcgtcgccgacgt 452
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  323 bits (163), Expect = 2e-85
 Identities = 238/263 (90%)
 Strand = Plus / Minus

                                                                            
Query: 105      ttccgcgtgtacgtgggctacgactcccgcgaggacatcgcataccgcgtgtgccggcgc 164
                |||||||||| ||| || |||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 12984858 ttccgcgtgttcgtcgggtacgactcgcgcgaggacatcgcgtaccgcgtgtgccggcgc 12984799

                                                                            
Query: 165      tcactgctgcggcgctcctccgtgccgctggaggtcatcccgatcgtccagcaggagctc 224
                || ||||||| |||||||||||||||| |||  || ||||||||||| ||||||||||||
Sbjct: 12984798 tccctgctgcagcgctcctccgtgccggtggccgtgatcccgatcgtgcagcaggagctc 12984739

                                                                            
Query: 225      cgcgaggccgggctgtactggcgggagcgcgggccgacggagagcacggagttctccttc 284
                ||    || |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 12984738 cggtctgcggggctgtactggcgggagcgcgggcccacggagagcaccgagttctccttc 12984679

                                                                            
Query: 285      acccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctcttcgtggactgc 344
                ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 12984678 acccgcttcctgacgccccacctggccggctaccgcggctgggcgctcttcgtcgactgc 12984619

                                       
Query: 345      gacttcctcttcgtggcggacgt 367
                |||||||||||||| || |||||
Sbjct: 12984618 gacttcctcttcgtcgccgacgt 12984596
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>dbj|AP005247.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0077F02
          Length = 172442

 Score =  323 bits (163), Expect = 2e-85
 Identities = 238/263 (90%)
 Strand = Plus / Minus

                                                                         
Query: 105   ttccgcgtgtacgtgggctacgactcccgcgaggacatcgcataccgcgtgtgccggcgc 164
             |||||||||| ||| || |||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 59155 ttccgcgtgttcgtcgggtacgactcgcgcgaggacatcgcgtaccgcgtgtgccggcgc 59096

                                                                         
Query: 165   tcactgctgcggcgctcctccgtgccgctggaggtcatcccgatcgtccagcaggagctc 224
             || ||||||| |||||||||||||||| |||  || ||||||||||| ||||||||||||
Sbjct: 59095 tccctgctgcagcgctcctccgtgccggtggccgtgatcccgatcgtgcagcaggagctc 59036

                                                                         
Query: 225   cgcgaggccgggctgtactggcgggagcgcgggccgacggagagcacggagttctccttc 284
             ||    || |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 59035 cggtctgcggggctgtactggcgggagcgcgggcccacggagagcaccgagttctccttc 58976

                                                                         
Query: 285   acccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctcttcgtggactgc 344
             ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 58975 acccgcttcctgacgccccacctggccggctaccgcggctgggcgctcttcgtcgactgc 58916

                                    
Query: 345   gacttcctcttcgtggcggacgt 367
             |||||||||||||| || |||||
Sbjct: 58915 gacttcctcttcgtcgccgacgt 58893
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>dbj|AK120684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164D19, full
           insert sequence
          Length = 1040

 Score =  323 bits (163), Expect = 2e-85
 Identities = 238/263 (90%)
 Strand = Plus / Plus

                                                                       
Query: 105 ttccgcgtgtacgtgggctacgactcccgcgaggacatcgcataccgcgtgtgccggcgc 164
           |||||||||| ||| || |||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 200 ttccgcgtgttcgtcgggtacgactcgcgcgaggacatcgcgtaccgcgtgtgccggcgc 259

                                                                       
Query: 165 tcactgctgcggcgctcctccgtgccgctggaggtcatcccgatcgtccagcaggagctc 224
           || ||||||| |||||||||||||||| |||  || ||||||||||| ||||||||||||
Sbjct: 260 tccctgctgcagcgctcctccgtgccggtggccgtgatcccgatcgtgcagcaggagctc 319

                                                                       
Query: 225 cgcgaggccgggctgtactggcgggagcgcgggccgacggagagcacggagttctccttc 284
           ||    || |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 320 cggtctgcggggctgtactggcgggagcgcgggcccacggagagcaccgagttctccttc 379

                                                                       
Query: 285 acccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctcttcgtggactgc 344
           ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 380 acccgcttcctgacgccccacctggccggctaccgcggctgggcgctcttcgtcgactgc 439

