ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast60h01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470547.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1788 Score = 327 bits (165), Expect = 1e-86 Identities = 210/225 (93%) Strand = Plus / Plus Query: 57 gctgtcgacggagatcgtgaaccgcggcgtggagccgtcggtcccggacgccgggtcgcc 116 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 180 gctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgcc 239 Query: 117 gaccttctcggtgcgcgtgcgccgccggctgccggacttcctgcagtcggtgaacctcaa 176 ||| ||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||| Sbjct: 240 gacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaa 299 Query: 177 gtacgtgcggctcgggtaccactacctgctgagccacggcgtgtacctggccaccatccc 236 ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 300 gtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatccc 359 Query: 237 ggtgatcgtgctggtgtgcggcgccgaggtgggcagcctcagccg 281 ||| |||||||| || |||||||||||||| |||||||||||||| Sbjct: 360 ggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccg 404
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 327 bits (165), Expect = 1e-86 Identities = 210/225 (93%) Strand = Plus / Plus Query: 57 gctgtcgacggagatcgtgaaccgcggcgtggagccgtcggtcccggacgccgggtcgcc 116 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 4248724 gctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgcc 4248783 Query: 117 gaccttctcggtgcgcgtgcgccgccggctgccggacttcctgcagtcggtgaacctcaa 176 ||| ||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||| Sbjct: 4248784 gacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaa 4248843 Query: 177 gtacgtgcggctcgggtaccactacctgctgagccacggcgtgtacctggccaccatccc 236 ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 4248844 gtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatccc 4248903 Query: 237 ggtgatcgtgctggtgtgcggcgccgaggtgggcagcctcagccg 281 ||| |||||||| || |||||||||||||| |||||||||||||| Sbjct: 4248904 ggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccg 4248948 Score = 40.1 bits (20), Expect = 3.7 Identities = 38/44 (86%) Strand = Plus / Minus Query: 139 cgccggctgccggacttcctgcagtcggtgaacctcaagtacgt 182 ||||| || ||||||||| || ||| ||||||||||||||||| Sbjct: 7658203 cgccgcctcccggacttcgcgcggtccgtgaacctcaagtacgt 7658160
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 327 bits (165), Expect = 1e-86 Identities = 210/225 (93%) Strand = Plus / Plus Query: 57 gctgtcgacggagatcgtgaaccgcggcgtggagccgtcggtcccggacgccgggtcgcc 116 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 4248839 gctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgcc 4248898 Query: 117 gaccttctcggtgcgcgtgcgccgccggctgccggacttcctgcagtcggtgaacctcaa 176 ||| ||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||| Sbjct: 4248899 gacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaa 4248958 Query: 177 gtacgtgcggctcgggtaccactacctgctgagccacggcgtgtacctggccaccatccc 236 ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 4248959 gtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatccc 4249018 Query: 237 ggtgatcgtgctggtgtgcggcgccgaggtgggcagcctcagccg 281 ||| |||||||| || |||||||||||||| |||||||||||||| Sbjct: 4249019 ggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccg 4249063 Score = 40.1 bits (20), Expect = 3.7 Identities = 38/44 (86%) Strand = Plus / Minus Query: 139 cgccggctgccggacttcctgcagtcggtgaacctcaagtacgt 182 ||||| || ||||||||| || ||| ||||||||||||||||| Sbjct: 7656038 cgccgcctcccggacttcgcgcggtccgtgaacctcaagtacgt 7655995
>dbj|AK119228.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-A08, full insert sequence Length = 1912 Score = 327 bits (165), Expect = 1e-86 Identities = 210/225 (93%) Strand = Plus / Plus Query: 57 gctgtcgacggagatcgtgaaccgcggcgtggagccgtcggtcccggacgccgggtcgcc 116 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 75 gctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgcc 134 Query: 117 gaccttctcggtgcgcgtgcgccgccggctgccggacttcctgcagtcggtgaacctcaa 176 ||| ||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||| Sbjct: 135 gacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaa 194 Query: 177 gtacgtgcggctcgggtaccactacctgctgagccacggcgtgtacctggccaccatccc 236 ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 195 gtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatccc 254 Query: 237 ggtgatcgtgctggtgtgcggcgccgaggtgggcagcctcagccg 281 ||| |||||||| || |||||||||||||| |||||||||||||| Sbjct: 255 ggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccg 299
