ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast60g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ244055.1| Hordeum vulgare reticulon mRNA, complete cds 369 4e-99
2dbj|AK073583.1| Oryza sativa (japonica cultivar-group) cDNA clon... 236 4e-59
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 153 5e-34
4dbj|AP003527.3| Oryza sativa (japonica cultivar-group) genomic D... 153 5e-34
5gb|AY104742.1| Zea mays PCO152525 mRNA sequence 135 1e-28
6dbj|AK104196.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
7dbj|AK072628.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
8dbj|AK059921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
10dbj|AP004683.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
11gb|AY105560.1| Zea mays PCO120447 mRNA sequence 58 2e-05
12gb|AC122419.4| Mus musculus BAC clone RP24-163H24 from chromosom... 42 1.3
13gb|AC124476.5| Mus musculus BAC clone RP24-93F9 from chromosome ... 42 1.3
14dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.3
15gb|AC004877.1| Homo sapiens PAC clone RP4-751H13 from 7, complet... 40 5.2
16emb|AL645950.13| Mouse DNA sequence from clone RP23-13C17 on chr... 40 5.2
17ref|NM_064862.3| Caenorhabditis elegans Ribosomal Protein, Small... 40 5.2
18gb|AC087415.1|AC087415 Caenorhabditis briggsae cosmid CB005O21, ... 40 5.2
19gb|AC084604.1|CBRG43O03 Caenorhabditis briggsae cosmid G43O03, c... 40 5.2
20gb|U80953.1| Caenorhabditis elegans cosmid B0412, complete sequence 40 5.2 
>gb|DQ244055.1| Hordeum vulgare reticulon mRNA, complete cds
          Length = 615

 Score =  369 bits (186), Expect = 4e-99
 Identities = 192/194 (98%)
 Strand = Plus / Plus

                                                                       
Query: 194 cgaggacacctccgtgcacaaggtgcttggtggcggtaaaactgctgatgtactgttatg 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15  cgaggacacctccgtgcacaaggtgcttggtggcggtaaaactgctgatgtactgttatg 74

                                                                       
Query: 254 gaaggacaagaaaacaactgctgtggtgatcggtggcacaactgtcgtatgggttttatt 313
           |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 75  gaagaacaagaaaacaactgctgtggtgatcggtggcacaactgtcatatgggttttatt 134

                                                                       
Query: 314 tgaagtgcttgattaccatctcttaactctgttatcccatgtgatgattggtgtcctggc 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tgaagtgcttgattaccatctcttaactctgttatcccatgtgatgattggtgtcctggc 194

                         
Query: 374 catcttgttcgtgt 387
           ||||||||||||||
Sbjct: 195 catcttgttcgtgt 208



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 atggccgatccagccgagga 31
          ||||||||||||||||||||
Sbjct: 1  atggccgatccagccgagga 20
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>dbj|AK073583.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051P18, full
           insert sequence
          Length = 1147

 Score =  236 bits (119), Expect = 4e-59
 Identities = 185/207 (89%)
 Strand = Plus / Plus

                                                                       
Query: 177 gggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggcggtaaaact 236
           ||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||||
Sbjct: 238 gggttcaggctgctcggggaggacacctccgtgcacaaggctcttgggggcggtaaaact 297

                                                                       
Query: 237 gctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggtggcacaact 296
           ||||||||||| |||||||| |||||||| ||| | ||||| ||||| |||||  |||||
Sbjct: 298 gctgatgtactattatggaaagacaagaagacatccgctgtagtgattggtggtgcaact 357

                                                                       
Query: 297 gtcgtatgggttttatttgaagtgcttgattaccatctcttaactctgttatcccatgtg 356
           ||| ||||| | || |||||||||||||||||||||||||| |||||| | |||||||||
Sbjct: 358 gtcatatggatcttgtttgaagtgcttgattaccatctcttgactctgctttcccatgtg 417

                                      
Query: 357 atgattggtgtcctggccatcttgttc 383
           |||||||||| | ||||||||||||||
Sbjct: 418 atgattggtgccttggccatcttgttc 444
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  153 bits (77), Expect = 5e-34
 Identities = 131/149 (87%)
 Strand = Plus / Plus