                                  
Query: 345 gacttcctcttcgtggcggacgt 367
           |||||||||||||| || |||||
Sbjct: 440 gacttcctcttcgtcgccgacgt 462
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>dbj|AK104173.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-B12, full
           insert sequence
          Length = 966

 Score =  323 bits (163), Expect = 2e-85
 Identities = 238/263 (90%)
 Strand = Plus / Plus

                                                                       
Query: 105 ttccgcgtgtacgtgggctacgactcccgcgaggacatcgcataccgcgtgtgccggcgc 164
           |||||||||| ||| || |||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 64  ttccgcgtgttcgtcgggtacgactcgcgcgaggacatcgcgtaccgcgtgtgccggcgc 123

                                                                       
Query: 165 tcactgctgcggcgctcctccgtgccgctggaggtcatcccgatcgtccagcaggagctc 224
           || ||||||| |||||||||||||||| |||  || ||||||||||| ||||||||||||
Sbjct: 124 tccctgctgcagcgctcctccgtgccggtggccgtgatcccgatcgtgcagcaggagctc 183

                                                                       
Query: 225 cgcgaggccgggctgtactggcgggagcgcgggccgacggagagcacggagttctccttc 284
           ||    || |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 184 cggtctgcggggctgtactggcgggagcgcgggcccacggagagcaccgagttctccttc 243

                                                                       
Query: 285 acccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctcttcgtggactgc 344
           ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 244 acccgcttcctgacgccccacctggccggctaccgcggctgggcgctcttcgtcgactgc 303

                                  
Query: 345 gacttcctcttcgtggcggacgt 367
           |||||||||||||| || |||||
Sbjct: 304 gacttcctcttcgtcgccgacgt 326
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>dbj|AK104124.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-D05, full
           insert sequence
          Length = 1080

 Score =  323 bits (163), Expect = 2e-85
 Identities = 238/263 (90%)
 Strand = Plus / Plus

                                                                       
Query: 105 ttccgcgtgtacgtgggctacgactcccgcgaggacatcgcataccgcgtgtgccggcgc 164
           |||||||||| ||| || |||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 204 ttccgcgtgttcgtcgggtacgactcgcgcgaggacatcgcgtaccgcgtgtgccggcgc 263

                                                                       
Query: 165 tcactgctgcggcgctcctccgtgccgctggaggtcatcccgatcgtccagcaggagctc 224
           || ||||||| |||||||||||||||| |||  || ||||||||||| ||||||||||||
Sbjct: 264 tccctgctgcagcgctcctccgtgccggtggccgtgatcccgatcgtgcagcaggagctc 323

                                                                       
Query: 225 cgcgaggccgggctgtactggcgggagcgcgggccgacggagagcacggagttctccttc 284
           ||    || |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 324 cggtctgcggggctgtactggcgggagcgcgggcccacggagagcaccgagttctccttc 383

                                                                       
Query: 285 acccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctcttcgtggactgc 344
           ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 384 acccgcttcctgacgccccacctggccggctaccgcggctgggcgctcttcgtcgactgc 443

                                  
Query: 345 gacttcctcttcgtggcggacgt 367
           |||||||||||||| || |||||
Sbjct: 444 gacttcctcttcgtcgccgacgt 466
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>dbj|AK061478.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G06, full
           insert sequence
          Length = 1092

 Score =  323 bits (163), Expect = 2e-85
 Identities = 238/263 (90%)
 Strand = Plus / Plus

                                                                       
Query: 105 ttccgcgtgtacgtgggctacgactcccgcgaggacatcgcataccgcgtgtgccggcgc 164
           |||||||||| ||| || |||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 190 ttccgcgtgttcgtcgggtacgactcgcgcgaggacatcgcgtaccgcgtgtgccggcgc 249

                                                                       
Query: 165 tcactgctgcggcgctcctccgtgccgctggaggtcatcccgatcgtccagcaggagctc 224
           || ||||||| |||||||||||||||| |||  || ||||||||||| ||||||||||||
Sbjct: 250 tccctgctgcagcgctcctccgtgccggtggccgtgatcccgatcgtgcagcaggagctc 309

                                                                       
Query: 225 cgcgaggccgggctgtactggcgggagcgcgggccgacggagagcacggagttctccttc 284
           ||    || |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 310 cggtctgcggggctgtactggcgggagcgcgggcccacggagagcaccgagttctccttc 369