>dbj|AK099232.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094M20, full insert sequence Length = 1903 Score = 327 bits (165), Expect = 1e-86 Identities = 210/225 (93%) Strand = Plus / Plus Query: 57 gctgtcgacggagatcgtgaaccgcggcgtggagccgtcggtcccggacgccgggtcgcc 116 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 66 gctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgcc 125 Query: 117 gaccttctcggtgcgcgtgcgccgccggctgccggacttcctgcagtcggtgaacctcaa 176 ||| ||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||| Sbjct: 126 gacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaa 185 Query: 177 gtacgtgcggctcgggtaccactacctgctgagccacggcgtgtacctggccaccatccc 236 ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 186 gtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatccc 245 Query: 237 ggtgatcgtgctggtgtgcggcgccgaggtgggcagcctcagccg 281 ||| |||||||| || |||||||||||||| |||||||||||||| Sbjct: 246 ggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccg 290
>dbj|AK061335.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-B10, full insert sequence Length = 1909 Score = 327 bits (165), Expect = 1e-86 Identities = 210/225 (93%) Strand = Plus / Plus Query: 57 gctgtcgacggagatcgtgaaccgcggcgtggagccgtcggtcccggacgccgggtcgcc 116 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 75 gctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgcc 134 Query: 117 gaccttctcggtgcgcgtgcgccgccggctgccggacttcctgcagtcggtgaacctcaa 176 ||| ||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||| Sbjct: 135 gacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaa 194 Query: 177 gtacgtgcggctcgggtaccactacctgctgagccacggcgtgtacctggccaccatccc 236 ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 195 gtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatccc 254 Query: 237 ggtgatcgtgctggtgtgcggcgccgaggtgggcagcctcagccg 281 ||| |||||||| || |||||||||||||| |||||||||||||| Sbjct: 255 ggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccg 299
>dbj|AK060840.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D04, full insert sequence Length = 1907 Score = 327 bits (165), Expect = 1e-86 Identities = 210/225 (93%) Strand = Plus / Plus Query: 57 gctgtcgacggagatcgtgaaccgcggcgtggagccgtcggtcccggacgccgggtcgcc 116 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 70 gctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgcc 129 Query: 117 gaccttctcggtgcgcgtgcgccgccggctgccggacttcctgcagtcggtgaacctcaa 176 ||| ||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||| Sbjct: 130 gacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaa 189 Query: 177 gtacgtgcggctcgggtaccactacctgctgagccacggcgtgtacctggccaccatccc 236 ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 190 gtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatccc 249 Query: 237 ggtgatcgtgctggtgtgcggcgccgaggtgggcagcctcagccg 281 ||| |||||||| || |||||||||||||| |||||||||||||| Sbjct: 250 ggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccg 294
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 327 bits (165), Expect = 1e-86 Identities = 210/225 (93%) Strand = Plus / Plus Query: 57 gctgtcgacggagatcgtgaaccgcggcgtggagccgtcggtcccggacgccgggtcgcc 116 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 77339 gctgttgacggagatcgtgaaccgcggcgtggagccgtcggggccggacgccgggtcgcc 77398 Query: 117 gaccttctcggtgcgcgtgcgccgccggctgccggacttcctgcagtcggtgaacctcaa 176 ||| ||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||| Sbjct: 77399 gacgttctcggtgcgggtgcggcggcggctgccggacttcctccagtcggtgaacctcaa 77458 Query: 177 gtacgtgcggctcgggtaccactacctgctgagccacggcgtgtacctggccaccatccc 236 ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 77459 gtacgtgcggctcgggtaccactacctcatcagccacggcgtgtacctggccaccatccc 77518 Query: 237 ggtgatcgtgctggtgtgcggcgccgaggtgggcagcctcagccg 281 ||| |||||||| || |||||||||||||| |||||||||||||| Sbjct: 77519 ggtcatcgtgctcgtctgcggcgccgaggtcggcagcctcagccg 77563