                                                                            
Query: 235      ctgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggtggcacaa 294
                ||||||||||||| |||||||| |||||||| ||| | ||||| ||||| |||||  |||
Sbjct: 17621503 ctgctgatgtactattatggaaagacaagaagacatccgctgtagtgattggtggtgcaa 17621562

                                                                            
Query: 295      ctgtcgtatgggttttatttgaagtgcttgattaccatctcttaactctgttatcccatg 354
                ||||| ||||| | || |||||||||||||||||||||||||| |||||| | |||||||
Sbjct: 17621563 ctgtcatatggatcttgtttgaagtgcttgattaccatctcttgactctgctttcccatg 17621622

                                             
Query: 355      tgatgattggtgtcctggccatcttgttc 383
                |||||||||||| | ||||||||||||||
Sbjct: 17621623 tgatgattggtgccttggccatcttgttc 17621651



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                          
Query: 177      gggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggcggtaaaa 234
                ||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||
Sbjct: 17619068 gggttcaggctgctcggggaggacacctccgtgcacaaggctcttgggggcggtaaaa 17619125
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>dbj|AP003527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0564B04
          Length = 64684

 Score =  153 bits (77), Expect = 5e-34
 Identities = 131/149 (87%)
 Strand = Plus / Plus

                                                                         
Query: 235   ctgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggtggcacaa 294
             ||||||||||||| |||||||| |||||||| ||| | ||||| ||||| |||||  |||
Sbjct: 47851 ctgctgatgtactattatggaaagacaagaagacatccgctgtagtgattggtggtgcaa 47910

                                                                         
Query: 295   ctgtcgtatgggttttatttgaagtgcttgattaccatctcttaactctgttatcccatg 354
             ||||| ||||| | || |||||||||||||||||||||||||| |||||| | |||||||
Sbjct: 47911 ctgtcatatggatcttgtttgaagtgcttgattaccatctcttgactctgctttcccatg 47970

                                          
Query: 355   tgatgattggtgtcctggccatcttgttc 383
             |||||||||||| | ||||||||||||||
Sbjct: 47971 tgatgattggtgccttggccatcttgttc 47999



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                       
Query: 177   gggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggcggtaaaa 234
             ||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||
Sbjct: 45416 gggttcaggctgctcggggaggacacctccgtgcacaaggctcttgggggcggtaaaa 45473
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>gb|AY104742.1| Zea mays PCO152525 mRNA sequence
          Length = 1163

 Score =  135 bits (68), Expect = 1e-28
 Identities = 167/200 (83%)
 Strand = Plus / Plus

                                                                       
Query: 168 aggtcccgtgggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggc 227
           |||||||| || |||||||| || || |||||||| |||||||||||    ||||| |||
Sbjct: 236 aggtcccggggattcaggcttcttggagaggacacttccgtgcacaaatcccttgggggc 295

                                                                       
Query: 228 ggtaaaactgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggt 287
           |||||||||||||| || ||||||||||| |||||||||||  ||||||| || || || 
Sbjct: 296 ggtaaaactgctgacgttctgttatggaaagacaagaaaacttctgctgttgtaataggc 355

                                                                       
Query: 288 ggcacaactgtcgtatgggttttatttgaagtgcttgattaccatctcttaactctgtta 347
           ||| |||||||| | |||||| | || ||||||||||||||||| ||| | || ||| ||
Sbjct: 356 ggcgcaactgtcatctgggttctgttcgaagtgcttgattaccacctcctgaccctgata 415

                               
Query: 348 tcccatgtgatgattggtgt 367
           ||||||||  ||||||||||
Sbjct: 416 tcccatgtactgattggtgt 435
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>dbj|AK104196.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H05, full
           insert sequence
          Length = 993

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 128/156 (82%)
 Strand = Plus / Plus

                                                                       
Query: 228 ggtaaaactgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggt 287
           |||||| ||||||||||||| || ||||| |||||||| |   ||||||  ||||| |||
Sbjct: 183 ggtaaagctgctgatgtacttttgtggaaagacaagaagatctctgctgcagtgataggt 242