                                                                       
Query: 285 acccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctcttcgtggactgc 344
           ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 370 acccgcttcctgacgccccacctggccggctaccgcggctgggcgctcttcgtcgactgc 429

                                  
Query: 345 gacttcctcttcgtggcggacgt 367
           |||||||||||||| || |||||
Sbjct: 430 gacttcctcttcgtcgccgacgt 452
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>dbj|AK060411.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-E03, full
           insert sequence
          Length = 954

 Score =  323 bits (163), Expect = 2e-85
 Identities = 238/263 (90%)
 Strand = Plus / Plus

                                                                       
Query: 105 ttccgcgtgtacgtgggctacgactcccgcgaggacatcgcataccgcgtgtgccggcgc 164
           |||||||||| ||| || |||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 70  ttccgcgtgttcgtcgggtacgactcgcgcgaggacatcgcgtaccgcgtgtgccggcgc 129

                                                                       
Query: 165 tcactgctgcggcgctcctccgtgccgctggaggtcatcccgatcgtccagcaggagctc 224
           || ||||||| |||||||||||||||| |||  || ||||||||||| ||||||||||||
Sbjct: 130 tccctgctgcagcgctcctccgtgccggtggccgtgatcccgatcgtgcagcaggagctc 189

                                                                       
Query: 225 cgcgaggccgggctgtactggcgggagcgcgggccgacggagagcacggagttctccttc 284
           ||    || |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 190 cggtctgcggggctgtactggcgggagcgcgggcccacggagagcaccgagttctccttc 249

                                                                       
Query: 285 acccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctcttcgtggactgc 344
           ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 250 acccgcttcctgacgccccacctggccggctaccgcggctgggcgctcttcgtcgactgc 309

                                  
Query: 345 gacttcctcttcgtggcggacgt 367
           |||||||||||||| || |||||
Sbjct: 310 gacttcctcttcgtcgccgacgt 332
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>ref|NM_197354.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0076F20.4), mRNA
          Length = 1255

 Score =  163 bits (82), Expect = 5e-37
 Identities = 127/142 (89%)
 Strand = Plus / Plus

                                                                       
Query: 213 cagcaggagctccgcgaggccgggctgtactggcgggagcgcgggccgacggagagcacg 272
           |||| ||| ||||||| ||| ||||| |||||||||||||| ||||| || |||||||| 
Sbjct: 246 cagccggatctccgcgcggcggggctctactggcgggagcgggggcccaccgagagcacc 305

                                                                       
Query: 273 gagttctccttcacccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctc 332
           ||||||||||||||||||||||| || ||  ||||||||||||||||||| |||||||||
Sbjct: 306 gagttctccttcacccgcttcctcacaccctacctcgccggctaccgcggctgggcgctc 365

                                 
Query: 333 ttcgtggactgcgacttcctct 354
           ||||| ||||||||||||||||
Sbjct: 366 ttcgtcgactgcgacttcctct 387
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>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete
             sequence
          Length = 165394

 Score =  163 bits (82), Expect = 5e-37
 Identities = 127/142 (89%)
 Strand = Plus / Minus

                                                                         
Query: 213   cagcaggagctccgcgaggccgggctgtactggcgggagcgcgggccgacggagagcacg 272
             |||| ||| ||||||| ||| ||||| |||||||||||||| ||||| || |||||||| 
Sbjct: 25410 cagccggatctccgcgcggcggggctctactggcgggagcgggggcccaccgagagcacc 25351

                                                                         
Query: 273   gagttctccttcacccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctc 332
             ||||||||||||||||||||||| || ||  ||||||||||||||||||| |||||||||
Sbjct: 25350 gagttctccttcacccgcttcctcacaccctacctcgccggctaccgcggctgggcgctc 25291

                                   
Query: 333   ttcgtggactgcgacttcctct 354
             ||||| ||||||||||||||||
Sbjct: 25290 ttcgtcgactgcgacttcctct 25269
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  163 bits (82), Expect = 5e-37
 Identities = 127/142 (89%)
 Strand = Plus / Minus

                                                                            
Query: 213      cagcaggagctccgcgaggccgggctgtactggcgggagcgcgggccgacggagagcacg 272
                |||| ||| ||||||| ||| ||||| |||||||||||||| ||||| || |||||||| 
Sbjct: 19397544 cagccggatctccgcgcggcggggctctactggcgggagcgggggcccaccgagagcacc 19397485

