| Clone Name | bast60f09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U19384.1|HVU19384 Hordeum vulgare cysteine proteinase EPB2 gene, complete cds Length = 2714 Score = 71.9 bits (36), Expect = 5e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 106 cacgatggggctgcttagcaagaagcttctgatcgcgtccatggtggc 153 ||||||||||||||||||||||||||||||| | || ||||||||||| Sbjct: 841 cacgatggggctgcttagcaagaagcttctggtggcatccatggtggc 888 Score = 60.0 bits (30), Expect = 2e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 9 atctcacactccaagcaagctagcccccaagcag 42 ||||||||||||||||||||||||| |||||||| Sbjct: 731 atctcacactccaagcaagctagccaccaagcag 764
>gb|U19359.1|HVU19359 Hordeum vulgare cysteine proteinase EPB1 gene, complete cds Length = 2880 Score = 71.9 bits (36), Expect = 5e-10 Identities = 45/48 (93%) Strand = Plus / Plus Query: 106 cacgatggggctgcttagcaagaagcttctgatcgcgtccatggtggc 153 ||||||||||||||||||||||||||||||| | || ||||||||||| Sbjct: 1036 cacgatggggctgcttagcaagaagcttctggtggcatccatggtggc 1083 Score = 60.0 bits (30), Expect = 2e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 9 atctcacactccaagcaagctagcccccaagcag 42 ||||||||||||||||||||||||| |||||||| Sbjct: 926 atctcacactccaagcaagctagccaccaagcag 959
>gb|AC149162.3| Xenopus tropicalis clone ISB-362P17, complete sequence Length = 90513 Score = 46.1 bits (23), Expect = 0.030 Identities = 23/23 (100%) Strand = Plus / Plus Query: 61 gtacagcactgcatacaaaggta 83 ||||||||||||||||||||||| Sbjct: 79662 gtacagcactgcatacaaaggta 79684
>gb|AC149150.3| Xenopus tropicalis clone ISB-186B10, complete sequence Length = 53356 Score = 46.1 bits (23), Expect = 0.030 Identities = 23/23 (100%) Strand = Plus / Minus Query: 61 gtacagcactgcatacaaaggta 83 ||||||||||||||||||||||| Sbjct: 44713 gtacagcactgcatacaaaggta 44691
>gb|AC149165.3| Xenopus tropicalis clone ISB-5C15, complete sequence Length = 51842 Score = 46.1 bits (23), Expect = 0.030 Identities = 23/23 (100%) Strand = Plus / Minus Query: 61 gtacagcactgcatacaaaggta 83 ||||||||||||||||||||||| Sbjct: 41348 gtacagcactgcatacaaaggta 41326
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 agcagctgctagctagctctg 58 ||||||||||||||||||||| Sbjct: 8302919 agcagctgctagctagctctg 8302939
>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0434D08 Length = 161266 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 agcagctgctagctagctctg 58 ||||||||||||||||||||| Sbjct: 96850 agcagctgctagctagctctg 96870
>gb|DQ443356.1| Bombyx mori tropomyosin isoform 5 mRNA, complete cds Length = 934 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 tgatcgcgtccatggtggcg 154 |||||||||||||||||||| Sbjct: 87 tgatcgcgtccatggtggcg 68
>gb|DQ443312.1| Bombyx mori tropomyosin 1 mRNA, complete cds Length = 1187 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 tgatcgcgtccatggtggcg 154 |||||||||||||||||||| Sbjct: 87 tgatcgcgtccatggtggcg 68
>emb|AL445686.14| Human DNA sequence from clone RP11-496D1 on chromosome 1 Contains the gene for a novel protein (FLJ42528), a ribosomal protein L26 (RPL26) pseudogene, the 5' end of the SRRM1 gene for serine/arginine repetitive matrix 1 and a CpG island, complete sequence Length = 107868 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 gcccccaagcagctgctagc 50 |||||||||||||||||||| Sbjct: 10558 gcccccaagcagctgctagc 10539
>ref|XM_391961.2| PREDICTED: Apis mellifera similar to tropomyosin 1 (LOC408414), mRNA Length = 1253 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 tgatcgcgtccatggtggcg 154 |||||||||||||||||||| Sbjct: 121 tgatcgcgtccatggtggcg 102
>ref|XM_623506.1| PREDICTED: Apis mellifera similar to putative tropomyosin (LOC408583), mRNA Length = 1122 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 tgatcgcgtccatggtggcg 154 |||||||||||||||||||| Sbjct: 117 tgatcgcgtccatggtggcg 98
>ref|XM_623467.1| PREDICTED: Apis mellifera similar to CG4898-PB, isoform B (LOC408583), mRNA Length = 1982 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 tgatcgcgtccatggtggcg 154 |||||||||||||||||||| Sbjct: 436 tgatcgcgtccatggtggcg 417
>ref|XM_623390.1| PREDICTED: Apis mellifera similar to CG4898-PL, isoform L (LOC408583), mRNA Length = 1278 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 tgatcgcgtccatggtggcg 154 |||||||||||||||||||| Sbjct: 436 tgatcgcgtccatggtggcg 417
>ref|XM_623344.1| PREDICTED: Apis mellifera similar to putative tropomyosin (LOC408583), mRNA Length = 1333 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 tgatcgcgtccatggtggcg 154 |||||||||||||||||||| Sbjct: 117 tgatcgcgtccatggtggcg 98
>ref|XM_392125.2| PREDICTED: Apis mellifera similar to putative tropomyosin (LOC408583), mRNA Length = 1501 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 tgatcgcgtccatggtggcg 154 |||||||||||||||||||| Sbjct: 117 tgatcgcgtccatggtggcg 98
