ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast60g12 |
|---|---|
| Clone Library Name | barley_pub |
>NETB_DROME (Q24568) Netrin-B precursor| Length = 793 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 7/37 (18%) Frame = +1 Query: 190 LASVTTPTRRSAVAPGRXLTPPSTA-------AVTLP 279 LA+ T P + V P +TPPSTA AVTLP Sbjct: 353 LAATTPPQQPPKVTPPGKVTPPSTAAPSAAASAVTLP 389
>TIF1G_HUMAN (Q9UPN9) Transcription intermediary factor 1-gamma (TIF1-gamma)| (RET-fused gene 7 protein) (Rfg7 protein) (Tripartite motif protein 33) Length = 1127 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 4/42 (9%) Frame = +1 Query: 142 GVARTCPGTAWSIGTGLA----SVTTPTRRSAVAPGRXLTPP 255 G A+ A S+GTG+A S P SA APG PP Sbjct: 73 GSAQAASSPAASVGTGVAGGAVSTPAPAPASAPAPGPSAGPP 114
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +1 Query: 160 PGTAWSIGTGLASVTTPTRRSAVAPGRXLTPPSTAAVT 273 PGTA + +++ TTPT + G +TP S T Sbjct: 4550 PGTALTPPVWISTTTTPTTTTPTTSGSTVTPSSIPGTT 4587
>TATB_PSEAE (Q9HUB4) Sec-independent protein translocase protein tatB homolog| Length = 141 Score = 28.1 bits (61), Expect = 5.7 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Frame = +1 Query: 118 RLLCPV-GRGVARTCPGTAWSIGTGLASVTTPTRRSAVAPGRXLTPPSTAAVTLPAP 285 +LL P+ G+ + P A PT AV P PP+ AA T P+P Sbjct: 77 KLLAPLTGQNPPQETPPPAAESPAPSVPTPPPTSTPAVPPADAAAPPAVAASTPPSP 133
>EXPA9_ARATH (Q9LZ99) Alpha-expansin 9 precursor (AtEXPA9) (At-EXP9) (AtEx9)| (Ath-ExpAlpha-1.10) Length = 258 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/27 (44%), Positives = 12/27 (44%) Frame = +3 Query: 252 TFYXXXXXXXXXXXXXXYGNLYSTGYG 332 TFY YGNLYS GYG Sbjct: 38 TFYGEADASGTMGGACGYGNLYSQGYG 64
>EXP15_ARATH (O80622) Alpha-expansin 15 precursor (AtEXPA15) (At-EXP15) (AtEx15)| (Ath-ExpAlpha-1.3) Length = 248 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/27 (44%), Positives = 12/27 (44%) Frame = +3 Query: 252 TFYXXXXXXXXXXXXXXYGNLYSTGYG 332 TFY YGNLYS GYG Sbjct: 31 TFYGGSDASGTMGGACGYGNLYSQGYG 57
>EXPA6_ARATH (Q38865) Alpha-expansin 6 precursor (AtEXPA6) (At-EXP6) (AtEx6)| (Ath-ExpAlpha-1.8) Length = 257 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/27 (44%), Positives = 12/27 (44%) Frame = +3 Query: 252 TFYXXXXXXXXXXXXXXYGNLYSTGYG 332 TFY YGNLYS GYG Sbjct: 37 TFYGGSDASGTMGGACGYGNLYSQGYG 63
>EXPA4_ARATH (O48818) Alpha-expansin 4 precursor (AtEXPA4) (At-EXP4) (AtEx4)| (Ath-ExpAlpha-1.6) Length = 257 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/27 (44%), Positives = 12/27 (44%) Frame = +3 Query: 252 TFYXXXXXXXXXXXXXXYGNLYSTGYG 332 TFY YGNLYS GYG Sbjct: 37 TFYGGSDASGTMGGACGYGNLYSQGYG 63
>EXPA3_ARATH (O80932) Alpha-expansin 3 precursor (AtEXPA3) (At-EXP3) (AtEx3)| (Ath-ExpAlpha-1.9) Length = 262 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/27 (44%), Positives = 12/27 (44%) Frame = +3 Query: 252 TFYXXXXXXXXXXXXXXYGNLYSTGYG 332 TFY YGNLYS GYG Sbjct: 42 TFYGGSDASGTMGGACGYGNLYSQGYG 68