                                                                            
Query: 273      gagttctccttcacccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctc 332
                ||||||||||||||||||||||| || ||  ||||||||||||||||||| |||||||||
Sbjct: 19397484 gagttctccttcacccgcttcctcacaccctacctcgccggctaccgcggctgggcgctc 19397425

                                      
Query: 333      ttcgtggactgcgacttcctct 354
                ||||| ||||||||||||||||
Sbjct: 19397424 ttcgtcgactgcgacttcctct 19397403
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>dbj|AK103655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135F01, full
           insert sequence
          Length = 1110

 Score =  163 bits (82), Expect = 5e-37
 Identities = 127/142 (89%)
 Strand = Plus / Plus

                                                                       
Query: 213 cagcaggagctccgcgaggccgggctgtactggcgggagcgcgggccgacggagagcacg 272
           |||| ||| ||||||| ||| ||||| |||||||||||||| ||||| || |||||||| 
Sbjct: 257 cagccggatctccgcgcggcggggctctactggcgggagcgggggcccaccgagagcacc 316

                                                                       
Query: 273 gagttctccttcacccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctc 332
           ||||||||||||||||||||||| || ||  ||||||||||||||||||| |||||||||
Sbjct: 317 gagttctccttcacccgcttcctcacaccctacctcgccggctaccgcggctgggcgctc 376

                                 
Query: 333 ttcgtggactgcgacttcctct 354
           ||||| ||||||||||||||||
Sbjct: 377 ttcgtcgactgcgacttcctct 398
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>dbj|AK059344.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-B09, full
           insert sequence
          Length = 1035

 Score =  163 bits (82), Expect = 5e-37
 Identities = 127/142 (89%)
 Strand = Plus / Plus

                                                                       
Query: 213 cagcaggagctccgcgaggccgggctgtactggcgggagcgcgggccgacggagagcacg 272
           |||| ||| ||||||| ||| ||||| |||||||||||||| ||||| || |||||||| 
Sbjct: 188 cagccggatctccgcgcggcggggctctactggcgggagcgggggcccaccgagagcacc 247

                                                                       
Query: 273 gagttctccttcacccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctc 332
           ||||||||||||||||||||||| || ||  ||||||||||||||||||| |||||||||
Sbjct: 248 gagttctccttcacccgcttcctcacaccctacctcgccggctaccgcggctgggcgctc 307

                                 
Query: 333 ttcgtggactgcgacttcctct 354
           ||||| ||||||||||||||||
Sbjct: 308 ttcgtcgactgcgacttcctct 329
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  163 bits (82), Expect = 5e-37
 Identities = 127/142 (89%)
 Strand = Plus / Minus

                                                                            
Query: 213      cagcaggagctccgcgaggccgggctgtactggcgggagcgcgggccgacggagagcacg 272
                |||| ||| ||||||| ||| ||||| |||||||||||||| ||||| || |||||||| 
Sbjct: 19408820 cagccggatctccgcgcggcggggctctactggcgggagcgggggcccaccgagagcacc 19408761

                                                                            
Query: 273      gagttctccttcacccgcttcctgacgccacacctcgccggctaccgcgggtgggcgctc 332
                ||||||||||||||||||||||| || ||  ||||||||||||||||||| |||||||||
Sbjct: 19408760 gagttctccttcacccgcttcctcacaccctacctcgccggctaccgcggctgggcgctc 19408701

                                      
Query: 333      ttcgtggactgcgacttcctct 354
                ||||| ||||||||||||||||
Sbjct: 19408700 ttcgtcgactgcgacttcctct 19408679
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 26      cgcgtccgcgccgaaaatgtcgc 48
               |||||||||||||||||||||||
Sbjct: 2981916 cgcgtccgcgccgaaaatgtcgc 2981938
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 26     cgcgtccgcgccgaaaatgtcgc 48
              |||||||||||||||||||||||
Sbjct: 109358 cgcgtccgcgccgaaaatgtcgc 109380
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 26      cgcgtccgcgccgaaaatgtcgc 48
               |||||||||||||||||||||||
Sbjct: 3954899 cgcgtccgcgccgaaaatgtcgc 3954921
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>emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segment 1/7
          Length = 348764