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 75.8 bits (38), Expect = 7e-11 Identities = 56/62 (90%) Strand = Plus / Plus Query: 142 cggctgccggacttcctgcagtcggtgaacctcaagtacgtgcggctcgggtaccactac 201 |||||||||||||||| ||||||||||| |||||||||||| ||| |||||||||||| Sbjct: 23225580 cggctgccggacttccagcagtcggtgaggctcaagtacgtgaagctggggtaccactac 23225639 Query: 202 ct 203 || Sbjct: 23225640 ct 23225641 Score = 42.1 bits (21), Expect = 0.94 Identities = 24/25 (96%) Strand = Plus / Plus Query: 13 cgccaggccgccacccagctgcgcc 37 ||||||||||||||| ||||||||| Sbjct: 12861431 cgccaggccgccaccgagctgcgcc 12861455
>dbj|AP003623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0642B07 Length = 139297 Score = 75.8 bits (38), Expect = 7e-11 Identities = 56/62 (90%) Strand = Plus / Plus Query: 142 cggctgccggacttcctgcagtcggtgaacctcaagtacgtgcggctcgggtaccactac 201 |||||||||||||||| ||||||||||| |||||||||||| ||| |||||||||||| Sbjct: 60342 cggctgccggacttccagcagtcggtgaggctcaagtacgtgaagctggggtaccactac 60401 Query: 202 ct 203 || Sbjct: 60402 ct 60403
>dbj|AK101377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036C04, full insert sequence Length = 2134 Score = 75.8 bits (38), Expect = 7e-11 Identities = 56/62 (90%) Strand = Plus / Plus Query: 142 cggctgccggacttcctgcagtcggtgaacctcaagtacgtgcggctcgggtaccactac 201 |||||||||||||||| ||||||||||| |||||||||||| ||| |||||||||||| Sbjct: 270 cggctgccggacttccagcagtcggtgaggctcaagtacgtgaagctggggtaccactac 329 Query: 202 ct 203 || Sbjct: 330 ct 331
>ref|XM_475915.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1563 Score = 73.8 bits (37), Expect = 3e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 140 gccggctgccggacttcctgcagtcggtgaacctcaagtacgtgcggctcgggtaccact 199 ||||||||||||||||| ||| |||||||| |||||||||||| ||| |||||||||| Sbjct: 68 gccggctgccggacttcaagcaatcggtgaagctcaagtacgtgaagctggggtaccact 127 Query: 200 acctgctgagccacggcgtgtacct 224 |||| | | |||||||| |||||| Sbjct: 128 acctcatcacccacggcgcgtacct 152
>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08, complete sequence Length = 119500 Score = 73.8 bits (37), Expect = 3e-10 Identities = 73/85 (85%) Strand = Plus / Minus Query: 140 gccggctgccggacttcctgcagtcggtgaacctcaagtacgtgcggctcgggtaccact 199 ||||||||||||||||| ||| |||||||| |||||||||||| ||| |||||||||| Sbjct: 41528 gccggctgccggacttcaagcaatcggtgaagctcaagtacgtgaagctggggtaccact 41469 Query: 200 acctgctgagccacggcgtgtacct 224 |||| | | |||||||| |||||| Sbjct: 41468 acctcatcacccacggcgcgtacct 41444
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 73.8 bits (37), Expect = 3e-10 Identities = 73/85 (85%) Strand = Plus / Minus Query: 140 gccggctgccggacttcctgcagtcggtgaacctcaagtacgtgcggctcgggtaccact 199 ||||||||||||||||| ||| |||||||| |||||||||||| ||| |||||||||| Sbjct: 28406604 gccggctgccggacttcaagcaatcggtgaagctcaagtacgtgaagctggggtaccact 28406545 Query: 200 acctgctgagccacggcgtgtacct 224 |||| | | |||||||| |||||| Sbjct: 28406544 acctcatcacccacggcgcgtacct 28406520 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 142 cggctgccggacttcctgcagtcggtgaacctcaagtacgtgcggctcgggtaccactac 201 ||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||||| Sbjct: 28060593 cggctgccggacttcctccagagcgtgaacctcaagtacgtgaagctggggtaccactac 28060534 Query: 202 ct 203 || Sbjct: 28060533 ct 28060532
>dbj|AK070754.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067B12, full insert sequence Length = 2233 Score = 73.8 bits (37), Expect = 3e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 140 gccggctgccggacttcctgcagtcggtgaacctcaagtacgtgcggctcgggtaccact 199 ||||||||||||||||| ||| |||||||| |||||||||||| ||| |||||||||| Sbjct: 527 gccggctgccggacttcaagcaatcggtgaagctcaagtacgtgaagctggggtaccact 586 Query: 200 acctgctgagccacggcgtgtacct 224 |||| | | |||||||| |||||| Sbjct: 587 acctcatcacccacggcgcgtacct 611
>ref|XM_464563.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1929 Score = 69.9 bits (35), Expect = 4e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 142 cggctgccggacttcctgcagtcggtgaacctcaagtacgtgcggctcgggtaccactac 201 |||||||||||||||| |||||||||| |||||||||||| ||| |||||||||||| Sbjct: 169 cggctgccggacttccagcagtcggtgcggctcaagtacgtgaagctggggtaccactac 228 Query: 202 ctgctgagccacggcgtgtacct 224 || | | | ||||||||||||| Sbjct: 229 ctcatcaccaacggcgtgtacct 251
