ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast60f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U19384.1|HVU19384 Hordeum vulgare cysteine proteinase EPB2 ge... 72 5e-10
2gb|U19359.1|HVU19359 Hordeum vulgare cysteine proteinase EPB1 ge... 72 5e-10
3gb|AC149162.3| Xenopus tropicalis clone ISB-362P17, complete seq... 46 0.030
4gb|AC149150.3| Xenopus tropicalis clone ISB-186B10, complete seq... 46 0.030
5gb|AC149165.3| Xenopus tropicalis clone ISB-5C15, complete sequence 46 0.030
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.47
7dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.47
8gb|DQ443356.1| Bombyx mori tropomyosin isoform 5 mRNA, complete cds 40 1.9
9gb|DQ443312.1| Bombyx mori tropomyosin 1 mRNA, complete cds 40 1.9
10emb|AL445686.14| Human DNA sequence from clone RP11-496D1 on chr... 40 1.9
11ref|XM_391961.2| PREDICTED: Apis mellifera similar to tropomyosi... 40 1.9
12ref|XM_623506.1| PREDICTED: Apis mellifera similar to putative t... 40 1.9
13ref|XM_623467.1| PREDICTED: Apis mellifera similar to CG4898-PB,... 40 1.9
14ref|XM_623390.1| PREDICTED: Apis mellifera similar to CG4898-PL,... 40 1.9
15ref|XM_623344.1| PREDICTED: Apis mellifera similar to putative t... 40 1.9
16ref|XM_392125.2| PREDICTED: Apis mellifera similar to putative t... 40 1.9
17ref|XM_623043.1| PREDICTED: Apis mellifera similar to putative t... 40 1.9
18gb|AF106961.1| Periplaneta americana tropomyosin mRNA, complete cds 40 1.9
19gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome... 38 7.4
20gb|AC147174.2| Xenopus tropicalis clone CH216-51H8, complete seq... 38 7.4
21gb|AC148454.2| Xenopus tropicalis clone CH216-161F9, complete se... 38 7.4
22gb|AC147206.2| Xenopus tropicalis clone CH216-39C21, complete se... 38 7.4
23gb|AC147170.3| Xenopus tropicalis clone CH216-154J22, complete s... 38 7.4
24gb|AC150241.3| Rhinolophus ferrumequinum clone VMRC7-311G24, com... 38 7.4
25dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.4
26dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.4
27emb|BX511156.5| Zebrafish DNA sequence from clone DKEY-1M1 in li... 38 7.4
28gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold 38 7.4
29gb|AC012592.10| Homo sapiens BAC clone RP11-381F16 from 2, compl... 38 7.4
30gb|AC122343.4| Mus musculus BAC clone RP23-359L18 from chromosom... 38 7.4
31gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 7.4
32emb|AL954364.5|CNS08CCZ Oryza sativa chromosome 12, . BAC OSJNBa... 38 7.4
33gb|AC166834.2| Mus musculus BAC clone RP23-158D24 from chromosom... 38 7.4
34emb|AL732473.12| Mouse DNA sequence from clone RP23-130J8 on chr... 38 7.4

>gb|U19384.1|HVU19384 Hordeum vulgare cysteine proteinase EPB2 gene, complete cds
          Length = 2714

 Score = 71.9 bits (36), Expect = 5e-10
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                           
Query: 106 cacgatggggctgcttagcaagaagcttctgatcgcgtccatggtggc 153
           ||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct: 841 cacgatggggctgcttagcaagaagcttctggtggcatccatggtggc 888



 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 9   atctcacactccaagcaagctagcccccaagcag 42
           ||||||||||||||||||||||||| ||||||||
Sbjct: 731 atctcacactccaagcaagctagccaccaagcag 764



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>gb|U19359.1|HVU19359 Hordeum vulgare cysteine proteinase EPB1 gene, complete cds
          Length = 2880

 Score = 71.9 bits (36), Expect = 5e-10
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                            
Query: 106  cacgatggggctgcttagcaagaagcttctgatcgcgtccatggtggc 153
            ||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct: 1036 cacgatggggctgcttagcaagaagcttctggtggcatccatggtggc 1083



 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 9   atctcacactccaagcaagctagcccccaagcag 42
           ||||||||||||||||||||||||| ||||||||
Sbjct: 926 atctcacactccaagcaagctagccaccaagcag 959



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>gb|AC149162.3| Xenopus tropicalis clone ISB-362P17, complete sequence
          Length = 90513