                                                                       
Query: 288 ggcacaactgtcgtatgggttttatttgaagtgcttgattaccatctcttaactctgtta 347
           ||| |||||||  | |||||| | ||||||||  ||||||||||| || | |||||| ||
Sbjct: 243 ggcgcaactgtgttgtgggttctctttgaagttgttgattaccatttcctcactctgata 302

                                               
Query: 348 tcccatgtgatgattggtgtcctggccatcttgttc 383
           || |||||  |||| ||||| |||||||||||||||
Sbjct: 303 tctcatgtcctgatcggtgtactggccatcttgttc 338
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>dbj|AK072628.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023130B01, full
           insert sequence
          Length = 880

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 128/156 (82%)
 Strand = Plus / Plus

                                                                       
Query: 228 ggtaaaactgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggt 287
           |||||| ||||||||||||| || ||||| |||||||| |   ||||||  ||||| |||
Sbjct: 65  ggtaaagctgctgatgtacttttgtggaaagacaagaagatctctgctgcagtgataggt 124

                                                                       
Query: 288 ggcacaactgtcgtatgggttttatttgaagtgcttgattaccatctcttaactctgtta 347
           ||| |||||||  | |||||| | ||||||||  ||||||||||| || | |||||| ||
Sbjct: 125 ggcgcaactgtgttgtgggttctctttgaagttgttgattaccatttcctcactctgata 184

                                               
Query: 348 tcccatgtgatgattggtgtcctggccatcttgttc 383
           || |||||  |||| ||||| |||||||||||||||
Sbjct: 185 tctcatgtcctgatcggtgtactggccatcttgttc 220
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>dbj|AK059921.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G09, full
           insert sequence
          Length = 1028

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 128/156 (82%)
 Strand = Plus / Plus

                                                                       
Query: 228 ggtaaaactgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggt 287
           |||||| ||||||||||||| || ||||| |||||||| |   ||||||  ||||| |||
Sbjct: 232 ggtaaagctgctgatgtacttttgtggaaagacaagaagatctctgctgcagtgataggt 291

                                                                       
Query: 288 ggcacaactgtcgtatgggttttatttgaagtgcttgattaccatctcttaactctgtta 347
           ||| |||||||  | |||||| | ||||||||  ||||||||||| || | |||||| ||
Sbjct: 292 ggcgcaactgtgttgtgggttctctttgaagttgttgattaccatttcctcactctgata 351

                                               
Query: 348 tcccatgtgatgattggtgtcctggccatcttgttc 383
           || |||||  |||| ||||| |||||||||||||||
Sbjct: 352 tctcatgtcctgatcggtgtactggccatcttgttc 387
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 122/149 (81%)
 Strand = Plus / Plus

                                                                           
Query: 235     ctgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggtggcacaa 294
               ||||||||||||| || ||||| |||||||| |   ||||||  ||||| |||||| |||
Sbjct: 9498262 ctgctgatgtacttttgtggaaagacaagaagatctctgctgcagtgataggtggcgcaa 9498321

                                                                           
Query: 295     ctgtcgtatgggttttatttgaagtgcttgattaccatctcttaactctgttatcccatg 354
               ||||  | |||||| | ||||||||  ||||||||||| || | |||||| |||| ||||
Sbjct: 9498322 ctgtgttgtgggttctctttgaagttgttgattaccatttcctcactctgatatctcatg 9498381

                                            
Query: 355     tgatgattggtgtcctggccatcttgttc 383
               |  |||| ||||| |||||||||||||||
Sbjct: 9498382 tcctgatcggtgtactggccatcttgttc 9498410
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>dbj|AP004683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0006C08
          Length = 151987

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 122/149 (81%)
 Strand = Plus / Plus

                                                                          
Query: 235    ctgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggtggcacaa 294
              ||||||||||||| || ||||| |||||||| |   ||||||  ||||| |||||| |||
Sbjct: 111823 ctgctgatgtacttttgtggaaagacaagaagatctctgctgcagtgataggtggcgcaa 111882

                                                                          
Query: 295    ctgtcgtatgggttttatttgaagtgcttgattaccatctcttaactctgttatcccatg 354
              ||||  | |||||| | ||||||||  ||||||||||| || | |||||| |||| ||||
Sbjct: 111883 ctgtgttgtgggttctctttgaagttgttgattaccatttcctcactctgatatctcatg 111942