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 69.9 bits (35), Expect = 4e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 142 cggctgccggacttcctgcagtcggtgaacctcaagtacgtgcggctcgggtaccactac 201 |||||||||||||||| |||||||||| |||||||||||| ||| |||||||||||| Sbjct: 5932297 cggctgccggacttccagcagtcggtgcggctcaagtacgtgaagctggggtaccactac 5932238 Query: 202 ctgctgagccacggcgtgtacct 224 || | | | ||||||||||||| Sbjct: 5932237 ctcatcaccaacggcgtgtacct 5932215
>dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056C19 Length = 147739 Score = 69.9 bits (35), Expect = 4e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 142 cggctgccggacttcctgcagtcggtgaacctcaagtacgtgcggctcgggtaccactac 201 |||||||||||||||| |||||||||| |||||||||||| ||| |||||||||||| Sbjct: 110518 cggctgccggacttccagcagtcggtgcggctcaagtacgtgaagctggggtaccactac 110459 Query: 202 ctgctgagccacggcgtgtacct 224 || | | | ||||||||||||| Sbjct: 110458 ctcatcaccaacggcgtgtacct 110436
>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544H11 Length = 178376 Score = 69.9 bits (35), Expect = 4e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 142 cggctgccggacttcctgcagtcggtgaacctcaagtacgtgcggctcgggtaccactac 201 |||||||||||||||| |||||||||| |||||||||||| ||| |||||||||||| Sbjct: 162099 cggctgccggacttccagcagtcggtgcggctcaagtacgtgaagctggggtaccactac 162040 Query: 202 ctgctgagccacggcgtgtacct 224 || | | | ||||||||||||| Sbjct: 162039 ctcatcaccaacggcgtgtacct 162017
>dbj|AK067907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127I02, full insert sequence Length = 1929 Score = 69.9 bits (35), Expect = 4e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 142 cggctgccggacttcctgcagtcggtgaacctcaagtacgtgcggctcgggtaccactac 201 |||||||||||||||| |||||||||| |||||||||||| ||| |||||||||||| Sbjct: 169 cggctgccggacttccagcagtcggtgcggctcaagtacgtgaagctggggtaccactac 228 Query: 202 ctgctgagccacggcgtgtacct 224 || | | | ||||||||||||| Sbjct: 229 ctcatcaccaacggcgtgtacct 251
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11, complete sequence Length = 204649 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 142 cggctgccggacttcctgcagtcggtgaacctcaagtacgtgcggctcgggtaccactac 201 ||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||||| Sbjct: 140758 cggctgccggacttcctccagagcgtgaacctcaagtacgtgaagctggggtaccactac 140699 Query: 202 ct 203 || Sbjct: 140698 ct 140697
>dbj|AK119596.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D11, full insert sequence Length = 2378 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 142 cggctgccggacttcctgcagtcggtgaacctcaagtacgtgcggctcgggtaccactac 201 ||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||||| Sbjct: 317 cggctgccggacttcctccagagcgtgaacctcaagtacgtgaagctggggtaccactac 376 Query: 202 ct 203 || Sbjct: 377 ct 378
>dbj|AK101103.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025C07, full insert sequence Length = 2356 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 142 cggctgccggacttcctgcagtcggtgaacctcaagtacgtgcggctcgggtaccactac 201 ||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||||| Sbjct: 318 cggctgccggacttcctccagagcgtgaacctcaagtacgtgaagctggggtaccactac 377 Query: 202 ct 203 || Sbjct: 378 ct 379
>gb|AY308830.1| Marchantia polymorpha FAE3 gene, complete cds Length = 10158 Score = 61.9 bits (31), Expect = 1e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 142 cggctgccggacttcctgcagtcggtgaacctcaagtacgtgcggctcgggtaccactac 201 ||||| ||||| || ||||||||||||||| | ||||||||| ||| |||||||||||| Sbjct: 4174 cggctcccggattttctgcagtcggtgaacatgaagtacgtgaagctggggtaccactac 4233 Query: 202 ctg 204 ||| Sbjct: 4234 ctg 4236
>ref|XM_396811.2| PREDICTED: Apis mellifera similar to Six2 protein (LOC413366), mRNA Length = 1488 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 20 ccgccacccagctgcgcccagc 41 |||||||||||||||||||||| Sbjct: 1144 ccgccacccagctgcgcccagc 1165
>ref|NM_194947.1| Oryza sativa (japonica cultivar-group) putative senescence-associated protein 15 (OSJNBa0036D19.6), mRNA Length = 1797 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 cgccgccggctgccggacttc 156 ||||||||||||||||||||| Sbjct: 88 cgccgccggctgccggacttc 108
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 cgcccgccaggccgccaccca 29 ||||||||||||||||||||| Sbjct: 3708358 cgcccgccaggccgccaccca 3708378