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 61    gtacagcactgcatacaaaggta 83
             |||||||||||||||||||||||
Sbjct: 79662 gtacagcactgcatacaaaggta 79684



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>gb|AC149150.3| Xenopus tropicalis clone ISB-186B10, complete sequence
          Length = 53356

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 61    gtacagcactgcatacaaaggta 83
             |||||||||||||||||||||||
Sbjct: 44713 gtacagcactgcatacaaaggta 44691



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>gb|AC149165.3| Xenopus tropicalis clone ISB-5C15, complete sequence
          Length = 51842

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 61    gtacagcactgcatacaaaggta 83
             |||||||||||||||||||||||
Sbjct: 41348 gtacagcactgcatacaaaggta 41326



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 38      agcagctgctagctagctctg 58
               |||||||||||||||||||||
Sbjct: 8302919 agcagctgctagctagctctg 8302939



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>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0434D08
          Length = 161266

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 38    agcagctgctagctagctctg 58
             |||||||||||||||||||||
Sbjct: 96850 agcagctgctagctagctctg 96870



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>gb|DQ443356.1| Bombyx mori tropomyosin isoform 5 mRNA, complete cds
          Length = 934

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 135 tgatcgcgtccatggtggcg 154
           ||||||||||||||||||||
Sbjct: 87  tgatcgcgtccatggtggcg 68



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>gb|DQ443312.1| Bombyx mori tropomyosin 1 mRNA, complete cds
          Length = 1187

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 135 tgatcgcgtccatggtggcg 154
           ||||||||||||||||||||
Sbjct: 87  tgatcgcgtccatggtggcg 68



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>emb|AL445686.14| Human DNA sequence from clone RP11-496D1 on chromosome 1 Contains the
             gene for a novel protein (FLJ42528), a ribosomal protein
             L26 (RPL26) pseudogene, the 5' end of the SRRM1 gene for
             serine/arginine repetitive matrix 1 and a CpG island,
             complete sequence
          Length = 107868

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    gcccccaagcagctgctagc 50
             ||||||||||||||||||||
Sbjct: 10558 gcccccaagcagctgctagc 10539



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>ref|XM_391961.2| PREDICTED: Apis mellifera similar to tropomyosin 1 (LOC408414),
           mRNA
          Length = 1253

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 135 tgatcgcgtccatggtggcg 154
           ||||||||||||||||||||
Sbjct: 121 tgatcgcgtccatggtggcg 102



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>ref|XM_623506.1| PREDICTED: Apis mellifera similar to putative tropomyosin
           (LOC408583), mRNA
          Length = 1122

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 135 tgatcgcgtccatggtggcg 154
           ||||||||||||||||||||
Sbjct: 117 tgatcgcgtccatggtggcg 98



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>ref|XM_623467.1| PREDICTED: Apis mellifera similar to CG4898-PB, isoform B
           (LOC408583), mRNA
          Length = 1982

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 135 tgatcgcgtccatggtggcg 154
           ||||||||||||||||||||
Sbjct: 436 tgatcgcgtccatggtggcg 417



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>ref|XM_623390.1| PREDICTED: Apis mellifera similar to CG4898-PL, isoform L
           (LOC408583), mRNA
          Length = 1278

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 135 tgatcgcgtccatggtggcg 154
           ||||||||||||||||||||
Sbjct: 436 tgatcgcgtccatggtggcg 417



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>ref|XM_623344.1| PREDICTED: Apis mellifera similar to putative tropomyosin
           (LOC408583), mRNA
          Length = 1333

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 135 tgatcgcgtccatggtggcg 154
           ||||||||||||||||||||
Sbjct: 117 tgatcgcgtccatggtggcg 98



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>ref|XM_392125.2| PREDICTED: Apis mellifera similar to putative tropomyosin
           (LOC408583), mRNA
          Length = 1501

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 135 tgatcgcgtccatggtggcg 154
           ||||||||||||||||||||
Sbjct: 117 tgatcgcgtccatggtggcg 98



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>ref|XM_623043.1| PREDICTED: Apis mellifera similar to putative tropomyosin
           (LOC408583), mRNA
          Length = 1232

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 135 tgatcgcgtccatggtggcg 154
           ||||||||||||||||||||
Sbjct: 117 tgatcgcgtccatggtggcg 98



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>gb|AF106961.1| Periplaneta americana tropomyosin mRNA, complete cds
          Length = 1325