>ref|XM_623043.1| PREDICTED: Apis mellifera similar to putative tropomyosin (LOC408583), mRNA Length = 1232 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 tgatcgcgtccatggtggcg 154 |||||||||||||||||||| Sbjct: 117 tgatcgcgtccatggtggcg 98
>gb|AF106961.1| Periplaneta americana tropomyosin mRNA, complete cds Length = 1325 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 tgatcgcgtccatggtggcg 154 |||||||||||||||||||| Sbjct: 82 tgatcgcgtccatggtggcg 63
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11, complete sequence Length = 204649 Score = 38.2 bits (19), Expect = 7.4 Identities = 28/31 (90%) Strand = Plus / Minus Query: 25 aagctagcccccaagcagctgctagctagct 55 |||||||||| | | |||||||||||||||| Sbjct: 17943 aagctagccctcgatcagctgctagctagct 17913
>gb|AC147174.2| Xenopus tropicalis clone CH216-51H8, complete sequence Length = 191184 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 55 tctgcggtacagcactgcataca 77 ||||| ||||||||||||||||| Sbjct: 92728 tctgctgtacagcactgcataca 92706
>gb|AC148454.2| Xenopus tropicalis clone CH216-161F9, complete sequence Length = 186914 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 55 tctgcggtacagcactgcataca 77 ||||| ||||||||||||||||| Sbjct: 90021 tctgctgtacagcactgcataca 89999
>gb|AC147206.2| Xenopus tropicalis clone CH216-39C21, complete sequence Length = 167795 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 55 tctgcggtacagcactgcataca 77 ||||| ||||||||||||||||| Sbjct: 130873 tctgctgtacagcactgcataca 130851
>gb|AC147170.3| Xenopus tropicalis clone CH216-154J22, complete sequence Length = 163973 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 55 tctgcggtacagcactgcataca 77 ||||| ||||||||||||||||| Sbjct: 133647 tctgctgtacagcactgcataca 133625
>gb|AC150241.3| Rhinolophus ferrumequinum clone VMRC7-311G24, complete sequence Length = 174113 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 110 atggggctgcttagcaaga 128 ||||||||||||||||||| Sbjct: 130009 atggggctgcttagcaaga 129991
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 36 caagcagctgctagctagc 54 ||||||||||||||||||| Sbjct: 2345443 caagcagctgctagctagc 2345425
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 7.4 Identities = 28/31 (90%) Strand = Plus / Minus Query: 25 aagctagcccccaagcagctgctagctagct 55 |||||||||| | | |||||||||||||||| Sbjct: 27937778 aagctagccctcgatcagctgctagctagct 27937748
>emb|BX511156.5| Zebrafish DNA sequence from clone DKEY-1M1 in linkage group 2, complete sequence Length = 158656 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 118 gcttagcaagaagcttctg 136 ||||||||||||||||||| Sbjct: 105048 gcttagcaagaagcttctg 105030
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold Length = 1756392 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 110 atggggctgcttagcaaga 128 ||||||||||||||||||| Sbjct: 1058780 atggggctgcttagcaaga 1058762
>gb|AC012592.10| Homo sapiens BAC clone RP11-381F16 from 2, complete sequence Length = 155682 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 agagcacagcacgatgggg 115 ||||||||||||||||||| Sbjct: 118650 agagcacagcacgatgggg 118632
>gb|AC122343.4| Mus musculus BAC clone RP23-359L18 from chromosome 7, complete sequence Length = 228892 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccccaagcagctgctagct 51 ||||||||||||||||||| Sbjct: 214615 ccccaagcagctgctagct 214597
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 36 caagcagctgctagctagc 54 ||||||||||||||||||| Sbjct: 2345387 caagcagctgctagctagc 2345369
>emb|AL954364.5|CNS08CCZ Oryza sativa chromosome 12, . BAC OSJNBa0023M16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 156258 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 36 caagcagctgctagctagc 54 ||||||||||||||||||| Sbjct: 70634 caagcagctgctagctagc 70616
>gb|AC166834.2| Mus musculus BAC clone RP23-158D24 from chromosome 7, complete sequence Length = 212016 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 ccccaagcagctgctagct 51 ||||||||||||||||||| Sbjct: 96621 ccccaagcagctgctagct 96639
>emb|AL732473.12| Mouse DNA sequence from clone RP23-130J8 on chromosome 4, complete sequence Length = 183937 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 24 caagctagcccccaagcagctgc 46 |||||| |||||||||||||||| Sbjct: 134701 caagctggcccccaagcagctgc 134679 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 985,615 Number of Sequences: 3902068 Number of extensions: 985615 Number of successful extensions: 61080 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60870 Number of HSP's gapped (non-prelim): 210 length of query: 154 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 132 effective length of database: 17,147,199,772 effective search space: 2263430369904 effective search space used: 2263430369904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)