 Score = 46.1 bits (23), Expect = 0.080
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 265    agagcacggagttctccttcacccgcttcct 295
              |||||||||  ||||||||||||||||||||
Sbjct: 183635 agagcacggccttctccttcacccgcttcct 183665
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>ref|NM_180666.2| Arabidopsis thaliana calcium ion binding AT3G10300 transcript
           variant AT3G10300.1 mRNA, complete cds
          Length = 1055

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 167 actgctgcggcgctcctccgt 187
           |||||||||||||||||||||
Sbjct: 496 actgctgcggcgctcctccgt 476



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 167 actgctgcggcgctcctccgt 187
           |||||||||||||||||||||
Sbjct: 457 actgctgcggcgctcctccgt 437
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>ref|NM_111865.4| Arabidopsis thaliana calcium ion binding AT3G10300 transcript
           variant AT3G10300.3 mRNA, complete cds
          Length = 1258

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 167 actgctgcggcgctcctccgt 187
           |||||||||||||||||||||
Sbjct: 515 actgctgcggcgctcctccgt 495



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 167 actgctgcggcgctcctccgt 187
           |||||||||||||||||||||
Sbjct: 476 actgctgcggcgctcctccgt 456
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>ref|NM_180667.2| Arabidopsis thaliana calcium ion binding AT3G10300 transcript
           variant AT3G10300.2 mRNA, complete cds
          Length = 1471

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 167 actgctgcggcgctcctccgt 187
           |||||||||||||||||||||
Sbjct: 515 actgctgcggcgctcctccgt 495



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 167 actgctgcggcgctcctccgt 187
           |||||||||||||||||||||
Sbjct: 476 actgctgcggcgctcctccgt 456
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>ref|NM_001035591.1| Arabidopsis thaliana calcium ion binding AT3G10300 transcript
           variant AT3G10300.4 mRNA, complete cds
          Length = 1272

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 167 actgctgcggcgctcctccgt 187
           |||||||||||||||||||||
Sbjct: 515 actgctgcggcgctcctccgt 495



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 167 actgctgcggcgctcctccgt 187
           |||||||||||||||||||||
Sbjct: 476 actgctgcggcgctcctccgt 456
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 199    tcatcccgatcgtccagcagg 219
              |||||||||||||||||||||
Sbjct: 804847 tcatcccgatcgtccagcagg 804827
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>gb|BT015172.1| Arabidopsis thaliana At3g10300 gene, complete cds
          Length = 1008

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 167 actgctgcggcgctcctccgt 187
           |||||||||||||||||||||
Sbjct: 400 actgctgcggcgctcctccgt 380



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 167 actgctgcggcgctcctccgt 187
           |||||||||||||||||||||
Sbjct: 361 actgctgcggcgctcctccgt 341
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>gb|AC009400.4|ATAC009400 Arabidopsis thaliana chromosome III BAC F14P13 genomic sequence,
             complete sequence
          Length = 87937

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 167   actgctgcggcgctcctccgt 187
             |||||||||||||||||||||
Sbjct: 43970 actgctgcggcgctcctccgt 43990



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 167   actgctgcggcgctcctccgt 187
             |||||||||||||||||||||
Sbjct: 43931 actgctgcggcgctcctccgt 43951
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>gb|AE012538.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 446
            of 460 of the complete genome
          Length = 10676

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 35   gccgaaaatgtcgcctccggc 55
            |||||||||||||||||||||
Sbjct: 2920 gccgaaaatgtcgcctccggc 2900
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>gb|AY062498.1| Arabidopsis thaliana Unknown protein (At3g10300; F14P13.10) mRNA,
           complete cds
          Length = 1196

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 167 actgctgcggcgctcctccgt 187
           |||||||||||||||||||||
Sbjct: 458 actgctgcggcgctcctccgt 438



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 167 actgctgcggcgctcctccgt 187
           |||||||||||||||||||||
Sbjct: 419 actgctgcggcgctcctccgt 399
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 35      gccgaaaatgtcgcctccggc 55
               |||||||||||||||||||||
Sbjct: 4995652 gccgaaaatgtcgcctccggc 4995632
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>ref|NM_198020.1| Mus musculus TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)
           (Trmt1), mRNA
          Length = 2149