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 135 tgatcgcgtccatggtggcg 154
           ||||||||||||||||||||
Sbjct: 82  tgatcgcgtccatggtggcg 63



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>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11,
             complete sequence
          Length = 204649

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                            
Query: 25    aagctagcccccaagcagctgctagctagct 55
             |||||||||| | | ||||||||||||||||
Sbjct: 17943 aagctagccctcgatcagctgctagctagct 17913



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>gb|AC147174.2| Xenopus tropicalis clone CH216-51H8, complete sequence
          Length = 191184

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 55    tctgcggtacagcactgcataca 77
             ||||| |||||||||||||||||
Sbjct: 92728 tctgctgtacagcactgcataca 92706



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>gb|AC148454.2| Xenopus tropicalis clone CH216-161F9, complete sequence
          Length = 186914

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 55    tctgcggtacagcactgcataca 77
             ||||| |||||||||||||||||
Sbjct: 90021 tctgctgtacagcactgcataca 89999



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>gb|AC147206.2| Xenopus tropicalis clone CH216-39C21, complete sequence
          Length = 167795

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 55     tctgcggtacagcactgcataca 77
              ||||| |||||||||||||||||
Sbjct: 130873 tctgctgtacagcactgcataca 130851



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>gb|AC147170.3| Xenopus tropicalis clone CH216-154J22, complete sequence
          Length = 163973

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 55     tctgcggtacagcactgcataca 77
              ||||| |||||||||||||||||
Sbjct: 133647 tctgctgtacagcactgcataca 133625



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>gb|AC150241.3| Rhinolophus ferrumequinum clone VMRC7-311G24, complete sequence
          Length = 174113

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 110    atggggctgcttagcaaga 128
              |||||||||||||||||||
Sbjct: 130009 atggggctgcttagcaaga 129991



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 36      caagcagctgctagctagc 54
               |||||||||||||||||||
Sbjct: 2345443 caagcagctgctagctagc 2345425



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                               
Query: 25       aagctagcccccaagcagctgctagctagct 55
                |||||||||| | | ||||||||||||||||
Sbjct: 27937778 aagctagccctcgatcagctgctagctagct 27937748



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>emb|BX511156.5| Zebrafish DNA sequence from clone DKEY-1M1 in linkage group 2, complete
              sequence
          Length = 158656

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 118    gcttagcaagaagcttctg 136
              |||||||||||||||||||
Sbjct: 105048 gcttagcaagaagcttctg 105030



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>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold
          Length = 1756392

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 110     atggggctgcttagcaaga 128
               |||||||||||||||||||
Sbjct: 1058780 atggggctgcttagcaaga 1058762



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>gb|AC012592.10| Homo sapiens BAC clone RP11-381F16 from 2, complete sequence
          Length = 155682

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 97     agagcacagcacgatgggg 115
              |||||||||||||||||||
Sbjct: 118650 agagcacagcacgatgggg 118632



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>gb|AC122343.4| Mus musculus BAC clone RP23-359L18 from chromosome 7, complete sequence
          Length = 228892

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 33     ccccaagcagctgctagct 51
              |||||||||||||||||||
Sbjct: 214615 ccccaagcagctgctagct 214597



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 36      caagcagctgctagctagc 54
               |||||||||||||||||||
Sbjct: 2345387 caagcagctgctagctagc 2345369



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>emb|AL954364.5|CNS08CCZ Oryza sativa chromosome 12, . BAC OSJNBa0023M16 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 156258

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 36    caagcagctgctagctagc 54
             |||||||||||||||||||
Sbjct: 70634 caagcagctgctagctagc 70616



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>gb|AC166834.2| Mus musculus BAC clone RP23-158D24 from chromosome 7, complete sequence
          Length = 212016

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    ccccaagcagctgctagct 51
             |||||||||||||||||||
Sbjct: 96621 ccccaagcagctgctagct 96639



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>emb|AL732473.12| Mouse DNA sequence from clone RP23-130J8 on chromosome 4, complete
              sequence
          Length = 183937

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 24     caagctagcccccaagcagctgc 46
              |||||| ||||||||||||||||
Sbjct: 134701 caagctggcccccaagcagctgc 134679


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 985,615
Number of Sequences: 3902068
Number of extensions: 985615
Number of successful extensions: 61080
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60870
Number of HSP's gapped (non-prelim): 210
length of query: 154
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 132
effective length of database: 17,147,199,772
effective search space: 2263430369904
effective search space used: 2263430369904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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