ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast60g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VP75_SHV21 (P11282) Probable membrane antigen 75 (Tegument protein) 33 0.17
2MURD_SALCH (Q57TD2) UDP-N-acetylmuramoylalanine--D-glutamate lig... 30 1.4
3MURD_SALTY (Q8ZRU4) UDP-N-acetylmuramoylalanine--D-glutamate lig... 30 1.4
4GPAT2_ARATH (Q9FZ22) Probable glycerol-3-phosphate acyltransfera... 29 3.1
5MURD_SALPA (Q5PDC2) UDP-N-acetylmuramoylalanine--D-glutamate lig... 28 5.3
6RECF_PASMU (Q9CLQ6) DNA replication and repair protein recF 28 5.3
7MURD_SALTI (Q8Z9H0) UDP-N-acetylmuramoylalanine--D-glutamate lig... 28 5.3
8PSAB_AMPCA (P58383) Photosystem I P700 chlorophyll a apoprotein ... 28 7.0
9MURD_PHOLL (Q7N145) UDP-N-acetylmuramoylalanine--D-glutamate lig... 28 7.0
10ZMYM6_HUMAN (O95789) Zinc finger MYM-type protein 6 (Zinc finger... 27 9.1

>VP75_SHV21 (P11282) Probable membrane antigen 75 (Tegument protein)|
          Length = 1299

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 330  GNQALQIKPIRQLCHRSPQQLFSCPS 253
            GN A+ +K +  LC   P QL++CPS
Sbjct: 1002 GNNAMDLKHLEDLCTHKPLQLYTCPS 1027



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>MURD_SALCH (Q57TD2) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 438

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 178 GSGCSARTPPCTRCLVAVKLLMYCYGRTRKQL 273
           G G SA   P TR L   ++ +YC+GR   QL
Sbjct: 346 GDGKSADFSPLTRYLTGDRIRLYCFGRDGAQL 377



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>MURD_SALTY (Q8ZRU4) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 437

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 178 GSGCSARTPPCTRCLVAVKLLMYCYGRTRKQL 273
           G G SA   P TR L   ++ +YC+GR   QL
Sbjct: 345 GDGKSADFSPLTRYLTGDRIRLYCFGRDGAQL 376



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>GPAT2_ARATH (Q9FZ22) Probable glycerol-3-phosphate acyltransferase 2 (EC|
           2.3.1.15) (AtGPAT2)
          Length = 530

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -1

Query: 303 IRQLCHRSPQQLF-SCPSITVHQ 238
           +R+ CHRSP+Q +  CPS  +HQ
Sbjct: 22  LRRWCHRSPKQKYQKCPSHGLHQ 44



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>MURD_SALPA (Q5PDC2) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 438

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 178 GSGCSARTPPCTRCLVAVKLLMYCYGRTRKQL 273
           G G SA   P  R L   ++ +YC+GR   QL
Sbjct: 346 GDGKSADFSPLARYLTGDRIRLYCFGRDGAQL 377



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>RECF_PASMU (Q9CLQ6) DNA replication and repair protein recF|
          Length = 358

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = -1

Query: 366 HQSSHGITELRDGNQALQI-----KPIRQLCHRSPQQLFSCPSITV 244
           HQ S G+ +LR GN  ++I       I  L H  P QL +   +T+
Sbjct: 79  HQWSVGLQKLRQGNSVVKINGEDGNKIADLAHLLPMQLITPEGLTL 124



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>MURD_SALTI (Q8Z9H0) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 437

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 178 GSGCSARTPPCTRCLVAVKLLMYCYGRTRKQL 273
           G G SA   P  R L   ++ +YC+GR   QL
Sbjct: 345 GDGKSADFSPLARYLTGDRIRLYCFGRDGAQL 376



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>PSAB_AMPCA (P58383) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)|
           (PSI-B)
          Length = 644

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 305 PYDSCATDHHSSCFLVLP*QYISSFTATKHLVHGGV 198
           PYD  AT       L +  QYI +F AT   VHGG+
Sbjct: 296 PYDYLATTS-----LYVHHQYIGAFLATGGFVHGGI 326



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>MURD_PHOLL (Q7N145) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 436

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 178 GSGCSARTPPCTRCLVAVKLLMYCYGRTRKQL 273
           G G SA   P    L   K+ +YC+GR  KQL
Sbjct: 344 GDGKSADFSPLKPFLCGNKVQLYCFGRDGKQL 375



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>ZMYM6_HUMAN (O95789) Zinc finger MYM-type protein 6 (Zinc finger protein 258)|
          Length = 723

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 253 HNSTSAVLPPPSTLCTEVSSPSSLNPRDL 167
           H+S + + PPP   CT  S    LNP+D+
Sbjct: 124 HSSPACLPPPPKKTCTNCSK-DILNPKDV 151


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,736,298
Number of Sequences: 219361
Number of extensions: 634315
Number of successful extensions: 1740
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1740
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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