                                           
Query: 355    tgatgattggtgtcctggccatcttgttc 383
              |  |||| ||||| |||||||||||||||
Sbjct: 111943 tcctgatcggtgtactggccatcttgttc 111971
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>gb|AY105560.1| Zea mays PCO120447 mRNA sequence
          Length = 1191

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 68/81 (83%)
 Strand = Plus / Plus

                                                                       
Query: 228 ggtaaaactgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggt 287
           |||||||||||||||||||| || ||||| |||||||| ||  |||||| |||  | |||
Sbjct: 258 ggtaaaactgctgatgtacttttgtggaaagacaagaagacctctgctgcggtagttggt 317

                                
Query: 288 ggcacaactgtcgtatgggtt 308
           ||  |||||||| ||||||||
Sbjct: 318 ggtgcaactgtcctatgggtt 338
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>gb|AC122419.4| Mus musculus BAC clone RP24-163H24 from chromosome 10, complete
             sequence
          Length = 131907

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 284   cggtggcacaactgtcgtatg 304
             |||||||||||||||||||||
Sbjct: 44066 cggtggcacaactgtcgtatg 44086
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>gb|AC124476.5| Mus musculus BAC clone RP24-93F9 from chromosome 10, complete sequence
          Length = 169031

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 284    cggtggcacaactgtcgtatg 304
              |||||||||||||||||||||
Sbjct: 164520 cggtggcacaactgtcgtatg 164540
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 140     gcccgcgtctgcgccggacaccacggtcaggtc 172
               ||||||||| ||| ||||||| |||||||||||
Sbjct: 2094902 gcccgcgtccgcgtcggacacgacggtcaggtc 2094934
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>gb|AC004877.1| Homo sapiens PAC clone RP4-751H13 from 7, complete sequence
          Length = 128361

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   aggcggccccgcccgcgtct 149
             ||||||||||||||||||||
Sbjct: 28377 aggcggccccgcccgcgtct 28358
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>emb|AL645950.13| Mouse DNA sequence from clone RP23-13C17 on chromosome 1 Contains the
             Eef1b2 gene for eukaryotic translation elongation factor 1
             beta 2, the Ndufs1 gene for NADH dehydrogenase
             (ubiquinone) Fe-S protein 1 (Ndufs1), the Gpr1 gene for
             G-protein coupled receptor 1, the 5' end of a novel gene,
             two novel genes and two CpG islands, complete sequence
          Length = 138564

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 364   gtgtcctggccatcttgttc 383
             ||||||||||||||||||||
Sbjct: 19185 gtgtcctggccatcttgttc 19166
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>ref|NM_064862.3| Caenorhabditis elegans Ribosomal Protein, Small subunit family
           member (rps-29) (rps-29) mRNA, complete cds
          Length = 321

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 142 ccgcgtctgcgccggacaccacgg 165
           |||||||||||| |||||||||||
Sbjct: 77  ccgcgtctgcgctggacaccacgg 100
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>gb|AC087415.1|AC087415 Caenorhabditis briggsae cosmid CB005O21, complete sequence
          Length = 68731

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 142   ccgcgtctgcgccggacaccacgg 165
             |||||||||||| |||||||||||
Sbjct: 63580 ccgcgtctgcgctggacaccacgg 63603
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>gb|AC084604.1|CBRG43O03 Caenorhabditis briggsae cosmid G43O03, complete sequence
          Length = 39067

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   ggtgatcggtggcacaactg 297
             ||||||||||||||||||||
Sbjct: 23718 ggtgatcggtggcacaactg 23699
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>gb|U80953.1| Caenorhabditis elegans cosmid B0412, complete sequence
          Length = 33975

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 142  ccgcgtctgcgccggacaccacgg 165
            |||||||||||| |||||||||||
Sbjct: 5647 ccgcgtctgcgctggacaccacgg 5670


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,200,630
Number of Sequences: 3902068
Number of extensions: 2200630
Number of successful extensions: 39165
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39036
Number of HSP's gapped (non-prelim): 128
length of query: 387
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 365
effective length of database: 17,147,199,772
effective search space: 6258727916780
effective search space used: 6258727916780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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