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 317 ccgcgggtgggcgctcttcg 336
           ||||||||||||||||||||
Sbjct: 276 ccgcgggtgggcgctcttcg 257
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>ref|XM_755142.1| Ustilago maydis 521 hypothetical protein (UM04088.1) partial mRNA
          Length = 1131

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 336 gtggactgcgacttcctctt 355
           ||||||||||||||||||||
Sbjct: 604 gtggactgcgacttcctctt 623
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>gb|AC106820.4| Homo sapiens chromosome 16 clone RP11-715J22, complete sequence
          Length = 176552

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   ctccttcacccgcttcctga 297
             ||||||||||||||||||||
Sbjct: 75818 ctccttcacccgcttcctga 75799
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>emb|X58868.1|HEPVGH Pseudorabies virus glycoprotein H gene
          Length = 3422

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 176 gcgctcctccgtgccgctggaggtcatc 203
           |||||||| | |||||||||||||||||
Sbjct: 793 gcgctccttcctgccgctggaggtcatc 820
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>emb|BX927157.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5,
            complete genome; segment 10/10
          Length = 140057

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 51   ccggcaccatgccagctcct 70
            ||||||||||||||||||||
Sbjct: 8877 ccggcaccatgccagctcct 8858
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 227     cgaggccgggctgtactggc 246
               ||||||||||||||||||||
Sbjct: 5082471 cgaggccgggctgtactggc 5082452
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>gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequence
          Length = 250948

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 195    gaggtcatcccgatcgtcca 214
              ||||||||||||||||||||
Sbjct: 245603 gaggtcatcccgatcgtcca 245622
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>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 216     caggagctccgcgaggccgg 235
               ||||||||||||||||||||
Sbjct: 1928312 caggagctccgcgaggccgg 1928293
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>dbj|AK155251.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630211P03
           product:similar to N2,N2-dimethylguanosine tRNA
           methyltransferase [Homo sapiens], full insert sequence
          Length = 2131

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 317 ccgcgggtgggcgctcttcg 336
           ||||||||||||||||||||
Sbjct: 272 ccgcgggtgggcgctcttcg 253
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>dbj|AK171002.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630217D09
           product:similar to N2,N2-dimethylguanosine tRNA
           methyltransferase [Homo sapiens], full insert sequence
          Length = 2130

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 317 ccgcgggtgggcgctcttcg 336
           ||||||||||||||||||||
Sbjct: 272 ccgcgggtgggcgctcttcg 253
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>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 176   gcgctcctccgtgccgctggaggtcatc 203
             |||||||| | |||||||||||||||||
Sbjct: 61137 gcgctccttcctgccgctggaggtcatc 61164
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 215      gcaggagctccgcgaggccg 234
                ||||||||||||||||||||
Sbjct: 13993881 gcaggagctccgcgaggccg 13993900
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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 51      ccggcaccatgccagctcct 70
               ||||||||||||||||||||
Sbjct: 3178222 ccggcaccatgccagctcct 3178203
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>dbj|AP005688.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0031J07
          Length = 172511

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    gcaggagctccgcgaggccg 234
              ||||||||||||||||||||
Sbjct: 111101 gcaggagctccgcgaggccg 111120
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>emb|X61696.1|PRVGHG Pseudorabies virus gH gene for glycoprotein H
          Length = 2484

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 176 gcgctcctccgtgccgctggaggtcatc 203
           |||||||| | |||||||||||||||||
Sbjct: 721 gcgctccttcctgccgctggaggtcatc 748
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>gb|BC027404.1| Mus musculus TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae),
           mRNA (cDNA clone MGC:37065 IMAGE:4950980), complete cds
          Length = 2149

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 317 ccgcgggtgggcgctcttcg 336
           ||||||||||||||||||||
Sbjct: 276 ccgcgggtgggcgctcttcg 257
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>gb|M61196.1|SH1GPGH Pseudorabies virus glycoprotein gH (gH) gene, complete cds
          Length = 3249

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 176 gcgctcctccgtgccgctggaggtcatc 203
           |||||||| | |||||||||||||||||
Sbjct: 648 gcgctccttcctgccgctggaggtcatc 675


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,683,985
Number of Sequences: 3902068
Number of extensions: 1683985
Number of successful extensions: 32247
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31900
Number of HSP's gapped (non-prelim): 338
length of query: 371
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 349
effective length of database: 17,147,199,772
effective search space: 5984372720428
effective search space used: 5984372720428
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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