ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast60g07 |
|---|---|
| Clone Library Name | barley_pub |
>SYQ_XYLFT (Q87DU6) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 580 Score = 26.9 bits (58), Expect(2) = 0.093 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -2 Query: 116 LPKMAHLEHPIPWHGSPKQPSHPTYLKF 33 LP +HL P+ G P++PS P ++F Sbjct: 256 LPNNSHLLKPLLDKGFPQEPSQPRQIEF 283 Score = 26.6 bits (57), Expect(2) = 0.093 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -3 Query: 259 VTHSLADFDFHDHRP 215 +THSL +F DHRP Sbjct: 231 ITHSLCTLEFEDHRP 245
>SYQ_XYLFA (Q9PDP1) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 580 Score = 26.9 bits (58), Expect(2) = 0.093 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -2 Query: 116 LPKMAHLEHPIPWHGSPKQPSHPTYLKF 33 LP +HL P+ G P++PS P ++F Sbjct: 256 LPNNSHLLKPLLDKGFPQEPSQPRQIEF 283 Score = 26.6 bits (57), Expect(2) = 0.093 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -3 Query: 259 VTHSLADFDFHDHRP 215 +THSL +F DHRP Sbjct: 231 ITHSLCTLEFEDHRP 245
>PGMI_AERPE (Q9YE01) Bifunctional phosphoglucose/phosphomannose isomerase| (Glucose-6-phosphate isomerase) (EC 5.3.1.9) (GPI) (Phosphoglucose isomerase) (PGI) (Mannose-6-phosphate isomerase) (EC 5.3.1.8) (Phosphomannose isomerase) (PMI) Length = 335 Score = 31.6 bits (70), Expect = 0.80 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 11/46 (23%) Frame = -3 Query: 406 APPGLAXRVLQ--RPPRPPTHR--GMALAQMAG-------CGSRAS 302 AP G RV++ RPPRPP HR G+ LA +G CGS S Sbjct: 57 APQGPEFRVVKDFRPPRPPRHRGYGLVLASYSGNTLETVECGSLLS 102
>HPS4_HUMAN (Q9NQG7) Hermansky-Pudlak syndrome 4 protein (Light-ear protein| homolog) Length = 708 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%) Frame = +2 Query: 320 PGHLGE----RHAPMSRRARRPLQNPXREPGRSGRR 415 PGH + R P+ RR RRPL P +PG+ G + Sbjct: 447 PGHSSQAPIPRADPLPRRTRRPLLLPRLDPGQRGNK 482
>PLMN_BOVIN (P06868) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin| heavy chain A; Activation peptide; Plasmin heavy chain A, short form; Plasmin light chain B] Length = 812 Score = 30.0 bits (66), Expect = 2.3 Identities = 18/55 (32%), Positives = 22/55 (40%) Frame = +3 Query: 141 PEAGLRCPTAR*PRTHKGCWSIKTAGRWSWKSKSAKECVTTHLPNQLAPKMDGAE 305 P AGL R P K W T R W+ + K+C T AP+ G E Sbjct: 424 PNAGLTMNYCRNPDADKSPWCYTTDPRVRWEFCNLKKCSETPEQVPAAPQAPGVE 478
>APC_HUMAN (P25054) Adenomatous polyposis coli protein (Protein APC)| Length = 2843 Score = 28.9 bits (63), Expect = 5.2 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +2 Query: 320 PGHLGERHAPMSRRARRPLQNPXREPGRS 406 P G R + SR A++PL P + PGR+ Sbjct: 2299 PSRSGSRDSTPSRPAQQPLSRPIQSPGRN 2327
>ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 20) (ADAM-TS 20) (ADAM-TS20) Length = 1906 Score = 28.9 bits (63), Expect = 5.2 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = +3 Query: 159 CPTAR*PRTHKGCWSIKTAGRWSWKSKSAKECVTT 263 C PRTHK C S + SWK+ KEC T Sbjct: 1452 CSHLHKPRTHKACRSGRCP---SWKANKWKECSVT 1483
>NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88| kDa nuclear pore complex protein) (Nucleoporin Nup84) Length = 742 Score = 28.9 bits (63), Expect = 5.2 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +2 Query: 224 VMEVEIR*GVCNNSPAESTSPENGWR*SARPTPGHLGERH 343 V+ + +R G+ N SPAE+ P S P P HL R+ Sbjct: 22 VVFLRLREGLKNQSPAEADKPATSTSPSCPPLPPHLPTRN 61
>LITAF_XENTR (Q6P828) Lipopolysaccharide-induced tumor necrosis factor-alpha| factor homolog (LPS-induced TNF-alpha factor homolog) Length = 148 Score = 28.5 bits (62), Expect = 6.7 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = -3 Query: 409 AAPPGLAXRVLQRPPRPPTHRGMALAQMA 323 +APP PP PP H+GM M+ Sbjct: 18 SAPPSYEEATFHHPPYPPLHQGMDAKNMS 46
>SAYP_DROME (Q9VWF2) Supporter of activation of yellow protein (Protein enhancer| of yellow 3) Length = 2006 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = +3 Query: 132 RDEPEAGLRCPTAR*PRTHKGCWSI--KTAGR---WSWKSKSAKECV 257 RD PEA +RC T R R H C + + GR ++W+ K C+ Sbjct: 1707 RDMPEAFIRCYTCR-KRVHPSCVDMPPRMVGRVRNYNWQCAGCKCCI 1752
>RS13_THEVO (Q97B96) 30S ribosomal protein S13P| Length = 171 Score = 28.5 bits (62), Expect = 6.7 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +1 Query: 133 GMNRKPGYGAQLRANLEPTKGVGRLRQQD 219 G+ + GY R NL+PTK +G L++ + Sbjct: 54 GIGLRLGYAIAERLNLQPTKKIGELKEDE 82
>YTHD1_HUMAN (Q9BYJ9) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1) (DACA-1) Length = 559 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%) Frame = -3 Query: 409 AAPPGLAXRVLQRPPRP-------PTHRGMALAQMAGCGSRASAP 296 A PP LA Q P +P P +R A Q G GS +++P Sbjct: 307 AQPPALAQPQYQSPQQPPQTRWVAPRNRNAAFGQSGGAGSDSNSP 351
>OPA1_MOUSE (P58281) Dynamin-like 120 kDa protein, mitochondrial precursor| (Large GTP-binding protein) (LargeG) Length = 960 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +3 Query: 219 RWS-WKSKSAKECVTTHLPNQLAPKMDGAEARDPHPAIWAS 338 RW WK+++ ++CV N+L + + D HPA AS Sbjct: 774 RWMYWKNRTQEQCVHNETKNELEKML---KVNDEHPAYLAS 811
>CYSH_NEIMA (Q9JUD5) Phosphoadenosine phosphosulfate reductase (EC 1.8.4.8)| (PAPS reductase, thioredoxin dependent) (PAdoPS reductase) (3'-phosphoadenylylsulfate reductase) (PAPS sulfotransferase) Length = 244 Score = 28.1 bits (61), Expect = 8.8 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 213 AGRWSWKSKSAKEC 254 AGRW W+ K++KEC Sbjct: 227 AGRWWWEDKNSKEC 240
>SYQ_CHRVO (Q7NX86) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 560 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 7/30 (23%) Frame = -3 Query: 259 VTHSLADFDFHDHRPA-------VLIDQHP 191 +THSL +F DHRP + I+ HP Sbjct: 227 ITHSLCSLEFEDHRPLYDWVLDNISIEHHP 256
>CCNL1_CHICK (Q5ZJP9) Cyclin-L1| Length = 534 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = +2 Query: 53 GSAASVSRATESGAPSGPFLVSRTGDAG*TGSRVTVP 163 GSAA+V+ A G P+GP T A TGS VP Sbjct: 6 GSAAAVA-AVAGGGPAGPHAAGVTAGAVTTGSGAPVP 41 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,666,771 Number of Sequences: 219361 Number of extensions: 1510939 Number of successful extensions: 4445 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4187 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4443 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