>EXP14_ARATH (Q9FMA0) Putative alpha-expansin 14 precursor (AtEXPA14) (At-EXP14)| (AtEx14) (Ath-ExpAlpha-1.5) Length = 255 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/27 (44%), Positives = 12/27 (44%) Frame = +3 Query: 252 TFYXXXXXXXXXXXXXXYGNLYSTGYG 332 TFY YGNLYS GYG Sbjct: 35 TFYGGADASGTMGGACGYGNLYSQGYG 61
>EXPA1_ARATH (Q9C554) Alpha-expansin 1 precursor (AtEXPA1) (At-EXP1) (AtEx1)| (Ath-ExpAlpha-1.2) Length = 250 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/27 (44%), Positives = 12/27 (44%) Frame = +3 Query: 252 TFYXXXXXXXXXXXXXXYGNLYSTGYG 332 TFY YGNLYS GYG Sbjct: 33 TFYGGGDASGTMGGACGYGNLYSQGYG 59
>Y1350_PROMM (P59919) UPF0284 protein PMT1350| Length = 403 Score = 27.3 bits (59), Expect = 9.7 Identities = 20/53 (37%), Positives = 24/53 (45%) Frame = -3 Query: 281 AGSVTAAVEGGVSXRPGATAERRVGVVTDARPVPMDQAVPGQVRATPLPTGQS 123 AG+ TA VEG +S +A RR V DA + P PLP G S Sbjct: 57 AGTRTAEVEG-ISAAGATSAARRFTAVADAELLLKGPDRPRLCSLPPLPAGIS 108
>RS6E_AERPE (Q9Y9B6) 30S ribosomal protein S6e| Length = 245 Score = 27.3 bits (59), Expect = 9.7 Identities = 17/43 (39%), Positives = 21/43 (48%) Frame = -3 Query: 257 EGGVSXRPGATAERRVGVVTDARPVPMDQAVPGQVRATPLPTG 129 +GG+ PG + R G TDA +PM VPG R L G Sbjct: 157 DGGLIGMPGLKFKIRGG--TDATGIPMHPGVPGSGRYKVLLAG 197
>EXP16_ARATH (Q9M2S9) Alpha-expansin 16 precursor (AtEXPA16) (At-EXP16) (AtEx16)| (Ath-ExpAlpha-1.7) Length = 260 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/27 (44%), Positives = 12/27 (44%) Frame = +3 Query: 252 TFYXXXXXXXXXXXXXXYGNLYSTGYG 332 TFY YGNLYS GYG Sbjct: 40 TFYGGNDASGTMGGACGYGNLYSQGYG 66
>RPOC2_NEPOL (Q9TL04) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1463 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +1 Query: 115 SRLLCPVGRGVARTCPGTAWSIGTG 189 S LLC RG+ R C G W++GTG Sbjct: 308 SVLLCKSKRGLCRLCYG--WNLGTG 330
>EXPA5_ARATH (Q38864) Alpha-expansin 5 precursor (AtEXPA5) (At-EXP5) (AtEx5)| (Ath-ExpAlpha-1.4) Length = 255 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/27 (44%), Positives = 12/27 (44%) Frame = +3 Query: 252 TFYXXXXXXXXXXXXXXYGNLYSTGYG 332 TFY YGNLYS GYG Sbjct: 44 TFYGGGDASGTMGGACGYGNLYSQGYG 70
>EXP10_ARATH (Q9LDR9) Alpha-expansin 10 precursor (AtEXPA10) (At-EXP10) (AtEx10)| (Ath-ExpAlpha-1.1) Length = 249 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/27 (44%), Positives = 12/27 (44%) Frame = +3 Query: 252 TFYXXXXXXXXXXXXXXYGNLYSTGYG 332 TFY YGNLYS GYG Sbjct: 32 TFYGGGDASGTMGGACGYGNLYSQGYG 58 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,021,390 Number of Sequences: 219361 Number of extensions: 366342 Number of successful extensions: 2085 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2002 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2085 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