>gb|AC087723.3| Oryza sativa chromosome 10 clone OSJNBa0036D19, complete sequence Length = 144359 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 cgccgccggctgccggacttc 156 ||||||||||||||||||||| Sbjct: 73233 cgccgccggctgccggacttc 73213
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 cgccgccggctgccggacttc 156 ||||||||||||||||||||| Sbjct: 3640392 cgccgccggctgccggacttc 3640372
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 0.94 Identities = 24/25 (96%) Strand = Plus / Plus Query: 239 tgatcgtgctggtgtgcggcgccga 263 |||||||||| |||||||||||||| Sbjct: 43025 tgatcgtgctcgtgtgcggcgccga 43049
>dbj|AP004325.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1230_H04 Length = 123818 Score = 42.1 bits (21), Expect = 0.94 Identities = 24/25 (96%) Strand = Plus / Plus Query: 13 cgccaggccgccacccagctgcgcc 37 ||||||||||||||| ||||||||| Sbjct: 33918 cgccaggccgccaccgagctgcgcc 33942
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 cgcccgccaggccgccaccca 29 ||||||||||||||||||||| Sbjct: 3699954 cgcccgccaggccgccaccca 3699974
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 0.94 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 cgccgccggctgccggacttc 156 ||||||||||||||||||||| Sbjct: 3640313 cgccgccggctgccggacttc 3640293
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 128 tgcgcgtgcgccgccggctgccgg 151 |||||||| ||||||||||||||| Sbjct: 1317453 tgcgcgtgtgccgccggctgccgg 1317430
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 caccatcccggtgatcgtgc 247 |||||||||||||||||||| Sbjct: 3008949 caccatcccggtgatcgtgc 3008968
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 tgcgcgtgcgccgccggctgccgg 151 |||||||| ||||||||||||||| Sbjct: 2144137 tgcgcgtgtgccgccggctgccgg 2144160
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 128 tgcgcgtgcgccgccggctgccgg 151 |||||||| ||||||||||||||| Sbjct: 2230552 tgcgcgtgtgccgccggctgccgg 2230529
>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0096L14, from chromosome 3, complete sequence Length = 131142 Score = 40.1 bits (20), Expect = 3.7 Identities = 38/44 (86%) Strand = Plus / Plus Query: 139 cgccggctgccggacttcctgcagtcggtgaacctcaagtacgt 182 ||||| || ||||||||| || ||| ||||||||||||||||| Sbjct: 57087 cgccgcctcccggacttcgcgcggtccgtgaacctcaagtacgt 57130
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 cggcgccgaggtgggcagcc 274 |||||||||||||||||||| Sbjct: 4410761 cggcgccgaggtgggcagcc 4410742 Score = 40.1 bits (20), Expect = 3.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 113 cgccgaccttctcggtgcgcgtgcgccgccgg 144 ||||||||||| ||| ||||| |||||||||| Sbjct: 3873533 cgccgaccttcgcggcgcgcgcgcgccgccgg 3873564
>dbj|AK119222.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E03, full insert sequence Length = 2098 Score = 40.1 bits (20), Expect = 3.7 Identities = 38/44 (86%) Strand = Plus / Plus Query: 139 cgccggctgccggacttcctgcagtcggtgaacctcaagtacgt 182 ||||| || ||||||||| || ||| ||||||||||||||||| Sbjct: 237 cgccgcctcccggacttcgcgcggtccgtgaacctcaagtacgt 280
>dbj|AK112059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A11, full insert sequence Length = 2025 Score = 40.1 bits (20), Expect = 3.7 Identities = 38/44 (86%) Strand = Plus / Plus Query: 139 cgccggctgccggacttcctgcagtcggtgaacctcaagtacgt 182 ||||| || ||||||||| || ||| ||||||||||||||||| Sbjct: 237 cgccgcctcccggacttcgcgcggtccgtgaacctcaagtacgt 280
>ref|XM_309208.2| Anopheles gambiae str. PEST ENSANGP00000005397 (ENSANGG00000004156), partial mRNA Length = 7809 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tgcgcgtgcgccgccggctg 147 |||||||||||||||||||| Sbjct: 3190 tgcgcgtgcgccgccggctg 3209
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 ccggacgccgggtcgccgac 119 |||||||||||||||||||| Sbjct: 3172587 ccggacgccgggtcgccgac 3172606 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,779,611 Number of Sequences: 3902068 Number of extensions: 1779611 Number of successful extensions: 71602 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70455 Number of HSP's gapped (non-prelim): 1147 length of query: 284 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 262 effective length of database: 17,147,199,772 effective search space: 4492566340264 effective search space used: 4492566340264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
