>YCBX_ECOLI (P75863) Hypothetical protein ycbX|
          Length = 369

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 207 ILIYPVKSCKGVSVTQAPVTATGFRWDRQWLVVNAKGRALTQRVEPKM 350
           + I+PVKS +G+ +T A    +G  +DR +++    G  +T R  P+M
Sbjct: 7   LFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGTFITARQFPQM 54

>PHBC_RALEU (P23608) Poly-beta-hydroxybutyrate polymerase (EC 2.3.1.-)|
           (Poly(3-hydroxybutyrate) polymerase) (PHB polymerase)
           (PHB synthase) (Poly(3-hydroxyalkanoate) polymerase)
           (PHA polymerase) (PHA synthase) (Polyhydroxyalkanoic
           acid synthase)
          Length = 589

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
 Frame = +3

Query: 246 VTQAPVT-ATGFRWDRQWLVVNAKGRALTQRVEPKMALVEVELPPAAFDD 392
           VT  P   AT   W RQW      G A    +    AL  V++ PA   D
Sbjct: 21  VTPGPFDPATWLEWSRQWQGTEGNGHAAASGIPGLDALAGVKIAPAQLGD 70

>G156_PARPR (P13837) G surface protein, allelic form 156 precursor|
          Length = 2715

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
 Frame = -2

Query: 409  GAGCQSSSKA----AGGNSTSTSAILGSTRCVSALPLAFTTNHCRSHLNPVAV---TGAC 251
            GAG  SS+      AG  +  T+A +  T C +A  + F   +C S+LN   V     AC
Sbjct: 1657 GAGNYSSANCNEMKAGCTNNGTTACVAKT-CANAAGITFNHTNCNSYLNTCTVNSGNSAC 1715

Query: 250  VT 245
             T
Sbjct: 1716 QT 1717

>NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)|
            (214 kDa nucleoporin) (DNup214)
          Length = 1711

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = -2

Query: 409  GAGCQSSSKAAGGNSTSTSAILGSTRCVSALPLAFTTNHCRSHLNPVAVTGACVTET 239
            G G  + S + GG   ++  + GST+ V+  P + T     +  +P++ T + ++ T
Sbjct: 1219 GGGLSAGSFSFGGTIDASKGLFGSTKPVATAPTSVT--EANNKTDPISTTPSAISTT 1273

>SGS4_DROME (Q00725) Salivary glue protein Sgs-4 precursor|
          Length = 297

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 412 SGAGCQSSSKAAGGNSTSTSAILGSTRCVSALPLAFTTNHCRSHLNPVAVT 260
           SG GC S +++ GG S      L + +C  + P    +  C+S   P A +
Sbjct: 215 SGCGCGSKNESGGGGSGCILKDLLTPKCPDSKPKPQASPKCKSDPKPKAAS 265

>SYI_BACSU (Q45477) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 921

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 17/56 (30%), Positives = 32/56 (57%)
 Frame = +3

Query: 234 KGVSVTQAPVTATGFRWDRQWLVVNAKGRALTQRVEPKMALVEVELPPAAFDDDWQ 401
           KGV  ++AP    GF    + +  +   +A+TQ+++ K ALV++E    ++  DW+
Sbjct: 351 KGVMTSEAP----GF----EGMFYDDANKAITQQLDEKGALVKLEFITHSYPHDWR 398

>ATG13_YARLI (Q6C315) Autophagy-related protein 13|
          Length = 715

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 19/92 (20%), Positives = 28/92 (30%)
 Frame = -2

Query: 286 SHLNPVAVTGACVTETPLQDLTGYMRMDATXXXXXXXXXXXXXXXXXXXRKDAAFSISRS 107
           SH   V V+GA +  T +  +T YM    +                       +  +S  
Sbjct: 307 SHSQGVGVSGAAIVPTSVSSVTDYMERRRSSGASGVGATGGGLAGTSGGSGGVSGGVSGG 366

Query: 106 RRGGSECGAESGDRRSDSDKRLISPPPYPPAA 11
             G    G   G+  S       + P  PP A
Sbjct: 367 SGGSGGSGGWGGEEGSPGPAATSASPSTPPFA 398

>APX1_CAEEL (P41990) Anterior pharynx in excess protein 1 precursor|
          Length = 515

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 17/56 (30%), Positives = 20/56 (35%)
 Frame = -2

Query: 403 GCQSSSKAAGGNSTSTSAILGSTRCVSALPLAFTTNHCRSHLNPVAVTGACVTETP 236
           GC +  +    N  S +     TRC   LP A   N            G CV ETP
Sbjct: 180 GCSNRGRCVAPNQCSCADGFNGTRCEQCLPRAGCVN------------GDCVNETP 223


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,293,978
Number of Sequences: 219361
Number of extensions: 570343
Number of successful extensions: 2898
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2890
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)